Wall clock time and date at job start Tue Mar 31 2020 15:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38195 * 119.96164 * 2 1 4 4 C 1.38664 * 119.95626 * 179.97438 * 3 2 1 5 5 O 1.35924 * 120.05691 * 179.97438 * 4 3 2 6 6 C 1.42903 * 117.00387 * 359.97438 * 5 4 3 7 7 C 1.50694 * 109.47320 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00306 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00032 * 179.72628 * 7 6 5 10 10 C 1.46504 * 120.00168 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47047 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99760 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99804 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00270 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99961 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47145 * 89.99797 * 15 13 11 17 17 H 1.48495 * 109.47144 * 209.99882 * 15 13 11 18 18 H 1.48504 * 109.46876 * 330.00099 * 15 13 11 19 19 C 1.38857 * 119.88483 * 0.24857 * 4 3 2 20 20 Cl 1.73594 * 120.04031 * 179.75151 * 19 4 3 21 21 C 1.38214 * 119.91954 * 359.49605 * 19 4 3 22 22 C 1.38232 * 119.95959 * 179.97438 * 2 1 3 23 23 N 1.48001 * 119.94709 * 0.02562 * 22 2 1 24 24 O 1.21800 * 120.00278 * 216.86423 * 23 22 2 25 25 O 1.21801 * 119.99640 * 36.86282 * 23 22 2 26 26 H 1.08999 * 109.46919 * 95.71337 * 1 2 3 27 27 H 1.09006 * 109.47301 * 215.70499 * 1 2 3 28 28 H 1.08996 * 109.47694 * 335.71424 * 1 2 3 29 29 H 1.07995 * 120.02014 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47275 * 59.99759 * 6 5 4 31 31 H 1.09000 * 109.46787 * 299.99863 * 6 5 4 32 32 H 0.97003 * 119.99714 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.46838 * 299.99461 * 10 9 7 34 34 H 1.08998 * 109.46884 * 59.99649 * 10 9 7 35 35 H 0.96999 * 120.00133 * 179.97438 * 14 13 11 36 36 H 1.07993 * 119.98460 * 180.27986 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1973 0.0000 4 6 3.5838 1.1971 0.0005 5 8 4.2647 2.3735 0.0000 6 6 3.4878 3.5729 -0.0017 7 6 4.4071 4.7670 -0.0027 8 8 5.6092 4.6068 -0.0015 9 7 3.8933 6.0130 -0.0099 10 6 4.7870 7.1738 -0.0102 11 6 3.9677 8.4386 -0.0196 12 1 2.8891 8.3831 -0.0243 13 6 4.5950 9.6663 -0.0210 14 7 5.9083 9.7338 -0.0148 15 14 3.5794 11.2341 -0.0318 16 1 3.3033 11.6547 1.3653 17 1 4.3313 12.3062 -0.7321 18 1 2.2960 10.9876 -0.7373 19 6 4.2755 -0.0069 -0.0041 20 17 6.0115 -0.0117 -0.0100 21 6 3.5803 -1.2014 0.0012 22 6 2.1973 -1.1976 0.0005 23 7 1.4552 -2.4781 0.0005 24 8 1.8797 -3.4281 0.6337 25 8 0.4199 -2.5820 -0.6327 26 1 -0.3633 -0.1023 -1.0226 27 1 -0.3634 -0.8345 0.5998 28 1 -0.3634 0.9367 0.4226 29 1 1.6569 2.1324 -0.0004 30 1 2.8582 3.5993 0.8878 31 1 2.8597 3.5977 -0.8922 32 1 2.9318 6.1411 -0.0148 33 1 5.4116 7.1517 0.8828 34 1 5.4199 7.1448 -0.8972 35 1 6.3496 10.5976 -0.0162 36 1 4.1173 -2.1384 0.0021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795257848.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:47 Heat of formation + Delta-G solvation = -80.433482 kcal Electronic energy + Delta-G solvation = -24288.853726 eV Core-core repulsion = 20188.006537 eV Total energy + Delta-G solvation = -4100.847189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.38215 -41.85540 -40.49896 -38.96133 -37.85785 -37.65682 -36.19866 -34.42350 -34.01199 -32.53921 -30.73916 -28.84191 -28.62152 -26.67876 -24.80996 -23.85875 -23.14134 -21.63761 -20.32231 -19.91331 -19.42004 -19.27136 -18.72323 -17.79707 -17.66335 -17.12439 -16.97431 -16.33335 -16.01776 -15.96391 -15.63038 -14.99246 -14.86152 -14.59652 -14.25616 -14.18002 -13.96774 -13.82988 -13.36867 -12.95116 -12.78709 -12.74123 -12.71171 -12.63844 -12.41834 -12.31565 -12.22529 -12.16417 -12.06917 -11.49469 -10.90741 -10.81574 -10.38150 -9.93480 -9.84504 -8.29436 -6.46005 -1.19254 -0.47246 -0.03021 0.19459 0.86144 1.31839 1.45922 1.46701 1.58028 1.58588 1.85683 2.35159 2.62187 3.06493 3.12972 3.17285 3.30378 3.60261 3.68144 3.95037 4.01464 4.04537 4.16839 4.21062 4.32311 4.60768 4.75354 4.86440 5.02973 5.09147 5.22183 5.26374 5.42765 5.60559 5.76744 5.82851 6.43995 6.64267 6.79889 7.22492 7.39986 8.82593 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.002335 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.074824 B =11991.003489 C =13245.958899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.033 3.967 3 C -0.187 4.187 4 C 0.192 3.808 5 O -0.292 6.292 6 C 0.041 3.959 7 C 0.495 3.505 8 O -0.588 6.588 9 N -0.696 5.696 10 C 0.266 3.734 11 C -0.553 4.553 12 H 0.090 0.910 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.983 3.017 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.252 1.252 19 C -0.091 4.091 20 Cl -0.038 7.038 21 C -0.006 4.006 22 C -0.089 4.089 23 N 0.035 4.965 24 O -0.192 6.192 25 O -0.141 6.141 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.202 0.798 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.415 0.585 33 H -0.011 1.011 34 H -0.011 1.011 35 H 0.268 0.732 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.706 -19.658 -0.264 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.032 3.968 3 C -0.206 4.206 4 C 0.142 3.858 5 O -0.202 6.202 6 C -0.036 4.036 7 C 0.280 3.720 8 O -0.469 6.469 9 N -0.348 5.348 10 C 0.143 3.857 11 C -0.591 4.591 12 H 0.108 0.892 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.175 1.175 19 C -0.120 4.120 20 Cl -0.009 7.009 21 C -0.026 4.026 22 C -0.172 4.172 23 N 0.554 4.446 24 O -0.401 6.401 25 O -0.364 6.364 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.219 0.781 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.252 0.748 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.077 0.923 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.928 -18.994 -0.222 22.977 hybrid contribution 0.120 0.476 0.038 0.492 sum -12.808 -18.519 -0.183 22.517 Atomic orbital electron populations 1.21239 0.86234 1.05520 1.05621 1.19902 0.99196 0.88848 0.88882 1.21503 0.90491 1.00428 1.08203 1.19169 0.91349 0.85077 0.90161 1.86307 1.35654 1.12149 1.86112 1.22955 0.92687 0.79516 1.08413 1.20816 0.89041 0.85260 0.76843 1.90734 1.18184 1.86581 1.51392 1.45974 1.11624 1.04663 1.72529 1.18588 0.89722 0.82980 0.94364 1.21617 0.94431 0.90327 1.52713 0.89179 1.26060 0.96091 1.03578 0.93974 1.70134 1.10169 1.26746 1.50020 0.85173 0.78584 0.77044 0.78528 1.19741 1.21431 1.17549 1.19907 0.86959 0.91569 1.13518 1.98434 1.06756 1.98748 1.97001 1.20524 0.90919 0.98636 0.92509 1.20651 0.91729 0.83518 1.21329 1.43544 1.00451 1.02536 0.98057 1.94580 1.72056 1.31043 1.42433 1.94513 1.12089 1.89521 1.40242 0.87150 0.91402 0.86798 0.78108 0.83910 0.83877 0.74780 0.99302 0.99283 0.92321 0.81295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 8.63 71.23 0.61 -0.39 16 2 C 0.03 0.41 5.87 -19.88 -0.12 0.30 16 3 C -0.19 -2.04 8.67 22.36 0.19 -1.85 16 4 C 0.19 3.51 6.68 22.52 0.15 3.66 16 5 O -0.29 -7.03 9.13 -73.66 -0.67 -7.70 16 6 C 0.04 0.76 5.22 71.23 0.37 1.13 16 7 C 0.49 16.95 7.91 87.65 0.69 17.64 16 8 O -0.59 -27.75 16.50 16.00 0.26 -27.49 16 9 N -0.70 -24.89 5.55 -466.79 -2.59 -27.48 16 10 C 0.27 13.50 5.43 85.63 0.46 13.97 16 11 C -0.55 -27.80 9.28 25.60 0.24 -27.56 16 12 H 0.09 3.95 7.60 -2.91 -0.02 3.93 16 13 C 0.00 0.14 5.46 84.66 0.46 0.60 16 14 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 15 Si 0.98 40.00 29.54 68.60 2.03 42.02 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 19 C -0.09 -1.83 6.33 22.41 0.14 -1.69 16 20 Cl -0.04 -0.91 28.51 -2.72 -0.08 -0.99 16 21 C -0.01 -0.11 9.44 22.28 0.21 0.10 16 22 C -0.09 -1.54 6.49 36.39 0.24 -1.31 16 23 N 0.04 0.73 4.14 -46.44 -0.19 0.54 16 24 O -0.19 -4.57 18.93 18.89 0.36 -4.22 16 25 O -0.14 -2.91 16.74 18.89 0.32 -2.59 16 26 H 0.11 0.71 8.13 -2.39 -0.02 0.69 16 27 H 0.07 0.72 6.90 -2.38 -0.02 0.70 16 28 H 0.11 0.24 8.05 -2.39 -0.02 0.22 16 29 H 0.20 0.54 6.30 -2.91 -0.02 0.52 16 30 H 0.14 1.40 7.66 -2.39 -0.02 1.38 16 31 H 0.14 1.40 7.66 -2.39 -0.02 1.38 16 32 H 0.42 10.87 8.32 -92.71 -0.77 10.10 16 33 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.17 2.64 8.00 -2.91 -0.02 2.61 16 Total: -1.00 -76.79 342.24 3.76 -73.03 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 0.38 Total: 4.31 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 3.66 Total: 4.61 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.50 Total: -80.98 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: 0.27 Total: -41.99 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -76.79 3.76 -73.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795257848.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.407 kcal (2) G-P(sol) polarization free energy of solvation -76.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds