Wall clock time and date at job start Tue Mar 31 2020 15:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00302 * 2 1 4 4 O 1.20826 * 119.99960 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00061 * 180.27476 * 3 2 1 6 6 C 1.50699 * 109.46734 * 179.72885 * 5 3 2 7 7 C 1.38271 * 119.93327 * 269.72216 * 6 5 3 8 8 C 1.38172 * 120.09842 * 179.76929 * 7 6 5 9 9 C 1.38677 * 119.96459 * 0.49225 * 8 7 6 10 10 O 1.35972 * 120.05994 * 179.74085 * 9 8 7 11 11 C 1.34245 * 117.00054 * 260.96882 * 10 9 8 12 12 O 1.20827 * 120.00306 * 5.39156 * 11 10 9 13 13 C 1.50708 * 119.99779 * 185.38507 * 11 10 9 14 14 S 1.81004 * 109.46852 * 180.02562 * 13 11 10 15 15 C 1.76202 * 99.99628 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.38797 * 119.99846 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00145 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99989 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47246 * 89.99918 * 19 17 15 21 21 H 1.48498 * 109.47226 * 210.00288 * 19 17 15 22 22 H 1.48497 * 109.47150 * 330.00211 * 19 17 15 23 23 C 1.38913 * 119.87379 * 359.76625 * 9 8 7 24 24 F 1.35103 * 120.04842 * 179.97438 * 23 9 8 25 25 C 1.38241 * 119.93929 * 90.00839 * 6 5 3 26 26 H 1.09000 * 109.47594 * 59.99098 * 1 2 3 27 27 H 1.09000 * 109.47674 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46912 * 299.99486 * 1 2 3 29 29 H 1.08996 * 109.46735 * 299.72747 * 5 3 2 30 30 H 1.08996 * 109.46540 * 59.73212 * 5 3 2 31 31 H 1.08002 * 119.95638 * 0.02748 * 7 6 5 32 32 H 1.08005 * 120.02158 * 180.23474 * 8 7 6 33 33 H 1.08991 * 109.47082 * 300.00525 * 13 11 10 34 34 H 1.09003 * 109.46719 * 60.00429 * 13 11 10 35 35 H 0.97004 * 120.00144 * 179.97438 * 18 17 15 36 36 H 1.08003 * 119.98098 * 359.96754 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0063 6 6 3.9936 2.7199 -0.0117 7 6 4.1900 3.3768 -1.2124 8 6 4.5771 4.7032 -1.2213 9 6 4.7789 5.3739 -0.0245 10 8 5.1650 6.6776 -0.0310 11 6 6.4714 6.9273 0.1507 12 8 7.2584 6.0127 0.2129 13 6 6.9564 8.3486 0.2771 14 16 8.7513 8.3550 0.5111 15 6 9.0385 10.0896 0.6264 16 1 8.2116 10.7802 0.5501 17 6 10.3275 10.5686 0.8152 18 7 10.5421 11.8644 0.9018 19 14 11.7576 9.3741 0.9478 20 1 12.3168 9.1194 -0.4041 21 1 12.8107 9.9573 1.8172 22 1 11.2822 8.0960 1.5356 23 6 4.5865 4.7111 1.1811 24 9 4.7826 5.3610 2.3492 25 6 4.1942 3.3845 1.1838 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9596 0.7829 0.8834 30 1 3.9524 0.7784 -0.8966 31 1 4.0365 2.8537 -2.1447 32 1 4.7264 5.2162 -2.1600 33 1 6.7065 8.8997 -0.6294 34 1 6.4763 8.8215 1.1338 35 1 11.4429 12.1991 1.0342 36 1 4.0441 2.8679 2.1203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781196956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:04 Heat of formation + Delta-G solvation = -198.629076 kcal Electronic energy + Delta-G solvation = -24198.749419 eV Core-core repulsion = 20074.900629 eV Total energy + Delta-G solvation = -4123.848790 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.18206 -42.45666 -41.57955 -39.94012 -38.21462 -37.42907 -34.71379 -33.79477 -31.87889 -31.66990 -29.50802 -27.95887 -27.69290 -24.44321 -24.29106 -22.63725 -21.70291 -20.09555 -19.56110 -18.68660 -18.53013 -18.38945 -18.00927 -17.49022 -17.32925 -17.15060 -16.81129 -16.72566 -16.31619 -15.71874 -15.29969 -15.00805 -14.90240 -14.67789 -14.57547 -14.53877 -14.10612 -13.46870 -13.44088 -13.29180 -13.05249 -13.01575 -12.89656 -12.80977 -12.75201 -12.04682 -12.01293 -11.85151 -11.78648 -11.60977 -11.20328 -10.69352 -10.13728 -9.83223 -9.11190 -8.54413 -6.29342 -0.42745 -0.01244 0.72374 0.82569 1.17795 1.30568 1.33090 1.47661 1.66004 1.82353 2.21750 2.43930 2.60549 2.83489 2.89128 3.34153 3.47705 3.59774 3.91313 3.97775 4.01858 4.04917 4.28769 4.29733 4.33198 4.36375 4.42285 4.60112 4.73194 4.77161 4.82923 4.91894 5.12478 5.19385 5.38775 5.62933 5.67630 6.09445 6.50569 6.71952 6.88882 8.57808 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.039104 B = 0.002224 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.863154 B =12588.496578 C =12697.961061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.538 6.538 5 C -0.067 4.067 6 C -0.046 4.046 7 C -0.090 4.090 8 C -0.093 4.093 9 C 0.022 3.978 10 O -0.286 6.286 11 C 0.484 3.516 12 O -0.496 6.496 13 C -0.089 4.089 14 S -0.155 6.155 15 C -0.534 4.534 16 H 0.066 0.934 17 C 0.048 3.952 18 N -0.913 5.913 19 Si 0.914 3.086 20 H -0.258 1.258 21 H -0.258 1.258 22 H -0.236 1.236 23 C 0.068 3.932 24 F -0.146 7.146 25 C -0.127 4.127 26 H 0.061 0.939 27 H 0.131 0.869 28 H 0.057 0.943 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.279 0.721 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.966 -27.934 -4.426 34.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.427 6.427 5 C -0.103 4.103 6 C -0.046 4.046 7 C -0.108 4.108 8 C -0.111 4.111 9 C -0.020 4.020 10 O -0.202 6.202 11 C 0.327 3.673 12 O -0.381 6.381 13 C -0.236 4.236 14 S 0.072 5.928 15 C -0.681 4.681 16 H 0.084 0.916 17 C -0.158 4.158 18 N -0.550 5.550 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.182 1.182 22 H -0.160 1.160 23 C 0.048 3.952 24 F -0.125 7.125 25 C -0.146 4.146 26 H 0.080 0.920 27 H 0.149 0.851 28 H 0.076 0.924 29 H 0.166 0.834 30 H 0.177 0.823 31 H 0.196 0.804 32 H 0.177 0.823 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.097 -28.619 -4.289 34.131 hybrid contribution -0.459 1.934 0.512 2.053 sum -18.555 -26.685 -3.777 32.721 Atomic orbital electron populations 1.23519 0.74991 1.05617 1.02351 1.86491 1.24720 1.32639 1.83772 1.24020 0.92577 0.81139 0.71537 1.90739 1.68092 1.37547 1.46325 1.20449 0.86508 0.92650 1.10726 1.19514 0.97144 0.95983 0.92000 1.21412 0.97070 0.92714 0.99621 1.21438 0.98008 0.95138 0.96501 1.19068 1.05148 0.83836 0.93971 1.84679 1.26754 1.25842 1.82898 1.23521 0.79952 0.91951 0.71848 1.90668 1.55410 1.47109 1.44895 1.22966 0.99393 0.92217 1.09067 1.84634 1.02360 1.10033 1.95781 1.22391 0.97736 0.90055 1.57959 0.91589 1.25556 1.00814 0.96698 0.92753 1.70011 1.23561 1.13658 1.47753 0.85879 0.79693 0.80659 0.80219 1.18291 1.18178 1.15978 1.18291 1.04122 0.92559 0.80229 1.91487 1.92933 1.81690 1.46342 1.21195 1.00873 0.91049 1.01445 0.92043 0.85078 0.92398 0.83376 0.82257 0.80441 0.82271 0.84831 0.85615 0.91177 0.81917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.42 16 2 O -0.36 -3.99 10.56 -51.35 -0.54 -4.54 16 3 C 0.46 6.19 7.95 71.24 0.57 6.75 16 4 O -0.54 -11.65 15.78 21.97 0.35 -11.31 16 5 C -0.07 -0.48 5.94 29.10 0.17 -0.30 16 6 C -0.05 -0.71 4.37 -19.86 -0.09 -0.80 16 7 C -0.09 -1.41 9.69 22.26 0.22 -1.19 16 8 C -0.09 -2.05 9.99 22.36 0.22 -1.83 16 9 C 0.02 0.66 4.96 22.54 0.11 0.77 16 10 O -0.29 -9.68 9.89 4.19 0.04 -9.64 16 11 C 0.48 18.45 7.88 71.24 0.56 19.01 16 12 O -0.50 -21.19 15.60 21.96 0.34 -20.85 16 13 C -0.09 -3.50 6.27 71.24 0.45 -3.06 16 14 S -0.15 -7.70 18.55 -56.49 -1.05 -8.74 16 15 C -0.53 -30.77 10.04 67.95 0.68 -30.09 16 16 H 0.07 4.02 8.03 -2.91 -0.02 4.00 16 17 C 0.05 2.77 5.50 84.86 0.47 3.24 16 18 N -0.91 -54.98 13.97 21.65 0.30 -54.68 16 19 Si 0.91 43.93 27.74 68.60 1.90 45.83 16 20 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.24 -11.26 6.74 99.48 0.67 -10.59 16 23 C 0.07 1.98 7.25 22.46 0.16 2.14 16 24 F -0.15 -4.91 17.11 44.97 0.77 -4.14 16 25 C -0.13 -2.64 9.67 22.29 0.22 -2.42 16 26 H 0.06 0.53 8.13 -2.39 -0.02 0.51 16 27 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 29 H 0.15 0.35 8.08 -2.39 -0.02 0.34 16 30 H 0.16 0.07 8.08 -2.39 -0.02 0.05 16 31 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.13 4.77 8.14 -2.40 -0.02 4.75 16 34 H 0.13 4.71 8.14 -2.39 -0.02 4.69 16 35 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -78.92 347.60 8.13 -70.79 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.08 Total: 3.62 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 4.94 Total: -6.35 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.30 Total: -54.68 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: 0.19 Total: -46.33 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.77 Total: -4.14 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.90 Total: 45.83 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -1.05 Total: -8.74 kcal Total: -78.92 8.13 -70.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781196956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.843 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds