Wall clock time and date at job start Tue Mar 31 2020 15:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99817 * 2 1 4 4 H 1.48502 * 109.47403 * 270.00815 * 3 2 1 5 5 H 1.48506 * 109.47245 * 30.00814 * 3 2 1 6 6 H 1.48500 * 109.47218 * 150.00291 * 3 2 1 7 7 C 1.37874 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99720 * 175.48609 * 7 2 1 9 9 C 1.50702 * 120.00348 * 355.76720 * 7 2 1 10 10 C 1.52998 * 115.54633 * 272.44748 * 9 7 2 11 11 N 1.46498 * 109.47432 * 294.07920 * 10 9 7 12 12 C 1.34774 * 120.00005 * 184.40014 * 11 10 9 13 13 S 1.71194 * 120.00187 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99857 * 179.97438 * 12 11 10 15 15 C 1.40002 * 119.99909 * 185.30138 * 14 12 11 16 16 C 1.38877 * 120.04244 * 41.56623 * 15 14 12 17 17 C 1.38114 * 119.97416 * 179.97438 * 16 15 14 18 18 C 1.38459 * 120.06123 * 359.97249 * 17 16 15 19 19 F 1.35098 * 119.96101 * 179.97438 * 18 17 16 20 20 C 1.38561 * 120.08024 * 0.02944 * 18 17 16 21 21 Cl 1.73605 * 119.98793 * 179.97438 * 20 18 17 22 22 C 1.38236 * 120.02456 * 359.73809 * 20 18 17 23 23 C 1.52994 * 117.50144 * 126.77912 * 9 7 2 24 24 C 1.52999 * 117.49789 * 58.11357 * 9 7 2 25 25 H 0.96996 * 119.99919 * 4.99350 * 1 2 3 26 26 H 1.09004 * 109.46929 * 54.07634 * 10 9 7 27 27 H 1.08998 * 109.47163 * 174.07319 * 10 9 7 28 28 H 0.97004 * 119.99710 * 4.39485 * 11 10 9 29 29 H 0.97003 * 119.99732 * 5.29772 * 14 12 11 30 30 H 1.07997 * 120.01142 * 0.02562 * 16 15 14 31 31 H 1.07998 * 119.97116 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.03305 * 180.25563 * 22 20 18 33 33 H 1.08996 * 117.49933 * 359.97438 * 23 9 7 34 34 H 1.09002 * 117.50054 * 145.02416 * 23 9 7 35 35 H 1.09006 * 117.49808 * 214.98215 * 24 9 7 36 36 H 1.09001 * 117.50127 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0821 -1.1954 -0.0741 9 6 1.2542 -2.4974 0.0952 10 6 0.9629 -2.9883 1.5147 11 7 2.2226 -3.3200 2.1850 12 6 2.2072 -3.8594 3.4200 13 16 0.7155 -4.1565 4.2057 14 7 3.3661 -4.1650 4.0364 15 6 3.3495 -4.8263 5.2703 16 6 2.4570 -5.8675 5.4892 17 6 2.4422 -6.5192 6.7068 18 6 3.3168 -6.1358 7.7093 19 9 3.3003 -6.7744 8.8998 20 6 4.2083 -5.0973 7.4935 21 17 5.3035 -4.6182 8.7525 22 6 4.2294 -4.4458 6.2745 23 6 1.5357 -3.5549 -0.9741 24 6 0.2088 -2.7916 -0.9825 25 1 -0.4850 0.8368 -0.0731 26 1 0.4502 -2.2044 2.0722 27 1 0.3307 -3.8751 1.4699 28 1 3.0678 -3.1513 1.7399 29 1 4.2117 -3.9268 3.6250 30 1 1.7753 -6.1679 4.7073 31 1 1.7483 -7.3291 6.8768 32 1 4.9270 -3.6390 6.1048 33 1 2.2633 -3.3077 -1.7471 34 1 1.5128 -4.6003 -0.6664 35 1 -0.6864 -3.3352 -0.6803 36 1 0.0634 -2.0421 -1.7606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797408956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:51 Heat of formation + Delta-G solvation = 19.637088 kcal Electronic energy + Delta-G solvation = -22202.202454 eV Core-core repulsion = 18560.820311 eV Total energy + Delta-G solvation = -3641.382143 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.051 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.07268 -40.22586 -38.35141 -37.04235 -36.43016 -34.29414 -32.14099 -31.25875 -29.47987 -26.71031 -25.44784 -24.16853 -23.08965 -22.36600 -21.26946 -19.77351 -18.65048 -18.17403 -17.72204 -16.63752 -16.33010 -15.88241 -15.76418 -15.01561 -14.94254 -14.56281 -14.38070 -14.12149 -13.78573 -13.60341 -13.21144 -13.14305 -12.92586 -12.27961 -11.81588 -11.63819 -11.50345 -11.19619 -11.16958 -11.10220 -10.93589 -10.68406 -10.40189 -9.75255 -9.72536 -9.21836 -9.13288 -8.65393 -8.45777 -8.35039 -7.58201 -6.95360 -6.24652 -4.37678 0.65161 0.88026 1.61508 1.76753 2.13754 2.68963 3.13694 3.22220 3.23520 3.28617 3.69654 3.92032 4.19954 4.45951 4.84855 4.89605 5.00576 5.08517 5.11481 5.35530 5.63354 5.69570 5.91825 5.98808 6.04933 6.11652 6.22373 6.29231 6.37654 6.52541 6.56300 6.79805 6.95673 7.09919 7.14238 7.37382 7.53611 7.63097 8.10712 8.63815 9.31685 10.81535 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002898 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.102706 B = 9658.834363 C =10567.298965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.015 3.985 10 C 0.160 3.840 11 N -0.631 5.631 12 C 0.550 3.450 13 S -0.640 6.640 14 N -0.647 5.647 15 C 0.151 3.849 16 C -0.039 4.039 17 C -0.134 4.134 18 C 0.106 3.894 19 F -0.129 7.129 20 C -0.069 4.069 21 Cl -0.053 7.053 22 C -0.096 4.096 23 C -0.213 4.213 24 C -0.131 4.131 25 H 0.265 0.735 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.403 0.597 29 H 0.408 0.592 30 H 0.162 0.838 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.642 -10.974 9.546 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.077 0.923 9 C 0.014 3.986 10 C 0.038 3.962 11 N -0.252 5.252 12 C 0.189 3.811 13 S -0.510 6.510 14 N -0.275 5.275 15 C 0.056 3.944 16 C -0.062 4.062 17 C -0.155 4.155 18 C 0.085 3.915 19 F -0.108 7.108 20 C -0.098 4.098 21 Cl -0.024 7.024 22 C -0.119 4.119 23 C -0.250 4.250 24 C -0.169 4.169 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.240 0.760 29 H 0.247 0.753 30 H 0.179 0.821 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.355 -10.912 10.106 17.059 hybrid contribution 2.028 1.506 -0.541 2.583 sum 10.383 -9.406 9.565 16.964 Atomic orbital electron populations 1.69972 1.05859 1.27259 1.47151 1.24988 0.94854 0.99064 0.93949 0.86617 0.79843 0.83476 0.78242 1.20535 1.20952 1.19917 1.20300 0.92483 0.88535 1.53619 0.92332 1.19081 1.00468 0.93714 0.85299 1.21700 0.80857 0.99912 0.93686 1.45484 1.13655 1.54371 1.11686 1.22334 0.91489 0.82069 0.85195 1.93336 1.15139 1.74691 1.67796 1.42067 1.06947 1.58461 1.20051 1.17134 0.98993 0.93412 0.84899 1.21457 0.95410 0.90910 0.98416 1.20937 0.99776 1.02472 0.92354 1.17422 0.97829 0.93474 0.82727 1.91524 1.95650 1.80216 1.43399 1.20459 0.97629 0.99707 0.92046 1.98381 1.61847 1.91193 1.51024 1.20579 1.01489 1.00022 0.89765 1.23078 1.01549 0.95396 1.04994 1.22458 0.90571 1.00891 1.02956 0.92547 0.89105 0.91349 0.76026 0.75342 0.82111 0.83342 0.83866 0.90237 0.91645 0.91413 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.65 12.47 55.43 0.69 -21.95 16 2 C 0.08 1.91 5.42 -17.82 -0.10 1.81 16 3 Si 0.89 19.46 29.54 -169.99 -5.02 14.44 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.51 -12.05 8.65 -34.44 -0.30 -12.35 16 8 H 0.06 1.35 7.82 -52.48 -0.41 0.94 16 9 C 0.02 0.32 1.50 -155.66 -0.23 0.09 16 10 C 0.16 3.14 4.98 -4.04 -0.02 3.12 16 11 N -0.63 -9.99 5.49 -62.03 -0.34 -10.33 16 12 C 0.55 8.41 7.75 -86.92 -0.67 7.73 16 13 S -0.64 -12.13 25.00 -107.50 -2.69 -14.81 16 14 N -0.65 -7.36 5.33 -11.39 -0.06 -7.43 16 15 C 0.15 1.74 5.92 -83.67 -0.50 1.25 16 16 C -0.04 -0.46 7.85 -39.39 -0.31 -0.77 16 17 C -0.13 -1.44 10.02 -39.55 -0.40 -1.84 16 18 C 0.11 1.21 7.27 -39.38 -0.29 0.93 16 19 F -0.13 -1.53 16.83 2.25 0.04 -1.49 16 20 C -0.07 -0.77 6.32 -39.46 -0.25 -1.02 16 21 Cl -0.05 -0.56 28.61 -51.86 -1.48 -2.05 16 22 C -0.10 -1.01 9.75 -39.36 -0.38 -1.39 16 23 C -0.21 -3.97 9.96 -26.69 -0.27 -4.24 16 24 C -0.13 -2.74 9.02 -26.69 -0.24 -2.98 16 25 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 26 H 0.09 2.10 8.12 -51.93 -0.42 1.68 16 27 H 0.07 1.34 7.76 -51.93 -0.40 0.94 16 28 H 0.40 5.62 8.38 -40.82 -0.34 5.28 16 29 H 0.41 3.33 8.84 -40.82 -0.36 2.97 16 30 H 0.16 2.11 6.22 -48.80 -0.30 1.81 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.09 2.08 8.06 -51.93 -0.42 1.66 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -27.72 343.07 -11.55 -39.27 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -3.91 Total: 8.85 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.95 Total: -9.67 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.29 Total: -39.71 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 16 Polarization: -12.13 SS G_CDS: -2.69 Total: -14.81 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.72 -11.55 -39.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797408956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.909 kcal (2) G-P(sol) polarization free energy of solvation -27.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds