Wall clock time and date at job start Tue Mar 31 2020 15:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 109.46783 * 2 1 4 4 C 1.76200 * 103.00169 * 250.94787 * 2 1 3 5 5 C 1.38366 * 119.85018 * 269.72353 * 4 2 1 6 6 C 1.37941 * 120.15358 * 180.27327 * 5 4 2 7 7 C 1.39627 * 119.84798 * 0.02759 * 6 5 4 8 8 C 1.47732 * 120.15335 * 179.97438 * 7 6 5 9 9 O 1.21468 * 119.99877 * 180.02562 * 8 7 6 10 10 O 1.34714 * 119.99456 * 0.02562 * 8 7 6 11 11 C 1.45197 * 116.99601 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46936 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47191 * 179.97438 * 12 11 10 14 14 S 1.80997 * 109.47425 * 180.02562 * 13 12 11 15 15 C 1.76197 * 100.00167 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00030 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99981 * 180.02562 * 15 14 13 18 18 N 1.31633 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47423 * 89.99415 * 19 17 15 21 21 H 1.48498 * 109.47277 * 209.99815 * 19 17 15 22 22 H 1.48501 * 109.46893 * 329.99242 * 19 17 15 23 23 C 1.39634 * 119.69966 * 359.96968 * 7 6 5 24 24 C 1.37938 * 119.84799 * 0.02562 * 23 7 6 25 25 H 1.09000 * 109.46792 * 169.05532 * 1 2 3 26 26 H 1.09001 * 109.47175 * 289.04925 * 1 2 3 27 27 H 1.08996 * 109.47466 * 49.05676 * 1 2 3 28 28 H 1.08004 * 119.92152 * 0.25596 * 5 4 2 29 29 H 1.07997 * 120.08062 * 179.97438 * 6 5 4 30 30 H 1.08994 * 109.47284 * 300.00127 * 11 10 8 31 31 H 1.09006 * 109.47267 * 59.99853 * 11 10 8 32 32 H 1.09002 * 109.47561 * 300.00160 * 12 11 10 33 33 H 1.09000 * 109.46992 * 60.00822 * 12 11 10 34 34 H 1.09002 * 109.47028 * 300.00522 * 13 12 11 35 35 H 1.09006 * 109.46642 * 60.00116 * 13 12 11 36 36 H 0.97003 * 119.99723 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.07359 * 180.02562 * 23 7 6 38 38 H 1.07999 * 119.92849 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2104 -0.5604 -1.6228 5 6 2.3710 -1.9134 -1.8641 6 6 2.6869 -2.3586 -3.1309 7 6 2.8452 -1.4404 -4.1708 8 6 3.1841 -1.9097 -5.5300 9 8 3.3216 -1.1084 -6.4325 10 8 3.3405 -3.2263 -5.7684 11 6 3.6724 -3.6152 -7.1273 12 6 3.8097 -5.1371 -7.2031 13 6 4.1588 -5.5470 -8.6353 14 16 4.3205 -7.3475 -8.7252 15 6 4.7137 -7.5345 -10.4325 16 1 4.7867 -6.6646 -11.0684 17 6 4.9298 -8.7999 -10.9603 18 7 4.8414 -9.8602 -10.1853 19 14 5.3474 -8.9982 -12.7702 20 1 6.8208 -8.9443 -12.9471 21 1 4.8382 -10.3061 -13.2554 22 1 4.7151 -7.9019 -13.5471 23 6 2.6816 -0.0764 -3.9203 24 6 2.3657 0.3550 -2.6488 25 1 -0.3633 -1.0090 -0.1951 26 1 -0.3633 0.3354 0.9714 27 1 -0.3634 0.6734 -0.7762 28 1 2.2490 -2.6225 -1.0586 29 1 2.8124 -3.4148 -3.3178 30 1 2.8821 -3.2872 -7.8024 31 1 4.6147 -3.1508 -7.4183 32 1 4.6003 -5.4647 -6.5281 33 1 2.8676 -5.6018 -6.9122 34 1 3.3679 -5.2194 -9.3100 35 1 5.1008 -5.0822 -8.9268 36 1 4.9928 -10.7445 -10.5541 37 1 2.8022 0.6390 -4.7203 38 1 2.2384 1.4095 -2.4537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805347138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:00 Heat of formation + Delta-G solvation = -134.580974 kcal Electronic energy + Delta-G solvation = -21273.377588 eV Core-core repulsion = 17718.519309 eV Total energy + Delta-G solvation = -3554.858280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.77977 -39.85185 -37.89345 -36.92821 -34.96555 -34.58982 -32.69116 -32.15495 -29.62508 -28.31649 -27.55156 -25.48338 -23.85528 -22.77720 -22.14708 -19.65053 -19.33056 -18.90047 -18.25748 -17.83336 -17.25194 -16.90112 -16.38820 -16.10161 -16.06706 -15.80095 -15.70048 -15.08059 -14.72880 -14.51358 -14.36244 -14.34372 -13.91108 -13.82994 -13.70953 -13.35687 -13.16650 -12.95771 -12.81041 -12.65258 -12.44715 -12.44091 -12.26510 -11.93943 -11.58134 -11.51764 -11.35745 -11.15379 -10.48118 -10.36995 -10.13253 -9.41968 -8.67711 -8.38674 -6.14743 -0.77174 0.22665 0.80359 1.20837 1.24559 1.37318 1.39206 1.49802 1.76299 1.80343 2.26385 2.54273 2.93801 2.95934 3.26224 3.44595 3.68369 3.82209 3.84570 3.93593 4.11456 4.24788 4.26031 4.29752 4.36800 4.44998 4.53470 4.56449 4.66951 4.88658 4.91824 5.00531 5.06961 5.10590 5.18600 5.22222 5.30148 5.39645 5.70704 6.17237 6.48038 7.04132 8.70533 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.039807 B = 0.001647 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.224710 B =16996.936850 C =17508.211639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.409 4.591 3 O -0.923 6.923 4 C -0.435 4.435 5 C -0.038 4.038 6 C -0.076 4.076 7 C -0.111 4.111 8 C 0.504 3.496 9 O -0.537 6.537 10 O -0.343 6.343 11 C 0.079 3.921 12 C -0.083 4.083 13 C -0.094 4.094 14 S -0.178 6.178 15 C -0.543 4.543 16 H 0.073 0.927 17 C 0.018 3.982 18 N -0.905 5.905 19 Si 0.993 3.007 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.265 1.265 23 C -0.087 4.087 24 C -0.087 4.087 25 H 0.145 0.855 26 H 0.123 0.877 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.165 0.835 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.272 0.728 37 H 0.126 0.874 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 15.549 25.206 30.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.606 4.394 3 O -0.919 6.919 4 C -0.530 4.530 5 C -0.056 4.056 6 C -0.095 4.095 7 C -0.112 4.112 8 C 0.350 3.650 9 O -0.429 6.429 10 O -0.259 6.259 11 C 0.004 3.996 12 C -0.122 4.122 13 C -0.243 4.243 14 S 0.051 5.949 15 C -0.691 4.691 16 H 0.091 0.909 17 C -0.188 4.188 18 N -0.541 5.541 19 Si 0.815 3.185 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.189 1.189 23 C -0.106 4.106 24 C -0.106 4.106 25 H 0.164 0.836 26 H 0.141 0.859 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.183 0.817 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.148 15.029 26.436 31.482 hybrid contribution -0.306 2.352 -4.489 5.077 sum -8.455 17.381 21.947 29.245 Atomic orbital electron populations 1.27769 1.20253 1.09841 1.07755 1.68852 0.85952 0.96479 0.88163 1.93006 1.75869 1.40887 1.82117 1.28471 1.07434 1.00293 1.16771 1.21546 0.92828 0.93751 0.97516 1.22032 0.94385 1.00822 0.92213 1.19387 1.06278 0.94985 0.90539 1.21666 0.72966 0.80717 0.89617 1.90828 1.48441 1.56277 1.47313 1.86488 1.80243 1.24970 1.34180 1.23114 1.01540 0.95702 0.79218 1.21098 1.04163 0.92001 0.94926 1.23085 1.03283 0.98591 0.99376 1.84558 1.92231 1.02970 1.15186 1.23065 1.55546 0.96007 0.94491 0.90922 1.26025 0.94290 0.94408 1.04036 1.70135 1.47153 0.98971 1.37839 0.85035 0.78787 0.78062 0.76651 1.19325 1.19808 1.18947 1.21307 0.97123 0.94267 0.97923 1.21074 0.97200 1.00124 0.92157 0.83642 0.85880 0.91936 0.77533 0.81745 0.90828 0.90868 0.89799 0.89787 0.91464 0.91459 0.91862 0.85628 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -1.82 10.70 113.37 1.21 -0.61 16 2 S 1.41 8.37 14.18 -56.49 -0.80 7.57 16 3 O -0.92 -19.91 16.89 -148.98 -2.52 -22.42 16 4 C -0.43 -4.87 5.62 22.33 0.13 -4.74 16 5 C -0.04 -0.25 9.73 22.23 0.22 -0.03 16 6 C -0.08 -1.00 9.62 22.53 0.22 -0.78 16 7 C -0.11 -2.34 5.87 -20.10 -0.12 -2.46 16 8 C 0.50 13.56 7.90 70.33 0.56 14.11 16 9 O -0.54 -17.73 16.14 19.94 0.32 -17.41 16 10 O -0.34 -8.81 9.47 -56.24 -0.53 -9.34 16 11 C 0.08 2.17 5.47 71.98 0.39 2.57 16 12 C -0.08 -2.52 5.60 30.59 0.17 -2.35 16 13 C -0.09 -3.65 5.67 71.98 0.41 -3.24 16 14 S -0.18 -9.18 21.44 -56.49 -1.21 -10.39 16 15 C -0.54 -30.95 9.50 67.95 0.65 -30.30 16 16 H 0.07 4.00 7.80 -2.91 -0.02 3.98 16 17 C 0.02 1.00 5.49 84.86 0.47 1.46 16 18 N -0.90 -53.62 13.22 21.65 0.29 -53.33 16 19 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 C -0.09 -1.88 9.60 22.54 0.22 -1.66 16 24 C -0.09 -1.63 9.42 22.23 0.21 -1.42 16 25 H 0.15 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.21 -1.15 8.06 -2.91 -0.02 -1.17 16 29 H 0.17 1.66 7.61 -2.91 -0.02 1.64 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.00 8.14 -2.38 -0.02 1.99 16 32 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.13 2.91 7.65 -2.91 -0.02 2.89 16 38 H 0.12 2.55 7.44 -2.91 -0.02 2.53 16 Total: -1.00 -86.11 362.55 3.36 -82.75 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.06 Total: 6.52 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 4.72 Total: -29.45 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.29 Total: -53.33 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -2.73 Total: -49.18 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.01 Total: -2.82 kcal Total: -86.11 3.36 -82.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805347138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.830 kcal (2) G-P(sol) polarization free energy of solvation -86.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds