Wall clock time and date at job start Tue Mar 31 2020 15:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50709 * 119.99743 * 2 1 4 4 N 1.46492 * 109.46864 * 125.00293 * 3 2 1 5 5 C 1.46501 * 120.00399 * 269.99810 * 4 3 2 6 6 C 1.50697 * 109.47361 * 270.00355 * 5 4 3 7 7 H 1.08004 * 120.00134 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00164 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99855 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47461 * 59.99527 * 10 8 6 12 12 H 1.48499 * 109.47112 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47094 * 299.99440 * 10 8 6 14 14 C 1.34777 * 120.00062 * 90.00121 * 4 3 2 15 15 S 1.71204 * 120.00159 * 180.02562 * 14 4 3 16 16 N 1.34780 * 119.99890 * 359.97438 * 14 4 3 17 17 C 1.40000 * 119.99805 * 185.52497 * 16 14 4 18 18 C 1.38883 * 120.03792 * 221.83736 * 17 16 14 19 19 C 1.38113 * 119.97530 * 180.02562 * 18 17 16 20 20 C 1.38457 * 120.05823 * 359.97438 * 19 18 17 21 21 F 1.35105 * 119.95677 * 180.27345 * 20 19 18 22 22 C 1.38564 * 120.08492 * 0.02562 * 20 19 18 23 23 Cl 1.73597 * 119.98975 * 180.02562 * 22 20 19 24 24 C 1.38233 * 120.01833 * 0.02562 * 22 20 19 25 25 H 1.07998 * 120.00184 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99918 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00184 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47161 * 5.00224 * 3 2 1 29 29 H 1.08995 * 109.47123 * 245.00361 * 3 2 1 30 30 H 1.09004 * 109.46805 * 30.00382 * 5 4 3 31 31 H 1.08995 * 109.47285 * 150.00064 * 5 4 3 32 32 H 0.96999 * 119.99902 * 179.97438 * 9 8 6 33 33 H 0.96992 * 119.99814 * 5.52481 * 16 14 4 34 34 H 1.08002 * 120.01175 * 359.97438 * 18 17 16 35 35 H 1.08001 * 119.96981 * 180.02562 * 19 18 17 36 36 H 1.08005 * 120.02983 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5590 1.8649 2.4248 6 6 2.8443 3.3436 2.4805 7 1 3.3040 3.8370 1.6368 8 6 2.5185 4.0666 3.6083 9 7 1.9583 3.4660 4.6355 10 14 2.8716 5.8997 3.6769 11 1 2.1358 6.5868 2.5853 12 1 2.4310 6.4399 4.9881 13 1 4.3295 6.1295 3.5122 14 6 4.2497 0.8663 0.9823 15 16 5.3367 0.8969 2.3046 16 7 4.6496 0.3755 -0.2076 17 6 5.9135 -0.2136 -0.3327 18 6 6.6950 0.0483 -1.4505 19 6 7.9414 -0.5340 -1.5728 20 6 8.4128 -1.3783 -0.5818 21 9 9.6346 -1.9424 -0.7009 22 6 7.6351 -1.6412 0.5345 23 17 8.2287 -2.6996 1.7759 24 6 6.3866 -1.0611 0.6598 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6212 1.4028 -0.9314 30 1 1.4889 1.6966 2.5460 31 1 3.0991 1.3603 3.2258 32 1 1.7295 3.9746 5.4291 33 1 4.0618 0.4305 -0.9772 34 1 6.3279 0.7064 -2.2242 35 1 8.5493 -0.3300 -2.4419 36 1 5.7801 -1.2662 1.5296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793248446.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:05 Heat of formation + Delta-G solvation = 29.782524 kcal Electronic energy + Delta-G solvation = -22647.118222 eV Core-core repulsion = 19006.176018 eV Total energy + Delta-G solvation = -3640.942204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.051 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.94450 -40.19474 -38.52501 -36.57705 -35.36400 -33.78539 -32.48437 -31.06661 -29.45277 -27.78553 -26.68799 -24.00435 -23.28410 -22.16320 -21.38690 -20.02643 -18.48052 -17.89878 -17.53838 -16.65107 -16.43670 -15.73659 -15.69592 -15.36453 -14.80874 -14.57724 -14.41021 -13.95179 -13.67720 -13.43507 -13.24033 -12.99039 -12.79357 -12.29641 -12.05290 -11.68009 -11.51053 -11.45414 -11.26631 -11.02167 -10.91785 -10.75332 -10.50194 -10.26608 -10.00243 -9.54237 -9.21762 -8.92410 -8.51867 -8.06199 -7.11517 -6.39966 -6.13114 -4.17874 0.79399 1.06933 1.89528 2.03679 2.07206 2.54102 3.06245 3.27712 3.33852 3.37779 3.41614 3.63744 4.08137 4.38516 4.56735 4.74950 4.87235 4.93984 5.07161 5.08081 5.23395 5.27209 5.51469 5.61466 5.77873 5.85550 5.88904 6.11129 6.28661 6.34499 6.46273 6.56481 6.75537 6.99694 7.30365 7.36766 7.75621 7.80154 8.03334 8.79956 9.45675 10.95396 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.003758 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.829616 B = 7448.445065 C = 8296.292426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.181 4.181 3 C 0.117 3.883 4 N -0.523 5.523 5 C 0.238 3.762 6 C -0.524 4.524 7 H 0.056 0.944 8 C 0.070 3.930 9 N -0.888 5.888 10 Si 0.899 3.101 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.546 3.454 15 S -0.616 6.616 16 N -0.653 5.653 17 C 0.154 3.846 18 C -0.102 4.102 19 C -0.138 4.138 20 C 0.101 3.899 21 F -0.131 7.131 22 C -0.066 4.066 23 Cl -0.050 7.050 24 C -0.038 4.038 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 -10.274 -15.685 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.200 4.200 3 C -0.009 4.009 4 N -0.225 5.225 5 C 0.119 3.881 6 C -0.563 4.563 7 H 0.074 0.926 8 C -0.133 4.133 9 N -0.526 5.526 10 Si 0.727 3.273 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.189 3.811 15 S -0.479 6.479 16 N -0.284 5.284 17 C 0.058 3.942 18 C -0.123 4.123 19 C -0.159 4.159 20 C 0.080 3.920 21 F -0.110 7.110 22 C -0.096 4.096 23 Cl -0.021 7.021 24 C -0.062 4.062 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.243 0.757 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.603 -10.194 -14.369 17.982 hybrid contribution -0.438 1.044 -0.829 1.403 sum 3.165 -9.149 -15.198 18.020 Atomic orbital electron populations 1.23920 0.95640 1.02351 0.98058 1.23218 0.96614 0.98056 1.02128 1.20956 0.93536 0.97297 0.89123 1.47981 1.06411 1.53096 1.14991 1.20048 0.96017 0.95120 0.76866 1.21052 1.41616 0.91882 1.01785 0.92581 1.24811 0.94702 0.98769 0.95033 1.69902 1.41235 1.36385 1.05107 0.86536 0.79051 0.84570 0.77161 1.20421 1.21086 1.19946 1.22415 0.88041 0.81386 0.89242 1.93288 1.46519 1.76830 1.31306 1.42298 1.16464 1.59395 1.10260 1.17155 0.85963 0.94888 0.96153 1.20792 0.92939 0.99997 0.98621 1.20710 0.96865 0.98920 0.99369 1.17376 0.81674 0.97833 0.95147 1.91514 1.40281 1.83227 1.95961 1.20598 0.96318 1.00805 0.91866 1.98378 1.87855 1.63674 1.52178 1.21279 0.94656 0.91505 0.98762 0.87904 0.88122 0.87342 0.87607 0.90824 0.94138 0.90236 0.92465 0.75695 0.84443 0.83708 0.81759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 14.32 29.01 0.42 -1.27 16 2 C -0.18 -2.08 9.85 -36.02 -0.35 -2.44 16 3 C 0.12 1.55 5.66 -5.19 -0.03 1.52 16 4 N -0.52 -9.59 2.44 -178.47 -0.44 -10.03 16 5 C 0.24 5.62 4.92 -5.19 -0.03 5.60 16 6 C -0.52 -13.81 9.39 -34.44 -0.32 -14.13 16 7 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 8 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 9 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 10 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.55 10.02 7.46 -86.91 -0.65 9.37 16 15 S -0.62 -14.23 24.45 -107.50 -2.63 -16.86 16 16 N -0.65 -8.82 5.20 -11.39 -0.06 -8.88 16 17 C 0.15 2.05 5.91 -83.67 -0.49 1.56 16 18 C -0.10 -1.07 9.97 -39.39 -0.39 -1.47 16 19 C -0.14 -1.44 10.02 -39.55 -0.40 -1.83 16 20 C 0.10 1.28 7.27 -39.38 -0.29 0.99 16 21 F -0.13 -1.70 16.83 2.25 0.04 -1.66 16 22 C -0.07 -0.93 6.32 -39.46 -0.25 -1.18 16 23 Cl -0.05 -0.70 28.61 -51.86 -1.48 -2.18 16 24 C -0.04 -0.56 7.64 -39.37 -0.30 -0.86 16 25 H 0.10 1.04 7.84 -52.49 -0.41 0.63 16 26 H 0.10 0.90 8.06 -52.49 -0.42 0.47 16 27 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.11 1.47 7.72 -51.93 -0.40 1.07 16 29 H 0.07 0.75 6.29 -51.93 -0.33 0.42 16 30 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.08 2.16 6.58 -51.93 -0.34 1.82 16 32 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 33 H 0.40 4.05 6.52 -40.82 -0.27 3.78 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.17 2.80 6.26 -49.81 -0.31 2.49 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -31.65 343.50 -10.57 -42.22 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.71 Total: 2.81 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -3.18 Total: -2.33 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.24 Total: -43.45 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -14.23 SS G_CDS: -2.63 Total: -16.86 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.65 -10.57 -42.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793248446.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.003 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds