Wall clock time and date at job start Tue Mar 31 2020 15:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 119.99884 * 2 1 4 4 H 1.48505 * 109.47382 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47139 * 299.99249 * 3 2 1 6 6 H 1.48505 * 109.47526 * 59.99171 * 3 2 1 7 7 C 1.37881 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46411 * 180.02562 * 10 9 7 12 12 S 1.81410 * 109.46691 * 180.02562 * 11 10 9 13 13 O 1.42099 * 108.57934 * 61.13692 * 12 11 10 14 14 O 1.42100 * 108.57336 * 290.11397 * 12 11 10 15 15 C 1.81394 * 101.92107 * 175.62881 * 12 11 10 16 16 H 1.09001 * 110.26722 * 295.97512 * 15 12 11 17 17 C 1.54348 * 110.30534 * 58.04708 * 15 12 11 18 18 C 1.54349 * 102.38994 * 145.27591 * 17 15 12 19 19 C 1.51370 * 105.17155 * 333.64750 * 18 17 15 20 20 C 1.38480 * 130.37698 * 197.18691 * 19 18 17 21 21 C 1.38221 * 120.20289 * 180.02562 * 20 19 18 22 22 Cl 1.73600 * 120.04496 * 179.97438 * 21 20 19 23 23 C 1.38372 * 119.90713 * 0.25531 * 21 20 19 24 24 C 1.38079 * 119.91953 * 359.46668 * 23 21 20 25 25 C 1.38227 * 109.76069 * 17.19371 * 19 18 17 26 26 H 0.97001 * 120.00722 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47101 * 59.99644 * 9 7 2 28 28 H 1.09000 * 109.46584 * 299.99914 * 9 7 2 29 29 H 1.08996 * 109.46643 * 60.00540 * 10 9 7 30 30 H 1.08998 * 109.47175 * 299.99741 * 10 9 7 31 31 H 1.08993 * 109.47684 * 60.00482 * 11 10 9 32 32 H 1.08998 * 109.47159 * 299.99652 * 11 10 9 33 33 H 1.08995 * 110.81849 * 27.05492 * 17 15 12 34 34 H 1.09000 * 110.82332 * 263.50016 * 17 15 12 35 35 H 1.08999 * 110.29922 * 214.72555 * 18 17 15 36 36 H 1.09000 * 110.38293 * 92.62024 * 18 17 15 37 37 H 1.07996 * 119.89663 * 0.02562 * 20 19 18 38 38 H 1.07998 * 120.03688 * 179.72750 * 23 21 20 39 39 H 1.07999 * 119.88119 * 180.27875 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 16 2.6593 -6.3659 0.0007 13 8 3.4468 -6.2876 1.1808 14 8 3.3064 -6.4088 -1.2637 15 6 1.5576 -7.8007 0.1350 16 1 1.0260 -7.7808 1.0864 17 6 0.5550 -7.8179 -1.0384 18 6 0.3867 -9.3283 -1.3080 19 6 1.6754 -9.9622 -0.8297 20 6 2.2161 -11.2083 -1.0988 21 6 3.4257 -11.5767 -0.5406 22 17 4.0995 -13.1402 -0.8802 23 6 4.0960 -10.6998 0.2939 24 6 3.5603 -9.4549 0.5581 25 6 2.3482 -9.0845 -0.0005 26 1 -0.4851 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 0.8541 -5.0446 -0.8903 32 1 0.8535 -5.0450 0.8897 33 1 0.9704 -7.3127 -1.9103 34 1 -0.3936 -7.3688 -0.7441 35 1 0.2492 -9.5092 -2.3740 36 1 -0.4601 -9.7223 -0.7458 37 1 1.6910 -11.8944 -1.7468 38 1 5.0392 -10.9872 0.7347 39 1 4.0862 -8.7693 1.2059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795416151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:38 Heat of formation + Delta-G solvation = -69.950573 kcal Electronic energy + Delta-G solvation = -22851.180376 eV Core-core repulsion = 19297.080975 eV Total energy + Delta-G solvation = -3554.099402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58765 -37.30147 -36.87507 -35.92500 -35.69886 -34.69218 -32.23240 -32.01471 -29.49511 -28.21008 -27.65204 -23.79228 -23.27626 -21.85926 -21.51743 -20.48336 -18.75187 -17.27519 -17.18897 -16.56312 -16.13895 -15.84723 -15.70731 -15.48977 -14.69891 -14.47708 -14.34811 -13.92011 -13.78125 -13.65679 -12.79578 -12.66945 -12.54311 -12.31090 -12.14733 -12.01381 -11.98949 -11.87269 -11.80901 -11.71434 -11.33009 -11.26604 -11.09624 -10.94686 -10.84548 -10.67449 -10.35893 -9.96541 -9.42139 -9.28686 -9.15148 -8.82463 -8.42692 -6.07588 -4.10343 -0.04826 0.74415 0.86860 1.72186 2.78717 3.14497 3.28549 3.36205 3.41229 3.49691 3.71986 3.98910 4.15238 4.41250 4.43853 4.53131 4.62098 4.69235 4.87282 4.98570 5.09242 5.11479 5.17480 5.20879 5.29134 5.38001 5.47028 5.60594 5.64128 5.76504 5.81867 5.84288 6.08656 6.26396 6.33745 6.43285 6.85065 7.54777 7.64385 7.90661 8.31195 8.96081 9.54519 11.03670 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.034858 B = 0.002387 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.060940 B =11729.268520 C =12208.053174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.105 4.105 11 C -0.589 4.589 12 S 2.403 3.597 13 O -0.938 6.938 14 O -0.931 6.931 15 C -0.543 4.543 16 H 0.154 0.846 17 C -0.107 4.107 18 C -0.075 4.075 19 C -0.066 4.066 20 C -0.100 4.100 21 C -0.027 4.027 22 Cl -0.067 7.067 23 C -0.104 4.104 24 C -0.099 4.099 25 C -0.080 4.080 26 H 0.261 0.739 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 -25.277 -1.026 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.144 4.144 11 C -0.721 4.721 12 S 2.587 3.413 13 O -0.935 6.935 14 O -0.929 6.929 15 C -0.648 4.648 16 H 0.171 0.829 17 C -0.145 4.145 18 C -0.112 4.112 19 C -0.067 4.067 20 C -0.118 4.118 21 C -0.054 4.054 22 Cl -0.038 7.038 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.081 4.081 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.397 -25.327 -1.100 25.390 hybrid contribution -0.417 0.668 0.192 0.811 sum 0.980 -24.659 -0.908 24.695 Atomic orbital electron populations 1.69959 1.06080 1.26692 1.50736 1.25019 0.94897 0.99390 0.95108 0.86500 0.80220 0.83487 0.77624 1.19584 1.20930 1.20940 1.21290 0.93326 0.90829 1.50872 0.92290 1.19089 0.93546 0.90445 0.97763 1.21535 0.99387 0.91201 1.02289 1.30290 1.15567 1.14841 1.11363 1.08791 0.78741 0.78077 0.75679 1.93555 1.65476 1.85460 1.48995 1.93569 1.71494 1.85564 1.42234 1.29877 1.12101 1.14116 1.08708 0.82862 1.22281 0.98788 0.97944 0.95474 1.21024 0.94237 0.93583 1.02379 1.20492 0.96711 0.93062 0.96441 1.20455 0.94440 0.96122 1.00825 1.20797 0.95690 0.88175 1.00765 1.98376 1.84983 1.26132 1.94285 1.20931 1.00580 0.92690 0.98089 1.20912 0.94578 0.96781 0.99513 1.19746 0.95010 0.94475 0.98844 0.92945 0.96055 0.96059 0.91289 0.91526 0.85083 0.85213 0.88891 0.87998 0.89378 0.89092 0.84608 0.84045 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 10 C -0.11 -2.09 5.16 -26.73 -0.14 -2.23 16 11 C -0.59 -8.45 5.42 37.16 0.20 -8.25 16 12 S 2.40 33.87 4.02 -107.50 -0.43 33.43 16 13 O -0.94 -15.74 17.43 -57.83 -1.01 -16.75 16 14 O -0.93 -15.97 17.69 -57.83 -1.02 -17.00 16 15 C -0.54 -5.46 3.33 -26.84 -0.09 -5.55 16 16 H 0.15 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.11 -0.87 5.89 -25.32 -0.15 -1.02 16 18 C -0.07 -0.55 6.77 -26.85 -0.18 -0.74 16 19 C -0.07 -0.65 6.14 -104.21 -0.64 -1.29 16 20 C -0.10 -0.93 9.82 -39.50 -0.39 -1.32 16 21 C -0.03 -0.27 6.32 -39.54 -0.25 -0.52 16 22 Cl -0.07 -0.58 28.96 -51.86 -1.50 -2.09 16 23 C -0.10 -1.05 9.83 -39.59 -0.39 -1.44 16 24 C -0.10 -1.14 9.74 -39.54 -0.39 -1.52 16 25 C -0.08 -0.90 5.60 -104.19 -0.58 -1.48 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.13 1.59 7.85 -51.93 -0.41 1.18 16 32 H 0.13 1.54 8.14 -51.92 -0.42 1.12 16 33 H 0.09 0.79 7.57 -51.93 -0.39 0.40 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.14 1.61 7.39 -52.49 -0.39 1.22 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -34.78 354.07 -11.84 -46.62 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.38 Total: -2.25 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: -3.54 Total: -38.19 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -2.03 Total: -33.75 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 33.87 SS G_CDS: -0.43 Total: 33.43 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.78 -11.84 -46.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795416151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.336 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds