Wall clock time and date at job start Tue Mar 31 2020 15:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86801 * 119.99910 * 2 1 4 4 H 1.48505 * 109.46880 * 269.99633 * 3 2 1 5 5 H 1.48494 * 109.47441 * 29.99808 * 3 2 1 6 6 H 1.48496 * 109.46922 * 150.00071 * 3 2 1 7 7 C 1.38792 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00189 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00273 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00186 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47289 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47271 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46850 * 179.97438 * 12 11 10 14 14 C 1.34227 * 116.99805 * 180.02562 * 13 12 11 15 15 O 1.20834 * 119.99980 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00367 * 180.02562 * 14 13 12 17 17 C 1.52992 * 109.47517 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47517 * 180.02562 * 17 16 14 19 19 O 1.21450 * 119.99525 * 0.02562 * 18 17 16 20 20 C 1.41226 * 120.00337 * 180.02562 * 18 17 16 21 21 C 1.37186 * 125.48182 * 179.97438 * 20 18 17 22 22 C 1.37205 * 113.24405 * 179.97438 * 21 20 18 23 23 C 1.34016 * 115.14609 * 0.02562 * 22 21 20 24 24 S 1.70608 * 111.00119 * 359.97438 * 23 22 21 25 25 H 0.97009 * 119.99945 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47350 * 60.00270 * 10 9 7 27 27 H 1.08998 * 109.47098 * 299.99813 * 10 9 7 28 28 H 1.09000 * 109.47213 * 59.99526 * 11 10 9 29 29 H 1.09002 * 109.47452 * 300.00128 * 11 10 9 30 30 H 1.08992 * 109.46954 * 60.00188 * 12 11 10 31 31 H 1.08998 * 109.47178 * 299.99972 * 12 11 10 32 32 H 1.09001 * 109.46992 * 59.99779 * 16 14 13 33 33 H 1.09006 * 109.46857 * 300.00266 * 16 14 13 34 34 H 1.09001 * 109.46988 * 59.99999 * 17 16 14 35 35 H 1.09006 * 109.47456 * 300.00122 * 17 16 14 36 36 H 1.08003 * 123.38215 * 0.24702 * 21 20 18 37 37 H 1.08003 * 122.42207 * 180.02562 * 22 21 20 38 38 H 1.08005 * 124.49658 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0865 -2.9845 0.0009 11 6 5.5957 -3.2364 0.0008 12 6 5.8613 -4.7431 0.0012 13 8 7.2936 -4.9820 0.0005 14 6 7.6978 -6.2620 0.0002 15 8 6.8819 -7.1532 0.0010 16 6 9.1693 -6.5875 0.0001 17 6 9.3557 -8.1060 0.0004 18 6 10.8271 -8.4315 0.0009 19 8 11.6472 -7.5357 0.0014 20 6 11.2525 -9.7782 0.0007 21 6 12.5575 -10.2011 0.0006 22 6 12.6841 -11.5673 0.0009 23 6 11.5286 -12.2462 0.0008 24 16 10.1945 -11.1827 0.0009 25 1 -0.4850 0.8401 -0.0004 26 1 3.6440 -3.4314 -0.8893 27 1 3.6433 -3.4317 0.8907 28 1 6.0387 -2.7894 0.8908 29 1 6.0386 -2.7892 -0.8891 30 1 5.4183 -5.1904 -0.8885 31 1 5.4185 -5.1899 0.8914 32 1 9.6351 -6.1644 0.8901 33 1 9.6349 -6.1640 -0.8899 34 1 8.8898 -8.5294 -0.8894 35 1 8.8901 -8.5291 0.8906 36 1 13.4008 -9.5263 0.0045 37 1 13.6452 -12.0598 0.0013 38 1 11.4521 -13.3235 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805339061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:26 Heat of formation + Delta-G solvation = -128.774984 kcal Electronic energy + Delta-G solvation = -20996.396641 eV Core-core repulsion = 17441.790128 eV Total energy + Delta-G solvation = -3554.606513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67161 -40.76195 -38.37991 -37.91455 -34.96023 -34.68666 -34.17570 -31.41216 -28.64134 -27.95270 -27.13195 -25.30890 -22.86295 -22.39593 -21.27174 -20.20153 -19.65448 -19.16274 -18.28514 -17.98898 -17.34246 -17.10483 -16.85672 -16.76637 -16.12539 -15.94951 -15.64299 -15.09917 -14.94550 -14.69594 -14.29063 -14.01928 -13.94950 -13.71893 -13.59594 -13.39509 -13.17332 -13.04859 -13.03322 -12.61182 -12.40015 -12.33642 -12.24852 -11.86003 -11.81624 -11.53524 -11.51323 -11.16813 -11.01448 -10.60596 -9.91033 -9.55999 -9.01107 -8.52347 -6.24645 -0.74057 0.53169 0.94616 1.06199 1.11971 1.15958 1.32914 1.43802 1.51177 1.83361 1.91504 2.24661 2.65745 2.85837 3.04848 3.48517 3.78596 3.83160 3.96137 3.97299 4.08221 4.12308 4.27224 4.29210 4.36439 4.46675 4.52655 4.58716 4.65058 4.69016 4.83845 4.98830 5.01461 5.10012 5.22667 5.33819 5.43534 5.68987 6.09747 6.39163 6.64998 6.91371 8.60620 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.047466 B = 0.001529 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.758724 B =18304.183773 C =18857.589852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.039 3.961 3 Si 0.926 3.074 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.228 1.228 7 C -0.527 4.527 8 H 0.051 0.949 9 S -0.208 6.208 10 C -0.074 4.074 11 C -0.089 4.089 12 C 0.078 3.922 13 O -0.358 6.358 14 C 0.464 3.536 15 O -0.535 6.535 16 C -0.097 4.097 17 C -0.157 4.157 18 C 0.433 3.567 19 O -0.484 6.484 20 C -0.342 4.342 21 C -0.046 4.046 22 C -0.170 4.170 23 C -0.215 4.215 24 S 0.252 5.748 25 H 0.277 0.723 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.152 0.848 37 H 0.166 0.834 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.044 -26.061 0.109 38.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.166 4.166 3 Si 0.746 3.254 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.151 1.151 7 C -0.674 4.674 8 H 0.070 0.930 9 S 0.020 5.980 10 C -0.222 4.222 11 C -0.128 4.128 12 C 0.002 3.998 13 O -0.274 6.274 14 C 0.309 3.691 15 O -0.425 6.425 16 C -0.135 4.135 17 C -0.195 4.195 18 C 0.314 3.686 19 O -0.364 6.364 20 C -0.460 4.460 21 C -0.081 4.081 22 C -0.200 4.200 23 C -0.353 4.353 24 S 0.521 5.479 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.169 0.831 37 H 0.183 0.817 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 27.126 -25.091 0.116 36.951 hybrid contribution -0.025 -0.346 -0.047 0.350 sum 27.100 -25.437 0.068 37.168 Atomic orbital electron populations 1.70043 1.07685 1.29151 1.49054 1.25774 0.95407 1.02781 0.92635 0.85713 0.80790 0.78574 0.80274 1.18550 1.18738 1.15101 1.22355 0.90094 0.96359 1.58600 0.93042 1.83835 1.07500 1.09070 1.97597 1.22975 0.98897 0.96070 1.04280 1.21158 0.92857 0.93758 1.05010 1.23025 0.76988 0.96606 1.03145 1.86471 1.28061 1.29379 1.83531 1.24135 0.93403 0.80228 0.71352 1.90671 1.56723 1.48314 1.46754 1.21164 0.87089 0.96963 1.08259 1.21910 0.94535 0.95773 1.07269 1.20071 0.90979 0.86683 0.70859 1.90614 1.57150 1.49515 1.39095 1.24166 0.99255 0.99839 1.22751 1.21266 0.96087 0.96623 0.94111 1.20302 1.00801 0.92802 1.06061 1.26013 0.97335 1.06909 1.05053 1.83262 1.07023 0.92646 1.64993 0.91370 0.91009 0.90969 0.89694 0.89672 0.90716 0.90701 0.85890 0.85885 0.86508 0.86511 0.83077 0.81683 0.78573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.65 13.97 21.65 0.30 -56.35 16 2 C 0.04 2.28 5.50 84.86 0.47 2.74 16 3 Si 0.93 43.79 27.74 68.60 1.90 45.70 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.23 -10.33 6.74 99.48 0.67 -9.66 16 7 C -0.53 -30.95 10.04 67.95 0.68 -30.27 16 8 H 0.05 3.29 8.03 -2.91 -0.02 3.27 16 9 S -0.21 -9.87 19.41 -56.49 -1.10 -10.96 16 10 C -0.07 -2.74 5.67 71.98 0.41 -2.33 16 11 C -0.09 -2.56 5.60 30.59 0.17 -2.39 16 12 C 0.08 1.99 5.47 71.98 0.39 2.38 16 13 O -0.36 -8.68 10.22 -51.39 -0.53 -9.20 16 14 C 0.46 10.15 7.96 71.24 0.57 10.72 16 15 O -0.53 -14.15 15.73 21.94 0.35 -13.80 16 16 C -0.10 -1.51 5.10 29.85 0.15 -1.36 16 17 C -0.16 -2.15 4.28 29.85 0.13 -2.02 16 18 C 0.43 6.91 6.93 26.42 0.18 7.10 16 19 O -0.48 -10.40 16.36 -3.56 -0.06 -10.45 16 20 C -0.34 -4.61 6.23 22.76 0.14 -4.47 16 21 C -0.05 -0.56 9.95 21.78 0.22 -0.34 16 22 C -0.17 -1.33 10.14 21.06 0.21 -1.12 16 23 C -0.21 -1.32 10.93 66.86 0.73 -0.59 16 24 S 0.25 2.17 22.42 -56.49 -1.27 0.90 16 25 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16 26 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.07 2.68 8.14 -2.40 -0.02 2.67 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 31 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 32 H 0.12 1.72 8.10 -2.39 -0.02 1.70 16 33 H 0.12 1.72 8.10 -2.38 -0.02 1.70 16 34 H 0.12 1.44 8.10 -2.39 -0.02 1.42 16 35 H 0.12 1.44 8.10 -2.38 -0.02 1.42 16 36 H 0.15 1.78 8.02 -2.91 -0.02 1.76 16 37 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 38 H 0.20 0.11 8.06 -2.91 -0.02 0.08 16 Total: -1.00 -72.64 362.31 5.08 -67.56 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.03 Total: 8.55 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 4.45 Total: -21.94 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.30 Total: -56.35 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.24 Total: -33.46 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.90 Total: 45.70 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -2.36 Total: -10.06 kcal Total: -72.64 5.08 -67.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805339061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.220 kcal (2) G-P(sol) polarization free energy of solvation -72.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds