Wall clock time and date at job start Tue Mar 31 2020 15:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34734 * 117.00137 * 2 1 4 4 O 1.21486 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.47600 * 120.00126 * 180.02562 * 3 2 1 6 6 C 1.39727 * 120.11813 * 359.97438 * 5 3 2 7 7 C 1.37800 * 119.86630 * 180.02562 * 6 5 3 8 8 C 1.38691 * 120.12833 * 359.97438 * 7 6 5 9 9 F 1.35097 * 119.87581 * 179.97438 * 8 7 6 10 10 C 1.38637 * 120.24747 * 359.97438 * 8 7 6 11 11 C 1.50703 * 119.94046 * 179.97438 * 10 8 7 12 12 O 1.45196 * 109.47396 * 180.02562 * 11 10 8 13 13 C 1.34234 * 116.99938 * 180.02562 * 12 11 10 14 14 O 1.20826 * 119.99712 * 359.72483 * 13 12 11 15 15 C 1.50700 * 120.00068 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.46929 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99783 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00084 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00055 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99881 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00127 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47160 * 89.99474 * 21 19 17 23 23 H 1.48502 * 109.47515 * 209.99741 * 21 19 17 24 24 H 1.48503 * 109.46941 * 329.99699 * 21 19 17 25 25 C 1.37839 * 120.12614 * 0.28081 * 10 8 7 26 26 H 1.08997 * 109.47010 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 300.00485 * 1 2 3 28 28 H 1.08997 * 109.46685 * 59.99771 * 1 2 3 29 29 H 1.07995 * 120.06977 * 359.97438 * 6 5 3 30 30 H 1.08004 * 119.93215 * 179.97438 * 7 6 5 31 31 H 1.09012 * 109.46606 * 60.00340 * 11 10 8 32 32 H 1.08996 * 109.47079 * 300.00918 * 11 10 8 33 33 H 1.08992 * 109.47012 * 300.00044 * 15 13 12 34 34 H 1.08999 * 109.46550 * 59.99877 * 15 13 12 35 35 H 0.97005 * 119.99703 * 179.97438 * 20 19 17 36 36 H 1.08000 * 120.06412 * 179.70100 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4021 2.2194 -0.0005 5 6 3.5377 1.2777 -0.0006 6 6 4.3011 0.1074 -0.0006 7 6 5.6769 0.1856 -0.0006 8 6 6.3039 1.4227 -0.0011 9 9 7.6530 1.4934 -0.0006 10 6 5.5513 2.5870 -0.0022 11 6 6.2398 3.9276 -0.0022 12 8 5.2432 4.9836 -0.0028 13 6 5.6948 6.2477 -0.0034 14 8 6.8834 6.4645 0.0016 15 6 4.7192 7.3963 -0.0035 16 16 5.6294 8.9608 -0.0036 17 6 4.2834 10.0978 -0.0044 18 1 3.2673 9.7318 -0.0043 19 6 4.5288 11.4639 -0.0042 20 7 3.5232 12.3133 -0.0053 21 14 6.2862 12.0971 -0.0037 22 1 6.7523 12.2649 -1.4037 23 1 6.3408 13.4055 0.6964 24 1 7.1627 11.1241 0.6965 25 6 4.1745 2.5209 0.0031 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 3.8140 -0.8564 0.0003 30 1 6.2680 -0.7183 -0.0002 31 1 6.8635 4.0157 -0.8919 32 1 6.8622 4.0164 0.8882 33 1 4.0922 7.3403 -0.8931 34 1 4.0928 7.3409 0.8868 35 1 3.6948 13.2680 -0.0048 36 1 3.5893 3.4286 0.0072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781228662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:53 Heat of formation + Delta-G solvation = -187.809012 kcal Electronic energy + Delta-G solvation = -23989.370352 eV Core-core repulsion = 19865.990755 eV Total energy + Delta-G solvation = -4123.379597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.47076 -40.97386 -40.31789 -39.11139 -36.77195 -36.43410 -32.90381 -32.49785 -31.53551 -29.97645 -28.21643 -26.80185 -25.67543 -24.46303 -22.90773 -21.17020 -21.03319 -18.45927 -18.17331 -17.85556 -17.39477 -17.27492 -16.82708 -16.65702 -16.35373 -16.02442 -15.92215 -15.04110 -14.80379 -14.35522 -14.14889 -14.11376 -13.90273 -13.76860 -13.67197 -13.25437 -12.86297 -12.68158 -12.50501 -12.22136 -12.17772 -11.60081 -11.33914 -11.18576 -11.05934 -10.94054 -10.92735 -10.75938 -10.28192 -9.88915 -9.53778 -9.24642 -9.06147 -8.63499 -7.03804 -6.33915 -4.08589 0.04603 0.65564 2.00563 2.23279 2.27943 2.44616 3.00828 3.10580 3.28810 3.44723 3.48311 3.63024 4.00628 4.19720 4.26652 4.28043 4.56562 4.62935 4.73771 4.75135 4.82961 4.99146 5.02507 5.04934 5.08371 5.16702 5.23383 5.42385 5.50292 5.63310 5.67021 5.72937 5.93970 5.95991 6.19089 6.44837 7.34337 7.88792 7.93084 8.38140 9.10970 10.75136 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002611 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.055701 B =10721.421001 C =12529.726426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.509 3.491 4 O -0.493 6.493 5 C -0.138 4.138 6 C -0.033 4.033 7 C -0.164 4.164 8 C 0.145 3.855 9 F -0.126 7.126 10 C -0.134 4.134 11 C 0.111 3.889 12 O -0.355 6.355 13 C 0.482 3.518 14 O -0.486 6.486 15 C -0.100 4.100 16 S -0.139 6.139 17 C -0.522 4.522 18 H 0.092 0.908 19 C 0.097 3.903 20 N -0.877 5.877 21 Si 0.856 3.144 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.235 1.235 25 C -0.004 4.004 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.272 0.728 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -29.937 0.096 29.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.353 3.647 4 O -0.381 6.381 5 C -0.139 4.139 6 C -0.051 4.051 7 C -0.183 4.183 8 C 0.125 3.875 9 F -0.104 7.104 10 C -0.135 4.135 11 C 0.037 3.963 12 O -0.273 6.273 13 C 0.323 3.677 14 O -0.371 6.371 15 C -0.248 4.248 16 S 0.087 5.913 17 C -0.670 4.670 18 H 0.110 0.890 19 C -0.112 4.112 20 N -0.513 5.513 21 Si 0.681 3.319 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.160 1.160 25 C -0.022 4.022 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.168 0.832 30 H 0.167 0.833 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.728 -29.209 0.101 29.218 hybrid contribution -0.598 0.275 -0.033 0.659 sum 0.130 -28.934 0.068 28.934 Atomic orbital electron populations 1.23322 0.75514 1.03871 1.02997 1.86511 1.23914 1.32468 1.84485 1.21001 0.88825 0.81684 0.73196 1.90909 1.66544 1.35851 1.44819 1.19128 0.89635 0.94630 1.10547 1.21345 0.92615 0.98522 0.92667 1.21082 0.95265 0.96539 1.05407 1.17683 0.76994 0.93606 0.99222 1.91559 1.28632 1.97184 1.93072 1.19591 0.94148 0.93398 1.06344 1.21486 0.89146 0.81523 1.04171 1.86452 1.40068 1.15740 1.85082 1.23306 0.89451 0.82608 0.72320 1.90684 1.17678 1.84688 1.44041 1.23026 1.00339 0.93776 1.07613 1.84804 1.13634 0.95256 1.97576 1.22258 0.93036 0.92376 1.59317 0.88984 1.24697 0.97794 0.95619 0.93097 1.69934 1.30950 1.02810 1.47577 0.86748 0.84967 0.80205 0.79986 1.19119 1.19780 1.15954 1.21102 0.92856 0.97927 0.90324 0.87849 0.91586 0.91579 0.83203 0.83309 0.89049 0.89052 0.86978 0.86920 0.91799 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.28 16 2 O -0.36 -2.96 9.81 -40.58 -0.40 -3.36 16 3 C 0.51 5.37 7.89 34.55 0.27 5.64 16 4 O -0.49 -6.76 16.13 -19.25 -0.31 -7.07 16 5 C -0.14 -1.30 5.87 -104.98 -0.62 -1.92 16 6 C -0.03 -0.22 9.61 -39.19 -0.38 -0.60 16 7 C -0.16 -1.09 10.01 -39.57 -0.40 -1.48 16 8 C 0.14 1.29 7.25 -39.27 -0.28 1.00 16 9 F -0.13 -1.21 16.79 2.25 0.04 -1.17 16 10 C -0.13 -1.39 5.88 -104.62 -0.62 -2.01 16 11 C 0.11 1.34 5.43 36.01 0.20 1.54 16 12 O -0.36 -5.19 8.68 -39.27 -0.34 -5.53 16 13 C 0.48 8.56 7.98 36.01 0.29 8.84 16 14 O -0.49 -9.83 15.61 -18.75 -0.29 -10.12 16 15 C -0.10 -1.92 6.27 36.01 0.23 -1.70 16 16 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 17 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 18 H 0.09 2.73 8.03 -52.49 -0.42 2.30 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.19 13.97 55.49 0.78 -25.41 16 21 Si 0.86 21.36 27.74 -169.99 -4.71 16.64 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 25 C 0.00 -0.04 8.92 -39.19 -0.35 -0.39 16 26 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.15 0.66 7.61 -52.49 -0.40 0.26 16 30 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 31 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 32 H 0.09 1.08 8.13 -51.93 -0.42 0.65 16 33 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 34 H 0.11 2.03 8.14 -51.92 -0.42 1.61 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.16 1.94 6.57 -52.49 -0.34 1.60 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -33.58 344.99 -6.12 -39.70 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -3.70 Total: -1.88 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.38 Total: -1.57 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.78 Total: -25.41 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -1.34 Total: -26.08 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.58 -6.12 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781228662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.110 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds