Wall clock time and date at job start Tue Mar 31 2020 15:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00302 * 2 1 4 4 O 1.20826 * 119.99960 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00061 * 180.27476 * 3 2 1 6 6 C 1.50699 * 109.46734 * 179.72885 * 5 3 2 7 7 C 1.38271 * 119.93327 * 269.72216 * 6 5 3 8 8 C 1.38172 * 120.09842 * 179.76929 * 7 6 5 9 9 C 1.38677 * 119.96459 * 0.49225 * 8 7 6 10 10 O 1.35972 * 120.05994 * 179.74085 * 9 8 7 11 11 C 1.34245 * 117.00054 * 260.96882 * 10 9 8 12 12 O 1.20827 * 120.00306 * 5.39156 * 11 10 9 13 13 C 1.50708 * 119.99779 * 185.38507 * 11 10 9 14 14 S 1.81004 * 109.46852 * 180.02562 * 13 11 10 15 15 C 1.76202 * 99.99628 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.38797 * 119.99846 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00145 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99989 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47246 * 89.99918 * 19 17 15 21 21 H 1.48498 * 109.47226 * 210.00288 * 19 17 15 22 22 H 1.48497 * 109.47150 * 330.00211 * 19 17 15 23 23 C 1.38913 * 119.87379 * 359.76625 * 9 8 7 24 24 F 1.35103 * 120.04842 * 179.97438 * 23 9 8 25 25 C 1.38241 * 119.93929 * 90.00839 * 6 5 3 26 26 H 1.09000 * 109.47594 * 59.99098 * 1 2 3 27 27 H 1.09000 * 109.47674 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46912 * 299.99486 * 1 2 3 29 29 H 1.08996 * 109.46735 * 299.72747 * 5 3 2 30 30 H 1.08996 * 109.46540 * 59.73212 * 5 3 2 31 31 H 1.08002 * 119.95638 * 0.02748 * 7 6 5 32 32 H 1.08005 * 120.02158 * 180.23474 * 8 7 6 33 33 H 1.08991 * 109.47082 * 300.00525 * 13 11 10 34 34 H 1.09003 * 109.46719 * 60.00429 * 13 11 10 35 35 H 0.97004 * 120.00144 * 179.97438 * 18 17 15 36 36 H 1.08003 * 119.98098 * 359.96754 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0063 6 6 3.9936 2.7199 -0.0117 7 6 4.1900 3.3768 -1.2124 8 6 4.5771 4.7032 -1.2213 9 6 4.7789 5.3739 -0.0245 10 8 5.1650 6.6776 -0.0310 11 6 6.4714 6.9273 0.1507 12 8 7.2584 6.0127 0.2129 13 6 6.9564 8.3486 0.2771 14 16 8.7513 8.3550 0.5111 15 6 9.0385 10.0896 0.6264 16 1 8.2116 10.7802 0.5501 17 6 10.3275 10.5686 0.8152 18 7 10.5421 11.8644 0.9018 19 14 11.7576 9.3741 0.9478 20 1 12.3168 9.1194 -0.4041 21 1 12.8107 9.9573 1.8172 22 1 11.2822 8.0960 1.5356 23 6 4.5865 4.7111 1.1811 24 9 4.7826 5.3610 2.3492 25 6 4.1942 3.3845 1.1838 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9596 0.7829 0.8834 30 1 3.9524 0.7784 -0.8966 31 1 4.0365 2.8537 -2.1447 32 1 4.7264 5.2162 -2.1600 33 1 6.7065 8.8997 -0.6294 34 1 6.4763 8.8215 1.1338 35 1 11.4429 12.1991 1.0342 36 1 4.0441 2.8679 2.1203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781196956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:05 Heat of formation + Delta-G solvation = -177.838025 kcal Electronic energy + Delta-G solvation = -24197.847852 eV Core-core repulsion = 20074.900629 eV Total energy + Delta-G solvation = -4122.947222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.05397 -41.23687 -40.87824 -39.00492 -37.04497 -36.61946 -33.00720 -32.51537 -31.01209 -30.21043 -28.79197 -27.12082 -25.70974 -23.45988 -23.31794 -21.64764 -20.89021 -18.38421 -18.11589 -17.96692 -17.54904 -17.41951 -16.83040 -16.67440 -16.56300 -15.60115 -15.48292 -15.16272 -14.95267 -14.46118 -14.15877 -14.12545 -14.05951 -13.60471 -13.42867 -13.00341 -12.87090 -12.64360 -12.43244 -12.27389 -12.21301 -11.90401 -11.37281 -11.26409 -11.07304 -10.95885 -10.93914 -10.80167 -10.45804 -9.90862 -9.25038 -9.07894 -8.87907 -8.66058 -7.06419 -6.35553 -4.10707 0.53194 0.86476 1.75523 2.17141 2.31430 2.41246 2.98776 3.27220 3.32916 3.43690 3.49156 3.79170 4.05854 4.25576 4.28012 4.43842 4.57836 4.65520 4.69366 4.72913 4.75471 4.86134 4.94890 5.00765 5.03089 5.07864 5.45966 5.56775 5.61772 5.65961 5.81706 5.88428 5.91035 5.97433 6.25475 6.64063 7.28583 7.87031 7.91997 8.36048 9.09102 10.73347 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.039104 B = 0.002224 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.863154 B =12588.496578 C =12697.961061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.459 3.541 4 O -0.494 6.494 5 C -0.071 4.071 6 C -0.056 4.056 7 C -0.099 4.099 8 C -0.088 4.088 9 C 0.066 3.934 10 O -0.291 6.291 11 C 0.476 3.524 12 O -0.469 6.469 13 C -0.097 4.097 14 S -0.136 6.136 15 C -0.523 4.523 16 H 0.093 0.907 17 C 0.098 3.902 18 N -0.875 5.875 19 Si 0.856 3.144 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.236 1.236 23 C 0.101 3.899 24 F -0.126 7.126 25 C -0.125 4.125 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.272 0.728 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.472 -24.482 -3.468 30.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.301 3.699 4 O -0.380 6.380 5 C -0.108 4.108 6 C -0.056 4.056 7 C -0.117 4.117 8 C -0.106 4.106 9 C 0.023 3.977 10 O -0.207 6.207 11 C 0.317 3.683 12 O -0.351 6.351 13 C -0.245 4.245 14 S 0.090 5.910 15 C -0.671 4.671 16 H 0.111 0.889 17 C -0.111 4.111 18 N -0.511 5.511 19 Si 0.680 3.320 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.160 1.160 23 C 0.081 3.919 24 F -0.104 7.104 25 C -0.144 4.144 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.579 -25.153 -3.328 30.867 hybrid contribution -0.362 1.000 0.265 1.096 sum -17.940 -24.153 -3.063 30.242 Atomic orbital electron populations 1.23293 0.75980 1.03800 1.02761 1.86492 1.23704 1.33315 1.84270 1.23622 0.91813 0.81520 0.72908 1.90738 1.66992 1.36213 1.44077 1.20280 0.88136 0.94863 1.07549 1.19055 0.99461 0.94249 0.92853 1.20890 0.99274 0.93741 0.97794 1.21123 0.98369 0.94022 0.97096 1.18602 1.02473 0.84222 0.92396 1.84716 1.28531 1.23991 1.83471 1.23858 0.79094 0.92879 0.72423 1.90694 1.54453 1.46532 1.43456 1.23042 1.03115 0.90721 1.07592 1.84832 0.97624 1.12963 1.95565 1.22248 0.98196 0.88325 1.58309 0.88929 1.24688 0.98238 0.95095 0.93120 1.69930 1.22494 1.11963 1.46742 0.86754 0.82646 0.82848 0.79710 1.19083 1.19719 1.15976 1.17845 1.02080 0.91090 0.80910 1.91551 1.92468 1.81067 1.45325 1.20839 1.01750 0.92333 0.99464 0.91755 0.87967 0.91775 0.86103 0.85918 0.84403 0.83705 0.86731 0.86681 0.91771 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.54 10.56 -39.24 -0.41 -2.96 16 3 C 0.46 3.75 7.95 36.01 0.29 4.04 16 4 O -0.49 -5.78 15.78 -18.75 -0.30 -6.07 16 5 C -0.07 -0.41 5.94 -29.03 -0.17 -0.58 16 6 C -0.06 -0.52 4.37 -104.61 -0.46 -0.97 16 7 C -0.10 -0.93 9.69 -39.59 -0.38 -1.31 16 8 C -0.09 -1.04 9.99 -39.44 -0.39 -1.43 16 9 C 0.07 0.99 4.96 -39.17 -0.19 0.80 16 10 O -0.29 -4.87 9.89 -23.72 -0.23 -5.11 16 11 C 0.48 9.02 7.88 36.01 0.28 9.30 16 12 O -0.47 -9.98 15.60 -18.75 -0.29 -10.27 16 13 C -0.10 -1.91 6.27 36.01 0.23 -1.69 16 14 S -0.14 -3.38 18.55 -107.50 -1.99 -5.37 16 15 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 16 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 17 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 18 N -0.88 -26.00 13.97 55.49 0.78 -25.23 16 19 Si 0.86 21.29 27.74 -169.99 -4.71 16.58 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 23 C 0.10 1.47 7.25 -39.29 -0.28 1.18 16 24 F -0.13 -2.04 17.11 2.25 0.04 -2.01 16 25 C -0.13 -1.39 9.67 -39.54 -0.38 -1.77 16 26 H 0.06 0.33 8.13 -51.93 -0.42 -0.10 16 27 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.34 8.13 -51.93 -0.42 -0.09 16 29 H 0.12 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.12 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 33 H 0.11 2.06 8.14 -51.92 -0.42 1.63 16 34 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -35.27 347.60 -5.88 -41.15 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -3.80 Total: -2.99 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.19 Total: -2.97 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.78 Total: -25.23 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.24 Total: -24.41 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.58 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.27 -5.88 -41.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781196956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.684 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds