Wall clock time and date at job start Tue Mar 31 2020 15:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34734 * 117.00137 * 2 1 4 4 O 1.21486 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.47600 * 120.00126 * 180.02562 * 3 2 1 6 6 C 1.39727 * 120.11813 * 359.97438 * 5 3 2 7 7 C 1.37800 * 119.86630 * 180.02562 * 6 5 3 8 8 C 1.38691 * 120.12833 * 359.97438 * 7 6 5 9 9 F 1.35097 * 119.87581 * 179.97438 * 8 7 6 10 10 C 1.38637 * 120.24747 * 359.97438 * 8 7 6 11 11 C 1.50703 * 119.94046 * 179.97438 * 10 8 7 12 12 O 1.45196 * 109.47396 * 180.02562 * 11 10 8 13 13 C 1.34234 * 116.99938 * 180.02562 * 12 11 10 14 14 O 1.20826 * 119.99712 * 359.72483 * 13 12 11 15 15 C 1.50700 * 120.00068 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.46929 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99783 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00084 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00055 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99881 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00127 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47160 * 89.99474 * 21 19 17 23 23 H 1.48502 * 109.47515 * 209.99741 * 21 19 17 24 24 H 1.48503 * 109.46941 * 329.99699 * 21 19 17 25 25 C 1.37839 * 120.12614 * 0.28081 * 10 8 7 26 26 H 1.08997 * 109.47010 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 300.00485 * 1 2 3 28 28 H 1.08997 * 109.46685 * 59.99771 * 1 2 3 29 29 H 1.07995 * 120.06977 * 359.97438 * 6 5 3 30 30 H 1.08004 * 119.93215 * 179.97438 * 7 6 5 31 31 H 1.09012 * 109.46606 * 60.00340 * 11 10 8 32 32 H 1.08996 * 109.47079 * 300.00918 * 11 10 8 33 33 H 1.08992 * 109.47012 * 300.00044 * 15 13 12 34 34 H 1.08999 * 109.46550 * 59.99877 * 15 13 12 35 35 H 0.97005 * 119.99703 * 179.97438 * 20 19 17 36 36 H 1.08000 * 120.06412 * 179.70100 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4021 2.2194 -0.0005 5 6 3.5377 1.2777 -0.0006 6 6 4.3011 0.1074 -0.0006 7 6 5.6769 0.1856 -0.0006 8 6 6.3039 1.4227 -0.0011 9 9 7.6530 1.4934 -0.0006 10 6 5.5513 2.5870 -0.0022 11 6 6.2398 3.9276 -0.0022 12 8 5.2432 4.9836 -0.0028 13 6 5.6948 6.2477 -0.0034 14 8 6.8834 6.4645 0.0016 15 6 4.7192 7.3963 -0.0035 16 16 5.6294 8.9608 -0.0036 17 6 4.2834 10.0978 -0.0044 18 1 3.2673 9.7318 -0.0043 19 6 4.5288 11.4639 -0.0042 20 7 3.5232 12.3133 -0.0053 21 14 6.2862 12.0971 -0.0037 22 1 6.7523 12.2649 -1.4037 23 1 6.3408 13.4055 0.6964 24 1 7.1627 11.1241 0.6965 25 6 4.1745 2.5209 0.0031 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 3.8140 -0.8564 0.0003 30 1 6.2680 -0.7183 -0.0002 31 1 6.8635 4.0157 -0.8919 32 1 6.8622 4.0164 0.8882 33 1 4.0922 7.3403 -0.8931 34 1 4.0928 7.3409 0.8868 35 1 3.6948 13.2680 -0.0048 36 1 3.5893 3.4286 0.0072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781228662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:52 Heat of formation + Delta-G solvation = -207.024131 kcal Electronic energy + Delta-G solvation = -23990.203582 eV Core-core repulsion = 19865.990755 eV Total energy + Delta-G solvation = -4124.212827 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.18485 -41.83549 -41.54523 -39.88948 -37.75811 -37.53555 -34.70655 -33.75441 -32.22386 -31.46517 -28.82555 -27.96901 -27.60873 -25.17695 -23.74189 -22.32401 -21.89902 -20.01122 -19.17545 -18.91997 -18.56997 -18.12677 -17.96924 -17.44678 -17.30982 -17.12035 -17.03316 -16.84829 -15.98372 -15.52087 -15.36959 -15.06969 -14.93236 -14.73287 -14.48948 -14.44918 -14.09117 -13.91729 -13.42921 -13.24605 -13.23004 -13.03508 -13.00671 -12.81552 -12.26568 -12.12946 -11.91886 -11.84279 -11.76785 -11.73369 -11.19633 -10.65793 -10.21515 -9.97583 -9.08561 -8.53840 -6.27902 -0.66427 -0.01712 0.70309 0.99057 1.25182 1.31228 1.31315 1.48186 1.57300 1.74563 2.22494 2.40912 2.60423 2.84249 2.93331 3.17216 3.51167 3.57969 3.73552 3.89864 4.01281 4.02267 4.10185 4.25689 4.31518 4.34802 4.37924 4.50162 4.72221 4.75285 4.86125 4.91759 5.00915 5.17924 5.26255 5.54088 5.68353 6.10314 6.52115 6.58569 6.89792 8.58665 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002611 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.055701 B =10721.421001 C =12529.726426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.349 6.349 3 C 0.510 3.490 4 O -0.536 6.536 5 C -0.148 4.148 6 C -0.014 4.014 7 C -0.147 4.147 8 C 0.142 3.858 9 F -0.130 7.130 10 C -0.145 4.145 11 C 0.107 3.893 12 O -0.347 6.347 13 C 0.495 3.505 14 O -0.512 6.512 15 C -0.092 4.092 16 S -0.157 6.157 17 C -0.533 4.533 18 H 0.064 0.936 19 C 0.046 3.954 20 N -0.915 5.915 21 Si 0.915 3.085 22 H -0.260 1.260 23 H -0.258 1.258 24 H -0.233 1.233 25 C -0.019 4.019 26 H 0.140 0.860 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.182 0.818 30 H 0.185 0.815 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.278 0.722 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 -33.046 0.113 33.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.357 3.643 4 O -0.427 6.427 5 C -0.149 4.149 6 C -0.031 4.031 7 C -0.165 4.165 8 C 0.123 3.877 9 F -0.108 7.108 10 C -0.146 4.146 11 C 0.034 3.966 12 O -0.264 6.264 13 C 0.337 3.663 14 O -0.399 6.399 15 C -0.240 4.240 16 S 0.069 5.931 17 C -0.680 4.680 18 H 0.082 0.918 19 C -0.160 4.160 20 N -0.553 5.553 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.183 1.183 24 H -0.157 1.157 25 C -0.038 4.038 26 H 0.158 0.842 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.200 0.800 30 H 0.203 0.797 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.838 -32.360 0.119 32.412 hybrid contribution -1.067 0.993 -0.043 1.458 sum 0.771 -31.367 0.076 31.376 Atomic orbital electron populations 1.23616 0.74143 1.06104 1.02561 1.86503 1.25224 1.31011 1.83799 1.21259 0.89288 0.81712 0.72079 1.90891 1.67490 1.37293 1.47019 1.19161 0.89286 0.95135 1.11366 1.21676 0.92536 0.98668 0.90255 1.21457 0.95305 0.96687 1.03053 1.17828 0.76752 0.93907 0.99224 1.91556 1.28936 1.97234 1.93117 1.19417 0.94034 0.92970 1.08147 1.21707 0.88887 0.81476 1.04549 1.86432 1.40693 1.14963 1.84272 1.22811 0.88423 0.83303 0.71791 1.90676 1.18490 1.85251 1.45501 1.22950 1.00277 0.91723 1.09041 1.84594 1.13287 0.97488 1.97694 1.22410 0.93145 0.93612 1.58872 0.91792 1.25583 1.01781 0.95901 0.92705 1.70019 1.33126 1.03463 1.48674 0.85862 0.80025 0.80090 0.80362 1.18504 1.18252 1.15701 1.20923 0.92923 0.98018 0.91906 0.84234 0.92085 0.92082 0.80031 0.79732 0.88756 0.88775 0.85632 0.85586 0.91215 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.49 16 2 O -0.35 -5.13 9.81 -56.44 -0.55 -5.68 16 3 C 0.51 10.44 7.89 70.29 0.55 11.00 16 4 O -0.54 -15.08 16.13 19.88 0.32 -14.76 16 5 C -0.15 -2.59 5.87 -20.10 -0.12 -2.70 16 6 C -0.01 -0.13 9.61 22.53 0.22 0.08 16 7 C -0.15 -1.37 10.01 22.27 0.22 -1.14 16 8 C 0.14 2.21 7.25 22.47 0.16 2.37 16 9 F -0.13 -2.21 16.79 44.97 0.75 -1.46 16 10 C -0.14 -2.88 5.88 -19.86 -0.12 -3.00 16 11 C 0.11 2.56 5.43 71.24 0.39 2.94 16 12 O -0.35 -10.08 8.68 -51.46 -0.45 -10.53 16 13 C 0.49 17.42 7.98 71.24 0.57 17.98 16 14 O -0.51 -20.52 15.61 21.96 0.34 -20.18 16 15 C -0.09 -3.53 6.27 71.24 0.45 -3.09 16 16 S -0.16 -7.75 18.55 -56.49 -1.05 -8.80 16 17 C -0.53 -30.79 10.04 67.95 0.68 -30.10 16 18 H 0.06 3.93 8.03 -2.91 -0.02 3.90 16 19 C 0.05 2.68 5.50 84.86 0.47 3.15 16 20 N -0.92 -55.57 13.97 21.65 0.30 -55.27 16 21 Si 0.92 44.09 27.74 68.60 1.90 46.00 16 22 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.23 -11.07 6.74 99.48 0.67 -10.40 16 25 C -0.02 -0.41 8.92 22.52 0.20 -0.21 16 26 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.18 0.69 7.61 -2.91 -0.02 0.67 16 30 H 0.19 0.47 8.06 -2.91 -0.02 0.44 16 31 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.09 2.18 8.13 -2.39 -0.02 2.16 16 33 H 0.13 4.51 8.14 -2.40 -0.02 4.50 16 34 H 0.13 4.53 8.14 -2.40 -0.02 4.51 16 35 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 36 H 0.14 3.54 6.57 -2.91 -0.02 3.52 16 Total: -1.00 -73.95 344.99 7.54 -66.41 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.09 Total: 5.50 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 4.87 Total: -1.22 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.30 Total: -55.27 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -0.34 Total: -51.15 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.75 Total: -1.46 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 46.00 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -1.05 Total: -8.80 kcal Total: -73.95 7.54 -66.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781228662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.612 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds