Wall clock time and date at job start Tue Mar 31 2020 15:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 109.46783 * 2 1 4 4 C 1.76200 * 103.00169 * 250.94787 * 2 1 3 5 5 C 1.38366 * 119.85018 * 269.72353 * 4 2 1 6 6 C 1.37941 * 120.15358 * 180.27327 * 5 4 2 7 7 C 1.39627 * 119.84798 * 0.02759 * 6 5 4 8 8 C 1.47732 * 120.15335 * 179.97438 * 7 6 5 9 9 O 1.21468 * 119.99877 * 180.02562 * 8 7 6 10 10 O 1.34714 * 119.99456 * 0.02562 * 8 7 6 11 11 C 1.45197 * 116.99601 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46936 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47191 * 179.97438 * 12 11 10 14 14 S 1.80997 * 109.47425 * 180.02562 * 13 12 11 15 15 C 1.76197 * 100.00167 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00030 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99981 * 180.02562 * 15 14 13 18 18 N 1.31633 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47423 * 89.99415 * 19 17 15 21 21 H 1.48498 * 109.47277 * 209.99815 * 19 17 15 22 22 H 1.48501 * 109.46893 * 329.99242 * 19 17 15 23 23 C 1.39634 * 119.69966 * 359.96968 * 7 6 5 24 24 C 1.37938 * 119.84799 * 0.02562 * 23 7 6 25 25 H 1.09000 * 109.46792 * 169.05532 * 1 2 3 26 26 H 1.09001 * 109.47175 * 289.04925 * 1 2 3 27 27 H 1.08996 * 109.47466 * 49.05676 * 1 2 3 28 28 H 1.08004 * 119.92152 * 0.25596 * 5 4 2 29 29 H 1.07997 * 120.08062 * 179.97438 * 6 5 4 30 30 H 1.08994 * 109.47284 * 300.00127 * 11 10 8 31 31 H 1.09006 * 109.47267 * 59.99853 * 11 10 8 32 32 H 1.09002 * 109.47561 * 300.00160 * 12 11 10 33 33 H 1.09000 * 109.46992 * 60.00822 * 12 11 10 34 34 H 1.09002 * 109.47028 * 300.00522 * 13 12 11 35 35 H 1.09006 * 109.46642 * 60.00116 * 13 12 11 36 36 H 0.97003 * 119.99723 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.07359 * 180.02562 * 23 7 6 38 38 H 1.07999 * 119.92849 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2104 -0.5604 -1.6228 5 6 2.3710 -1.9134 -1.8641 6 6 2.6869 -2.3586 -3.1309 7 6 2.8452 -1.4404 -4.1708 8 6 3.1841 -1.9097 -5.5300 9 8 3.3216 -1.1084 -6.4325 10 8 3.3405 -3.2263 -5.7684 11 6 3.6724 -3.6152 -7.1273 12 6 3.8097 -5.1371 -7.2031 13 6 4.1588 -5.5470 -8.6353 14 16 4.3205 -7.3475 -8.7252 15 6 4.7137 -7.5345 -10.4325 16 1 4.7867 -6.6646 -11.0684 17 6 4.9298 -8.7999 -10.9603 18 7 4.8414 -9.8602 -10.1853 19 14 5.3474 -8.9982 -12.7702 20 1 6.8208 -8.9443 -12.9471 21 1 4.8382 -10.3061 -13.2554 22 1 4.7151 -7.9019 -13.5471 23 6 2.6816 -0.0764 -3.9203 24 6 2.3657 0.3550 -2.6488 25 1 -0.3633 -1.0090 -0.1951 26 1 -0.3633 0.3354 0.9714 27 1 -0.3634 0.6734 -0.7762 28 1 2.2490 -2.6225 -1.0586 29 1 2.8124 -3.4148 -3.3178 30 1 2.8821 -3.2872 -7.8024 31 1 4.6147 -3.1508 -7.4183 32 1 4.6003 -5.4647 -6.5281 33 1 2.8676 -5.6018 -6.9122 34 1 3.3679 -5.2194 -9.3100 35 1 5.1008 -5.0822 -8.9268 36 1 4.9928 -10.7445 -10.5541 37 1 2.8022 0.6390 -4.7203 38 1 2.2384 1.4095 -2.4537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805347138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:01 Heat of formation + Delta-G solvation = -109.588245 kcal Electronic energy + Delta-G solvation = -21272.293822 eV Core-core repulsion = 17718.519309 eV Total energy + Delta-G solvation = -3553.774514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78121 -39.11229 -36.77191 -36.25435 -33.61814 -32.47185 -31.95691 -31.52637 -29.32743 -26.91622 -25.58113 -24.55313 -23.20466 -21.45100 -21.22510 -18.76314 -18.16816 -17.46033 -17.30778 -16.70405 -16.60477 -15.57938 -15.35521 -15.14306 -14.84237 -14.75390 -14.48674 -14.24229 -13.90472 -13.79249 -13.40309 -13.26591 -12.93350 -12.73884 -12.69140 -12.31344 -12.15475 -11.69948 -11.39474 -11.19537 -11.04040 -10.99597 -10.88517 -10.73027 -10.62119 -10.36271 -9.79769 -9.67182 -9.51092 -9.10180 -8.94182 -8.39449 -6.59603 -6.27485 -3.98727 -0.07136 0.85689 1.24613 1.99006 2.29678 2.38812 3.19445 3.20130 3.20321 3.27010 3.40668 3.50150 4.17355 4.24897 4.44280 4.45351 4.65392 4.72670 4.83755 4.94468 5.04866 5.09386 5.11653 5.16220 5.32750 5.41701 5.44994 5.46391 5.58611 5.68829 5.72255 5.77756 5.90321 6.09035 6.29378 6.31706 6.39859 6.61550 7.52824 7.56605 8.32216 9.19072 10.80640 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.039807 B = 0.001647 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.224710 B =16996.936850 C =17508.211639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.335 4.665 3 O -0.854 6.854 4 C -0.436 4.436 5 C -0.057 4.057 6 C -0.078 4.078 7 C -0.086 4.086 8 C 0.503 3.497 9 O -0.502 6.502 10 O -0.348 6.348 11 C 0.073 3.927 12 C -0.097 4.097 13 C -0.115 4.115 14 S -0.123 6.123 15 C -0.519 4.519 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.869 5.869 19 Si 0.920 3.080 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.072 4.072 24 C -0.067 4.067 25 H 0.114 0.886 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.268 0.732 37 H 0.140 0.860 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 16.300 23.628 29.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.532 4.468 3 O -0.849 6.849 4 C -0.532 4.532 5 C -0.076 4.076 6 C -0.097 4.097 7 C -0.087 4.087 8 C 0.347 3.653 9 O -0.391 6.391 10 O -0.265 6.265 11 C -0.002 4.002 12 C -0.136 4.136 13 C -0.264 4.264 14 S 0.106 5.894 15 C -0.667 4.667 16 H 0.092 0.908 17 C -0.137 4.137 18 N -0.505 5.505 19 Si 0.746 3.254 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.091 4.091 24 C -0.086 4.086 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.158 0.842 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.425 15.779 24.851 30.359 hybrid contribution -0.434 2.074 -4.165 4.673 sum -7.859 17.853 20.686 28.433 Atomic orbital electron populations 1.27755 1.21880 1.08286 1.07544 1.69666 0.86246 0.99635 0.91267 1.93128 1.73254 1.37254 1.81299 1.28043 1.08784 0.99787 1.16538 1.20891 0.95989 0.93624 0.97124 1.21705 0.95386 1.00595 0.92011 1.19415 1.03730 0.94435 0.91154 1.21141 0.74075 0.81301 0.88807 1.90849 1.46578 1.55665 1.46002 1.86509 1.80251 1.24732 1.34961 1.23346 1.01308 0.97028 0.78512 1.21290 1.03848 0.90904 0.97518 1.23187 1.02978 1.03557 0.96667 1.84631 1.92082 0.96987 1.15743 1.22699 1.55154 0.95545 0.93338 0.90833 1.25016 0.94759 0.94880 0.99073 1.70016 1.46402 0.98390 1.35651 0.86145 0.78752 0.77769 0.82753 1.20225 1.20708 1.19674 1.21386 0.95816 0.94287 0.97630 1.21072 0.95817 0.99985 0.91708 0.86756 0.87398 0.89832 0.83448 0.83288 0.90969 0.90946 0.90235 0.90269 0.91712 0.91697 0.92227 0.84196 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -1.69 10.70 101.05 1.08 -0.61 16 2 S 1.34 5.58 14.18 -107.50 -1.52 4.06 16 3 O -0.85 -9.40 16.89 -35.23 -0.59 -9.99 16 4 C -0.44 -2.91 5.62 -39.48 -0.22 -3.13 16 5 C -0.06 -0.30 9.73 -39.64 -0.39 -0.69 16 6 C -0.08 -0.62 9.62 -39.17 -0.38 -0.99 16 7 C -0.09 -0.92 5.87 -104.98 -0.62 -1.54 16 8 C 0.50 6.73 7.90 34.61 0.27 7.00 16 9 O -0.50 -8.01 16.14 -19.24 -0.31 -8.32 16 10 O -0.35 -4.64 9.47 -40.53 -0.38 -5.03 16 11 C 0.07 1.03 5.47 37.16 0.20 1.23 16 12 C -0.10 -1.52 5.60 -26.73 -0.15 -1.67 16 13 C -0.12 -2.25 5.67 37.16 0.21 -2.04 16 14 S -0.12 -3.13 21.44 -107.50 -2.30 -5.43 16 15 C -0.52 -14.69 9.50 30.94 0.29 -14.40 16 16 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 17 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 18 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 19 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.07 -0.74 9.60 -39.17 -0.38 -1.12 16 24 C -0.07 -0.62 9.42 -39.64 -0.37 -0.99 16 25 H 0.11 0.15 8.14 -51.92 -0.42 -0.27 16 26 H 0.11 0.26 8.14 -51.92 -0.42 -0.16 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.15 0.09 8.06 -52.48 -0.42 -0.33 16 29 H 0.15 1.01 7.61 -52.49 -0.40 0.61 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 35 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.14 1.43 7.65 -52.49 -0.40 1.03 16 38 H 0.14 1.29 7.44 -52.49 -0.39 0.90 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -38.20 362.55 -9.44 -47.64 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.96 Total: -2.82 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -0.53 Total: -17.03 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.73 Total: -24.85 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -1.29 Total: -23.34 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -3.83 Total: -1.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.20 -9.44 -47.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805347138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.950 kcal (2) G-P(sol) polarization free energy of solvation -38.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds