Wall clock time and date at job start Tue Mar 31 2020 15:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99817 * 2 1 4 4 H 1.48502 * 109.47403 * 270.00815 * 3 2 1 5 5 H 1.48506 * 109.47245 * 30.00814 * 3 2 1 6 6 H 1.48500 * 109.47218 * 150.00291 * 3 2 1 7 7 C 1.37874 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99720 * 175.48609 * 7 2 1 9 9 C 1.50702 * 120.00348 * 355.76720 * 7 2 1 10 10 C 1.52998 * 115.54633 * 272.44748 * 9 7 2 11 11 N 1.46498 * 109.47432 * 294.07920 * 10 9 7 12 12 C 1.34774 * 120.00005 * 184.40014 * 11 10 9 13 13 S 1.71194 * 120.00187 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99857 * 179.97438 * 12 11 10 15 15 C 1.40002 * 119.99909 * 185.30138 * 14 12 11 16 16 C 1.38877 * 120.04244 * 41.56623 * 15 14 12 17 17 C 1.38114 * 119.97416 * 179.97438 * 16 15 14 18 18 C 1.38459 * 120.06123 * 359.97249 * 17 16 15 19 19 F 1.35098 * 119.96101 * 179.97438 * 18 17 16 20 20 C 1.38561 * 120.08024 * 0.02944 * 18 17 16 21 21 Cl 1.73605 * 119.98793 * 179.97438 * 20 18 17 22 22 C 1.38236 * 120.02456 * 359.73809 * 20 18 17 23 23 C 1.52994 * 117.50144 * 126.77912 * 9 7 2 24 24 C 1.52999 * 117.49789 * 58.11357 * 9 7 2 25 25 H 0.96996 * 119.99919 * 4.99350 * 1 2 3 26 26 H 1.09004 * 109.46929 * 54.07634 * 10 9 7 27 27 H 1.08998 * 109.47163 * 174.07319 * 10 9 7 28 28 H 0.97004 * 119.99710 * 4.39485 * 11 10 9 29 29 H 0.97003 * 119.99732 * 5.29772 * 14 12 11 30 30 H 1.07997 * 120.01142 * 0.02562 * 16 15 14 31 31 H 1.07998 * 119.97116 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.03305 * 180.25563 * 22 20 18 33 33 H 1.08996 * 117.49933 * 359.97438 * 23 9 7 34 34 H 1.09002 * 117.50054 * 145.02416 * 23 9 7 35 35 H 1.09006 * 117.49808 * 214.98215 * 24 9 7 36 36 H 1.09001 * 117.50127 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0821 -1.1954 -0.0741 9 6 1.2542 -2.4974 0.0952 10 6 0.9629 -2.9883 1.5147 11 7 2.2226 -3.3200 2.1850 12 6 2.2072 -3.8594 3.4200 13 16 0.7155 -4.1565 4.2057 14 7 3.3661 -4.1650 4.0364 15 6 3.3495 -4.8263 5.2703 16 6 2.4570 -5.8675 5.4892 17 6 2.4422 -6.5192 6.7068 18 6 3.3168 -6.1358 7.7093 19 9 3.3003 -6.7744 8.8998 20 6 4.2083 -5.0973 7.4935 21 17 5.3035 -4.6182 8.7525 22 6 4.2294 -4.4458 6.2745 23 6 1.5357 -3.5549 -0.9741 24 6 0.2088 -2.7916 -0.9825 25 1 -0.4850 0.8368 -0.0731 26 1 0.4502 -2.2044 2.0722 27 1 0.3307 -3.8751 1.4699 28 1 3.0678 -3.1513 1.7399 29 1 4.2117 -3.9268 3.6250 30 1 1.7753 -6.1679 4.7073 31 1 1.7483 -7.3291 6.8768 32 1 4.9270 -3.6390 6.1048 33 1 2.2633 -3.3077 -1.7471 34 1 1.5128 -4.6003 -0.6664 35 1 -0.6864 -3.3352 -0.6803 36 1 0.0634 -2.0421 -1.7606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797408956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:50 Heat of formation + Delta-G solvation = 6.551250 kcal Electronic energy + Delta-G solvation = -22202.769898 eV Core-core repulsion = 18560.820311 eV Total energy + Delta-G solvation = -3641.949588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.051 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.99023 -41.24941 -39.63004 -38.26484 -37.48743 -35.53979 -33.98014 -32.14189 -30.52355 -28.21870 -27.16298 -25.32785 -24.09429 -23.40392 -22.85757 -21.36080 -19.71339 -19.44768 -18.70076 -17.94128 -17.59886 -17.04630 -16.78438 -16.70907 -16.10880 -16.07560 -15.56743 -15.21144 -14.96916 -14.68251 -14.55366 -14.19896 -14.04901 -13.58409 -13.40305 -13.00815 -12.86575 -12.58381 -12.52994 -12.38136 -12.28859 -12.04396 -12.01453 -11.41891 -11.08275 -10.70424 -10.43980 -10.13223 -10.06294 -9.44306 -9.01190 -8.35767 -8.11726 -6.27458 -0.34259 0.01298 0.42473 0.80714 0.92451 1.40605 1.44706 1.47344 1.50886 2.38812 2.39441 2.51894 3.03886 3.16214 3.48546 3.61928 3.95473 4.03067 4.07337 4.19729 4.50667 4.52777 4.63203 4.67928 4.75665 4.78733 5.00834 5.02794 5.07732 5.11360 5.30584 5.44283 5.53902 5.62542 5.70267 5.74739 5.95344 6.31005 6.36706 6.80844 7.43857 8.93965 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002898 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.102706 B = 9658.834363 C =10567.298965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.029 3.971 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.511 4.511 8 H 0.066 0.934 9 C -0.002 4.002 10 C 0.185 3.815 11 N -0.627 5.627 12 C 0.574 3.426 13 S -0.711 6.711 14 N -0.619 5.619 15 C 0.136 3.864 16 C -0.045 4.045 17 C -0.131 4.131 18 C 0.101 3.899 19 F -0.132 7.132 20 C -0.075 4.075 21 Cl -0.047 7.047 22 C -0.084 4.084 23 C -0.178 4.178 24 C -0.147 4.147 25 H 0.259 0.741 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.416 0.584 29 H 0.429 0.571 30 H 0.149 0.851 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.102 -11.644 9.874 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.172 4.172 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.188 1.188 7 C -0.548 4.548 8 H 0.084 0.916 9 C -0.003 4.003 10 C 0.061 3.939 11 N -0.249 5.249 12 C 0.210 3.790 13 S -0.583 6.583 14 N -0.248 5.248 15 C 0.041 3.959 16 C -0.068 4.068 17 C -0.151 4.151 18 C 0.080 3.920 19 F -0.111 7.111 20 C -0.104 4.104 21 Cl -0.018 7.018 22 C -0.106 4.106 23 C -0.215 4.215 24 C -0.185 4.185 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.255 0.745 29 H 0.271 0.729 30 H 0.167 0.833 31 H 0.183 0.817 32 H 0.184 0.816 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.907 -11.606 10.455 19.052 hybrid contribution 1.356 1.638 -0.577 2.204 sum 12.264 -9.967 9.878 18.636 Atomic orbital electron populations 1.70095 1.07138 1.27379 1.49202 1.25647 0.95389 1.01882 0.94327 0.85773 0.78971 0.80197 0.78000 1.20459 1.22111 1.18761 1.20658 0.92956 0.89436 1.51774 0.91638 1.19094 1.00803 0.94098 0.86260 1.21102 0.81895 0.98405 0.92481 1.45083 1.13064 1.54881 1.11870 1.21801 0.91376 0.81221 0.84618 1.93525 1.18405 1.77194 1.69141 1.41878 1.06564 1.56727 1.19651 1.17242 0.99720 0.93788 0.85148 1.21399 0.95385 0.91482 0.98527 1.21079 0.99706 1.02657 0.91684 1.17563 0.98070 0.93636 0.82700 1.91518 1.95681 1.80311 1.43589 1.20581 0.97704 0.99667 0.92476 1.98386 1.61557 1.91107 1.50785 1.20718 1.00973 0.99959 0.88915 1.23052 0.99326 0.95970 1.03132 1.22368 0.92000 1.01426 1.02742 0.93147 0.93186 0.91489 0.74488 0.72888 0.83346 0.81677 0.81615 0.89754 0.89064 0.90966 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.05 12.47 21.45 0.27 -47.78 16 2 C 0.03 1.45 5.42 84.65 0.46 1.91 16 3 Si 0.94 39.72 29.54 68.60 2.03 41.74 16 4 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.51 -23.53 8.65 25.60 0.22 -23.31 16 8 H 0.07 2.87 7.82 -2.91 -0.02 2.85 16 9 C 0.00 -0.06 1.50 -52.93 -0.08 -0.14 16 10 C 0.18 7.16 4.98 86.38 0.43 7.60 16 11 N -0.63 -18.77 5.49 -350.17 -1.92 -20.69 16 12 C 0.57 16.66 7.75 179.05 1.39 18.04 16 13 S -0.71 -27.00 25.00 -56.49 -1.41 -28.42 16 14 N -0.62 -12.52 5.33 -189.95 -1.01 -13.53 16 15 C 0.14 2.84 5.92 38.13 0.23 3.07 16 16 C -0.05 -1.02 7.85 22.39 0.18 -0.85 16 17 C -0.13 -2.63 10.02 22.29 0.22 -2.41 16 18 C 0.10 2.14 7.27 22.40 0.16 2.30 16 19 F -0.13 -2.94 16.83 44.97 0.76 -2.18 16 20 C -0.08 -1.51 6.32 22.35 0.14 -1.37 16 21 Cl -0.05 -0.90 28.61 -2.72 -0.08 -0.98 16 22 C -0.08 -1.53 9.75 22.41 0.22 -1.31 16 23 C -0.18 -6.22 9.96 30.62 0.30 -5.92 16 24 C -0.15 -6.15 9.02 30.62 0.28 -5.88 16 25 H 0.26 13.51 8.32 -92.71 -0.77 12.73 16 26 H 0.05 2.37 8.12 -2.39 -0.02 2.35 16 27 H 0.07 2.61 7.76 -2.39 -0.02 2.59 16 28 H 0.42 10.44 8.38 -92.71 -0.78 9.67 16 29 H 0.43 5.44 8.84 -92.71 -0.82 4.62 16 30 H 0.15 3.82 6.22 -5.26 -0.03 3.79 16 31 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 36 H 0.06 3.03 8.06 -2.39 -0.02 3.01 16 Total: -1.00 -60.26 343.07 2.31 -57.95 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.46 Total: 22.15 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 4.15 Total: -8.26 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.67 Total: -82.00 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.76 Total: -2.18 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.74 kcal Atomic # 16 Polarization: -27.00 SS G_CDS: -1.41 Total: -28.42 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -60.26 2.31 -57.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797408956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.499 kcal (2) G-P(sol) polarization free energy of solvation -60.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds