Wall clock time and date at job start Tue Mar 31 2020 15:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86801 * 119.99910 * 2 1 4 4 H 1.48505 * 109.46880 * 269.99633 * 3 2 1 5 5 H 1.48494 * 109.47441 * 29.99808 * 3 2 1 6 6 H 1.48496 * 109.46922 * 150.00071 * 3 2 1 7 7 C 1.38792 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00189 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00273 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00186 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47289 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47271 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46850 * 179.97438 * 12 11 10 14 14 C 1.34227 * 116.99805 * 180.02562 * 13 12 11 15 15 O 1.20834 * 119.99980 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00367 * 180.02562 * 14 13 12 17 17 C 1.52992 * 109.47517 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47517 * 180.02562 * 17 16 14 19 19 O 1.21450 * 119.99525 * 0.02562 * 18 17 16 20 20 C 1.41226 * 120.00337 * 180.02562 * 18 17 16 21 21 C 1.37186 * 125.48182 * 179.97438 * 20 18 17 22 22 C 1.37205 * 113.24405 * 179.97438 * 21 20 18 23 23 C 1.34016 * 115.14609 * 0.02562 * 22 21 20 24 24 S 1.70608 * 111.00119 * 359.97438 * 23 22 21 25 25 H 0.97009 * 119.99945 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47350 * 60.00270 * 10 9 7 27 27 H 1.08998 * 109.47098 * 299.99813 * 10 9 7 28 28 H 1.09000 * 109.47213 * 59.99526 * 11 10 9 29 29 H 1.09002 * 109.47452 * 300.00128 * 11 10 9 30 30 H 1.08992 * 109.46954 * 60.00188 * 12 11 10 31 31 H 1.08998 * 109.47178 * 299.99972 * 12 11 10 32 32 H 1.09001 * 109.46992 * 59.99779 * 16 14 13 33 33 H 1.09006 * 109.46857 * 300.00266 * 16 14 13 34 34 H 1.09001 * 109.46988 * 59.99999 * 17 16 14 35 35 H 1.09006 * 109.47456 * 300.00122 * 17 16 14 36 36 H 1.08003 * 123.38215 * 0.24702 * 21 20 18 37 37 H 1.08003 * 122.42207 * 180.02562 * 22 21 20 38 38 H 1.08005 * 124.49658 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0865 -2.9845 0.0009 11 6 5.5957 -3.2364 0.0008 12 6 5.8613 -4.7431 0.0012 13 8 7.2936 -4.9820 0.0005 14 6 7.6978 -6.2620 0.0002 15 8 6.8819 -7.1532 0.0010 16 6 9.1693 -6.5875 0.0001 17 6 9.3557 -8.1060 0.0004 18 6 10.8271 -8.4315 0.0009 19 8 11.6472 -7.5357 0.0014 20 6 11.2525 -9.7782 0.0007 21 6 12.5575 -10.2011 0.0006 22 6 12.6841 -11.5673 0.0009 23 6 11.5286 -12.2462 0.0008 24 16 10.1945 -11.1827 0.0009 25 1 -0.4850 0.8401 -0.0004 26 1 3.6440 -3.4314 -0.8893 27 1 3.6433 -3.4317 0.8907 28 1 6.0387 -2.7894 0.8908 29 1 6.0386 -2.7892 -0.8891 30 1 5.4183 -5.1904 -0.8885 31 1 5.4185 -5.1899 0.8914 32 1 9.6351 -6.1644 0.8901 33 1 9.6349 -6.1640 -0.8899 34 1 8.8898 -8.5294 -0.8894 35 1 8.8901 -8.5291 0.8906 36 1 13.4008 -9.5263 0.0045 37 1 13.6452 -12.0598 0.0013 38 1 11.4521 -13.3235 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805339061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:27 Heat of formation + Delta-G solvation = -110.320170 kcal Electronic energy + Delta-G solvation = -20995.596380 eV Core-core repulsion = 17441.790128 eV Total energy + Delta-G solvation = -3553.806252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77135 -40.07703 -37.92361 -36.89941 -33.74768 -33.38309 -32.46192 -30.91518 -27.71329 -26.36363 -25.62080 -24.69523 -21.83978 -21.42548 -20.53445 -19.76120 -18.51713 -17.60864 -17.30328 -17.04574 -16.55551 -16.30390 -15.97183 -15.14105 -15.00670 -14.86772 -14.66462 -14.26763 -13.89448 -13.36780 -13.20890 -13.16758 -12.84815 -12.70735 -12.69804 -12.66242 -12.30353 -11.70985 -11.54585 -11.46421 -11.23160 -11.10341 -10.99126 -10.73667 -10.38830 -10.37587 -10.24669 -9.83004 -9.47467 -9.17959 -9.02999 -8.62003 -6.98813 -6.30575 -4.04015 -0.27692 0.93619 1.33002 1.62137 2.04610 2.40418 2.41001 2.99706 3.28919 3.43885 3.52392 3.68521 4.15092 4.29432 4.39029 4.56425 4.62774 4.71531 4.78161 4.82684 4.91001 5.02335 5.08509 5.11583 5.14099 5.29866 5.37290 5.38246 5.45013 5.62241 5.66656 5.72629 5.73767 6.04301 6.32381 6.35905 6.55994 6.97919 7.60460 7.92948 8.42058 9.14866 10.78770 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.047466 B = 0.001529 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.758724 B =18304.183773 C =18857.589852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.093 3.907 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.084 4.084 11 C -0.102 4.102 12 C 0.072 3.928 13 O -0.354 6.354 14 C 0.462 3.538 15 O -0.512 6.512 16 C -0.104 4.104 17 C -0.161 4.161 18 C 0.427 3.573 19 O -0.449 6.449 20 C -0.311 4.311 21 C -0.042 4.042 22 C -0.159 4.159 23 C -0.225 4.225 24 S 0.238 5.762 25 H 0.271 0.729 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.982 -25.162 0.085 36.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.140 4.140 12 C -0.003 4.003 13 O -0.270 6.270 14 C 0.305 3.695 15 O -0.401 6.401 16 C -0.141 4.141 17 C -0.198 4.198 18 C 0.305 3.695 19 O -0.326 6.326 20 C -0.429 4.429 21 C -0.076 4.076 22 C -0.190 4.190 23 C -0.363 4.363 24 S 0.506 5.494 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 25.065 -24.170 0.090 34.820 hybrid contribution 0.611 -0.400 -0.035 0.731 sum 25.676 -24.570 0.055 35.538 Atomic orbital electron populations 1.69940 1.05920 1.27759 1.48073 1.24785 0.94511 0.99013 0.93265 0.86673 0.81742 0.83199 0.79754 1.19316 1.20027 1.16148 1.22123 0.86983 0.97516 1.58669 0.89315 1.84176 1.11792 1.04293 1.97554 1.22948 0.96003 1.00104 1.04216 1.21335 0.95916 0.92311 1.04458 1.23240 0.76193 0.98019 1.02825 1.86478 1.28815 1.28409 1.83333 1.23566 0.92430 0.81094 0.72450 1.90677 1.55865 1.47929 1.45609 1.21099 0.89524 0.96118 1.07390 1.21910 0.94872 0.96451 1.06595 1.19947 0.91054 0.86417 0.72069 1.90630 1.56448 1.48585 1.36931 1.24151 0.98340 0.99641 1.20751 1.21066 0.96245 0.95661 0.94635 1.20096 0.99572 0.93453 1.05904 1.25624 0.97974 1.05657 1.07054 1.83324 1.07156 0.93461 1.65480 0.91924 0.91019 0.90972 0.90227 0.90231 0.90959 0.90944 0.86816 0.86814 0.87189 0.87191 0.82838 0.83646 0.81176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 2 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 3 Si 0.86 21.40 27.74 -169.99 -4.72 16.69 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 7 C -0.51 -14.60 10.04 30.94 0.31 -14.28 16 8 H 0.09 2.72 8.03 -52.48 -0.42 2.30 16 9 S -0.21 -4.97 19.41 -107.50 -2.09 -7.05 16 10 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 11 C -0.10 -1.55 5.60 -26.73 -0.15 -1.70 16 12 C 0.07 0.98 5.47 37.16 0.20 1.19 16 13 O -0.35 -4.59 10.22 -39.25 -0.40 -5.00 16 14 C 0.46 5.37 7.96 36.01 0.29 5.66 16 15 O -0.51 -7.09 15.73 -18.76 -0.30 -7.38 16 16 C -0.10 -0.87 5.10 -27.89 -0.14 -1.01 16 17 C -0.16 -1.18 4.28 -27.89 -0.12 -1.30 16 18 C 0.43 3.50 6.93 -33.17 -0.23 3.27 16 19 O -0.45 -4.83 16.36 5.41 0.09 -4.74 16 20 C -0.31 -2.20 6.23 -38.83 -0.24 -2.45 16 21 C -0.04 -0.27 9.95 -40.34 -0.40 -0.67 16 22 C -0.16 -0.77 10.14 -41.44 -0.42 -1.19 16 23 C -0.22 -0.96 10.93 29.25 0.32 -0.64 16 24 S 0.24 1.21 22.42 -107.50 -2.41 -1.20 16 25 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.07 1.35 8.14 -51.91 -0.42 0.93 16 27 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.11 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.11 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.11 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.11 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.15 0.91 8.02 -52.48 -0.42 0.48 16 37 H 0.15 0.42 8.06 -52.48 -0.42 -0.01 16 38 H 0.17 0.34 8.06 -52.48 -0.42 -0.09 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -33.66 362.31 -9.12 -42.77 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.06 Total: -1.80 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.47 Total: -11.92 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.78 Total: -25.83 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.61 Total: -17.12 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.72 Total: 16.69 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -4.50 Total: -8.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.66 -9.12 -42.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805339061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.545 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds