Wall clock time and date at job start Tue Mar 31 2020 15:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38195 * 119.96164 * 2 1 4 4 C 1.38664 * 119.95626 * 179.97438 * 3 2 1 5 5 O 1.35924 * 120.05691 * 179.97438 * 4 3 2 6 6 C 1.42903 * 117.00387 * 359.97438 * 5 4 3 7 7 C 1.50694 * 109.47320 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00306 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00032 * 179.72628 * 7 6 5 10 10 C 1.46504 * 120.00168 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47047 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99760 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99804 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00270 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99961 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47145 * 89.99797 * 15 13 11 17 17 H 1.48495 * 109.47144 * 209.99882 * 15 13 11 18 18 H 1.48504 * 109.46876 * 330.00099 * 15 13 11 19 19 C 1.38857 * 119.88483 * 0.24857 * 4 3 2 20 20 Cl 1.73594 * 120.04031 * 179.75151 * 19 4 3 21 21 C 1.38214 * 119.91954 * 359.49605 * 19 4 3 22 22 C 1.38232 * 119.95959 * 179.97438 * 2 1 3 23 23 N 1.48001 * 119.94709 * 0.02562 * 22 2 1 24 24 O 1.21800 * 120.00278 * 216.86423 * 23 22 2 25 25 O 1.21801 * 119.99640 * 36.86282 * 23 22 2 26 26 H 1.08999 * 109.46919 * 95.71337 * 1 2 3 27 27 H 1.09006 * 109.47301 * 215.70499 * 1 2 3 28 28 H 1.08996 * 109.47694 * 335.71424 * 1 2 3 29 29 H 1.07995 * 120.02014 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47275 * 59.99759 * 6 5 4 31 31 H 1.09000 * 109.46787 * 299.99863 * 6 5 4 32 32 H 0.97003 * 119.99714 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.46838 * 299.99461 * 10 9 7 34 34 H 1.08998 * 109.46884 * 59.99649 * 10 9 7 35 35 H 0.96999 * 120.00133 * 179.97438 * 14 13 11 36 36 H 1.07993 * 119.98460 * 180.27986 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1973 0.0000 4 6 3.5838 1.1971 0.0005 5 8 4.2647 2.3735 0.0000 6 6 3.4878 3.5729 -0.0017 7 6 4.4071 4.7670 -0.0027 8 8 5.6092 4.6068 -0.0015 9 7 3.8933 6.0130 -0.0099 10 6 4.7870 7.1738 -0.0102 11 6 3.9677 8.4386 -0.0196 12 1 2.8891 8.3831 -0.0243 13 6 4.5950 9.6663 -0.0210 14 7 5.9083 9.7338 -0.0148 15 14 3.5794 11.2341 -0.0318 16 1 3.3033 11.6547 1.3653 17 1 4.3313 12.3062 -0.7321 18 1 2.2960 10.9876 -0.7373 19 6 4.2755 -0.0069 -0.0041 20 17 6.0115 -0.0117 -0.0100 21 6 3.5803 -1.2014 0.0012 22 6 2.1973 -1.1976 0.0005 23 7 1.4552 -2.4781 0.0005 24 8 1.8797 -3.4281 0.6337 25 8 0.4199 -2.5820 -0.6327 26 1 -0.3633 -0.1023 -1.0226 27 1 -0.3634 -0.8345 0.5998 28 1 -0.3634 0.9367 0.4226 29 1 1.6569 2.1324 -0.0004 30 1 2.8582 3.5993 0.8878 31 1 2.8597 3.5977 -0.8922 32 1 2.9318 6.1411 -0.0148 33 1 5.4116 7.1517 0.8828 34 1 5.4199 7.1448 -0.8972 35 1 6.3496 10.5976 -0.0162 36 1 4.1173 -2.1384 0.0021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795257848.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:48 Heat of formation + Delta-G solvation = -59.742331 kcal Electronic energy + Delta-G solvation = -24287.956491 eV Core-core repulsion = 20188.006537 eV Total energy + Delta-G solvation = -4099.949954 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.57209 -41.01696 -39.22680 -37.95553 -37.03722 -36.80955 -34.42789 -33.36979 -32.54406 -31.76190 -29.48298 -28.18912 -27.07575 -25.79103 -23.53313 -22.59946 -22.34892 -20.16555 -19.53231 -19.04811 -18.60987 -18.17743 -17.50914 -16.76959 -16.55215 -15.80272 -15.52031 -15.30404 -14.87578 -14.83113 -14.51562 -14.10023 -14.00166 -13.66232 -13.35264 -13.00480 -12.74483 -12.17980 -12.15356 -12.04705 -11.87753 -11.79301 -11.55056 -11.49872 -11.32968 -11.23863 -11.10751 -10.98983 -10.44267 -9.72823 -9.55493 -9.39050 -9.07487 -8.89490 -8.14560 -6.29109 -4.37477 -0.39368 0.19822 0.77130 0.97493 1.65964 2.23553 2.55063 2.94836 3.15803 3.22344 3.24316 3.67391 3.78815 3.85115 4.00437 4.23427 4.32491 4.56257 4.66918 4.76932 4.80360 4.82524 4.92874 5.00653 5.07458 5.11720 5.31933 5.42039 5.51346 6.03494 6.48496 7.09152 7.14371 7.32129 7.33214 7.48023 7.80957 8.32709 8.57105 8.79960 9.29345 10.80892 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.002335 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.074824 B =11991.003489 C =13245.958899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.027 3.973 3 C -0.205 4.205 4 C 0.200 3.800 5 O -0.259 6.259 6 C 0.030 3.970 7 C 0.500 3.500 8 O -0.526 6.526 9 N -0.704 5.704 10 C 0.251 3.749 11 C -0.548 4.548 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.883 5.883 15 Si 0.906 3.094 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.078 4.078 20 Cl -0.018 7.018 21 C -0.009 4.009 22 C -0.079 4.079 23 N 0.033 4.967 24 O -0.159 6.159 25 O -0.150 6.150 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.163 0.837 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.393 0.607 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.268 0.732 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 -20.171 -0.096 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.025 3.975 3 C -0.225 4.225 4 C 0.150 3.850 5 O -0.168 6.168 6 C -0.048 4.048 7 C 0.282 3.718 8 O -0.403 6.403 9 N -0.354 5.354 10 C 0.131 3.869 11 C -0.586 4.586 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.520 5.520 15 Si 0.733 3.267 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.107 4.107 20 Cl 0.012 6.988 21 C -0.028 4.028 22 C -0.162 4.162 23 N 0.555 4.445 24 O -0.375 6.375 25 O -0.368 6.368 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.180 0.820 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.225 0.775 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.875 -19.431 -0.090 21.362 hybrid contribution -1.100 0.705 0.018 1.307 sum -9.975 -18.726 -0.072 21.217 Atomic orbital electron populations 1.21116 0.88093 1.04299 1.04999 1.19572 0.97951 0.89586 0.90382 1.21170 0.91925 0.99127 1.10229 1.19049 0.90289 0.86288 0.89348 1.86364 1.34010 1.11105 1.85308 1.22955 0.94779 0.82997 1.04112 1.19686 0.88866 0.83967 0.79291 1.90756 1.14870 1.85564 1.49083 1.46368 1.11245 1.05523 1.72312 1.19206 0.89386 0.80141 0.98137 1.21168 0.93189 0.90310 1.53925 0.91774 1.24954 0.95060 0.99420 0.94514 1.69962 1.07844 1.25855 1.48346 0.86386 0.79884 0.82180 0.78298 1.20384 1.20915 1.19713 1.19812 0.87883 0.90812 1.12147 1.98443 1.04904 1.98692 1.96802 1.20504 0.90776 0.98632 0.92924 1.20479 0.91658 0.83661 1.20422 1.43361 1.00519 1.02192 0.98445 1.94572 1.71543 1.30145 1.41246 1.94537 1.11978 1.89437 1.40867 0.88123 0.90349 0.89766 0.81992 0.88442 0.88416 0.77465 0.95184 0.95165 0.92262 0.81906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 8.63 36.00 0.31 -0.47 16 2 C 0.03 0.22 5.87 -104.64 -0.61 -0.40 16 3 C -0.21 -1.60 8.67 -39.44 -0.34 -1.94 16 4 C 0.20 2.10 6.68 -39.19 -0.26 1.84 16 5 O -0.26 -3.39 9.13 -39.41 -0.36 -3.75 16 6 C 0.03 0.34 5.22 36.00 0.19 0.52 16 7 C 0.50 8.80 7.91 -10.99 -0.09 8.72 16 8 O -0.53 -12.00 16.50 -14.35 -0.24 -12.24 16 9 N -0.70 -12.97 5.55 -61.47 -0.34 -13.31 16 10 C 0.25 6.19 5.43 -5.19 -0.03 6.16 16 11 C -0.55 -13.91 9.28 -34.44 -0.32 -14.23 16 12 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.88 -25.00 13.29 55.43 0.74 -24.27 16 15 Si 0.91 19.86 29.54 -169.99 -5.02 14.84 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 C -0.08 -0.82 6.33 -39.36 -0.25 -1.07 16 20 Cl -0.02 -0.20 28.51 -51.86 -1.48 -1.68 16 21 C -0.01 -0.08 9.44 -39.57 -0.37 -0.45 16 22 C -0.08 -0.76 6.49 -79.93 -0.52 -1.28 16 23 N 0.03 0.37 4.14 33.97 0.14 0.51 16 24 O -0.16 -1.90 18.93 -29.46 -0.56 -2.46 16 25 O -0.15 -1.68 16.74 -29.46 -0.49 -2.17 16 26 H 0.10 0.55 8.13 -51.93 -0.42 0.12 16 27 H 0.08 0.54 6.90 -51.93 -0.36 0.18 16 28 H 0.08 0.34 8.05 -51.93 -0.42 -0.08 16 29 H 0.16 0.80 6.30 -52.49 -0.33 0.47 16 30 H 0.10 0.77 7.66 -51.93 -0.40 0.37 16 31 H 0.10 0.77 7.66 -51.93 -0.40 0.38 16 32 H 0.39 5.77 8.32 -40.82 -0.34 5.43 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.16 1.27 8.00 -52.49 -0.42 0.85 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -32.48 342.24 -8.31 -40.79 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -3.46 Total: -0.43 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.39 Total: -0.98 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.54 Total: -37.07 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.65 Total: -20.62 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.48 Total: -1.68 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.48 -8.31 -40.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795257848.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.954 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds