Wall clock time and date at job start Tue Mar 31 2020 15:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50709 * 119.99743 * 2 1 4 4 N 1.46492 * 109.46864 * 125.00293 * 3 2 1 5 5 C 1.46501 * 120.00399 * 269.99810 * 4 3 2 6 6 C 1.50697 * 109.47361 * 270.00355 * 5 4 3 7 7 H 1.08004 * 120.00134 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00164 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99855 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47461 * 59.99527 * 10 8 6 12 12 H 1.48499 * 109.47112 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47094 * 299.99440 * 10 8 6 14 14 C 1.34777 * 120.00062 * 90.00121 * 4 3 2 15 15 S 1.71204 * 120.00159 * 180.02562 * 14 4 3 16 16 N 1.34780 * 119.99890 * 359.97438 * 14 4 3 17 17 C 1.40000 * 119.99805 * 185.52497 * 16 14 4 18 18 C 1.38883 * 120.03792 * 221.83736 * 17 16 14 19 19 C 1.38113 * 119.97530 * 180.02562 * 18 17 16 20 20 C 1.38457 * 120.05823 * 359.97438 * 19 18 17 21 21 F 1.35105 * 119.95677 * 180.27345 * 20 19 18 22 22 C 1.38564 * 120.08492 * 0.02562 * 20 19 18 23 23 Cl 1.73597 * 119.98975 * 180.02562 * 22 20 19 24 24 C 1.38233 * 120.01833 * 0.02562 * 22 20 19 25 25 H 1.07998 * 120.00184 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99918 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00184 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47161 * 5.00224 * 3 2 1 29 29 H 1.08995 * 109.47123 * 245.00361 * 3 2 1 30 30 H 1.09004 * 109.46805 * 30.00382 * 5 4 3 31 31 H 1.08995 * 109.47285 * 150.00064 * 5 4 3 32 32 H 0.96999 * 119.99902 * 179.97438 * 9 8 6 33 33 H 0.96992 * 119.99814 * 5.52481 * 16 14 4 34 34 H 1.08002 * 120.01175 * 359.97438 * 18 17 16 35 35 H 1.08001 * 119.96981 * 180.02562 * 19 18 17 36 36 H 1.08005 * 120.02983 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5590 1.8649 2.4248 6 6 2.8443 3.3436 2.4805 7 1 3.3040 3.8370 1.6368 8 6 2.5185 4.0666 3.6083 9 7 1.9583 3.4660 4.6355 10 14 2.8716 5.8997 3.6769 11 1 2.1358 6.5868 2.5853 12 1 2.4310 6.4399 4.9881 13 1 4.3295 6.1295 3.5122 14 6 4.2497 0.8663 0.9823 15 16 5.3367 0.8969 2.3046 16 7 4.6496 0.3755 -0.2076 17 6 5.9135 -0.2136 -0.3327 18 6 6.6950 0.0483 -1.4505 19 6 7.9414 -0.5340 -1.5728 20 6 8.4128 -1.3783 -0.5818 21 9 9.6346 -1.9424 -0.7009 22 6 7.6351 -1.6412 0.5345 23 17 8.2287 -2.6996 1.7759 24 6 6.3866 -1.0611 0.6598 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6212 1.4028 -0.9314 30 1 1.4889 1.6966 2.5460 31 1 3.0991 1.3603 3.2258 32 1 1.7295 3.9746 5.4291 33 1 4.0618 0.4305 -0.9772 34 1 6.3279 0.7064 -2.2242 35 1 8.5493 -0.3300 -2.4419 36 1 5.7801 -1.2662 1.5296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793248446.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:05 Heat of formation + Delta-G solvation = 13.248895 kcal Electronic energy + Delta-G solvation = -22647.835174 eV Core-core repulsion = 19006.176018 eV Total energy + Delta-G solvation = -3641.659156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.051 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.95643 -41.39799 -39.75946 -37.69106 -36.55415 -35.19632 -34.15445 -32.05913 -30.75038 -29.28892 -28.02469 -25.60600 -24.44761 -23.39508 -22.71483 -21.03093 -19.69760 -19.12948 -18.66860 -18.56602 -17.51227 -17.18451 -16.74926 -16.58585 -16.21061 -16.01643 -15.66741 -15.00536 -14.87469 -14.63485 -14.29718 -14.27098 -13.99871 -13.75218 -13.44144 -13.17363 -12.95792 -12.66947 -12.60101 -12.47225 -12.26544 -12.20467 -12.07770 -11.99553 -11.73480 -10.62361 -10.56396 -10.45776 -10.01878 -9.26725 -8.84128 -8.19739 -8.11570 -6.30586 -0.29583 0.07602 0.53542 0.86020 1.01784 1.28769 1.38783 1.44501 1.49570 1.65795 2.32512 2.42021 2.45084 3.08999 3.14489 3.66069 3.76904 3.94340 3.99021 3.99979 4.15566 4.30544 4.52384 4.61920 4.78063 4.91600 4.94683 4.97048 5.07223 5.14678 5.24586 5.50820 5.59378 5.63773 5.70715 5.74905 5.93395 6.01397 6.35392 6.73748 7.36197 8.88092 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.003758 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.829616 B = 7448.445065 C = 8296.292426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.195 4.195 3 C 0.112 3.888 4 N -0.524 5.524 5 C 0.257 3.743 6 C -0.527 4.527 7 H 0.053 0.947 8 C 0.019 3.981 9 N -0.922 5.922 10 Si 0.958 3.042 11 H -0.259 1.259 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.573 3.427 15 S -0.724 6.724 16 N -0.621 5.621 17 C 0.132 3.868 18 C -0.079 4.079 19 C -0.122 4.122 20 C 0.095 3.905 21 F -0.133 7.133 22 C -0.081 4.081 23 Cl -0.061 7.061 24 C -0.052 4.052 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.266 0.734 33 H 0.426 0.574 34 H 0.180 0.820 35 H 0.185 0.815 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 -9.522 -19.615 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.214 4.214 3 C -0.012 4.012 4 N -0.225 5.225 5 C 0.137 3.863 6 C -0.566 4.566 7 H 0.071 0.929 8 C -0.180 4.180 9 N -0.562 5.562 10 Si 0.784 3.216 11 H -0.184 1.184 12 H -0.208 1.208 13 H -0.210 1.210 14 C 0.212 3.788 15 S -0.590 6.590 16 N -0.253 5.253 17 C 0.037 3.963 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.075 3.925 21 F -0.112 7.112 22 C -0.111 4.111 23 Cl -0.032 7.032 24 C -0.076 4.076 25 H 0.124 0.876 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.270 0.730 34 H 0.197 0.803 35 H 0.202 0.798 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.308 -9.479 -18.406 20.966 hybrid contribution -0.365 0.708 0.242 0.833 sum 2.943 -8.771 -18.164 20.384 Atomic orbital electron populations 1.24155 0.95383 1.03430 0.95758 1.23114 0.96948 0.97261 1.04109 1.21300 0.93189 0.98291 0.88385 1.47742 1.07127 1.52622 1.14988 1.19396 0.94759 0.93715 0.78470 1.21304 1.40596 0.93170 1.01490 0.92920 1.25601 0.94731 1.02850 0.94866 1.70017 1.42618 1.37866 1.05666 0.85608 0.78223 0.80049 0.77754 1.18375 1.20811 1.20956 1.21720 0.86929 0.80890 0.89297 1.93514 1.49338 1.80659 1.35516 1.42019 1.16964 1.57286 1.09026 1.17394 0.86283 0.95447 0.97156 1.21196 0.92064 0.98979 0.97719 1.21171 0.96845 0.96735 0.99403 1.17628 0.81460 0.98214 0.95243 1.91512 1.40361 1.83362 1.95931 1.20715 0.96529 1.01413 0.92463 1.98366 1.87897 1.64038 1.52921 1.21056 0.94904 0.92973 0.98671 0.87635 0.86294 0.86833 0.88015 0.87022 0.94820 0.94282 0.92554 0.73010 0.80272 0.79763 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 14.32 67.78 0.97 -1.77 16 2 C -0.19 -4.04 9.85 25.65 0.25 -3.79 16 3 C 0.11 2.71 5.66 85.64 0.48 3.19 16 4 N -0.52 -18.98 2.44 -718.54 -1.75 -20.74 16 5 C 0.26 12.49 4.92 85.63 0.42 12.91 16 6 C -0.53 -28.04 9.39 25.60 0.24 -27.80 16 7 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 8 C 0.02 1.07 5.46 84.65 0.46 1.53 16 9 N -0.92 -53.78 13.29 21.45 0.28 -53.49 16 10 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 14 C 0.57 20.89 7.46 179.05 1.34 22.22 16 15 S -0.72 -35.09 24.45 -56.49 -1.38 -36.47 16 16 N -0.62 -15.39 5.20 -189.94 -0.99 -16.38 16 17 C 0.13 3.26 5.91 38.13 0.23 3.48 16 18 C -0.08 -1.31 9.97 22.39 0.22 -1.09 16 19 C -0.12 -2.02 10.02 22.29 0.22 -1.79 16 20 C 0.10 2.25 7.27 22.40 0.16 2.41 16 21 F -0.13 -3.22 16.83 44.97 0.76 -2.47 16 22 C -0.08 -2.31 6.32 22.35 0.14 -2.17 16 23 Cl -0.06 -1.79 28.61 -2.72 -0.08 -1.86 16 24 C -0.05 -1.58 7.64 22.41 0.17 -1.41 16 25 H 0.11 1.89 7.84 -2.91 -0.02 1.87 16 26 H 0.12 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.11 2.27 8.06 -2.91 -0.02 2.24 16 28 H 0.10 2.60 7.72 -2.39 -0.02 2.58 16 29 H 0.11 1.80 6.29 -2.39 -0.02 1.79 16 30 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 31 H 0.04 2.25 6.58 -2.39 -0.02 2.23 16 32 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.43 6.82 6.52 -92.71 -0.60 6.21 16 34 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 36 H 0.14 4.93 6.26 -4.61 -0.03 4.90 16 Total: -1.00 -74.03 343.50 4.69 -69.34 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.51 Total: 10.27 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.31 Total: 5.94 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -2.46 Total: -90.61 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.76 Total: -2.47 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -35.09 SS G_CDS: -1.38 Total: -36.47 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.86 kcal Total: -74.03 4.69 -69.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793248446.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.591 kcal (2) G-P(sol) polarization free energy of solvation -74.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds