Wall clock time and date at job start Tue Mar 31 2020 15:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42100 * 109.47244 * 2 1 4 4 C 1.76200 * 103.00292 * 109.05907 * 2 1 3 5 5 C 1.38366 * 119.84697 * 90.00052 * 4 2 1 6 6 C 1.37947 * 120.14940 * 179.97438 * 5 4 2 7 7 C 1.39638 * 119.84632 * 0.02562 * 6 5 4 8 8 C 1.47726 * 120.14673 * 180.02562 * 7 6 5 9 9 O 1.21462 * 120.00112 * 359.97438 * 8 7 6 10 10 O 1.34713 * 119.99369 * 179.97438 * 8 7 6 11 11 C 1.45208 * 116.99431 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46664 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46810 * 180.02562 * 12 11 10 14 14 S 1.81003 * 109.46989 * 179.97438 * 13 12 11 15 15 C 1.76204 * 99.99886 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99931 * 359.97438 * 15 14 13 17 17 C 1.38800 * 119.99738 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00340 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99659 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47461 * 59.99651 * 19 17 15 21 21 H 1.48502 * 109.47255 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47180 * 299.99347 * 19 17 15 23 23 C 1.39621 * 119.69962 * 0.27203 * 7 6 5 24 24 C 1.37952 * 119.84789 * 359.42616 * 23 7 6 25 25 H 1.09003 * 109.46597 * 310.94007 * 1 2 3 26 26 H 1.08993 * 109.47775 * 70.93883 * 1 2 3 27 27 H 1.08999 * 109.46963 * 190.94766 * 1 2 3 28 28 H 1.07993 * 119.92708 * 359.97269 * 5 4 2 29 29 H 1.07995 * 120.07944 * 179.97438 * 6 5 4 30 30 H 1.08995 * 109.46854 * 300.00134 * 11 10 8 31 31 H 1.08994 * 109.47061 * 60.00296 * 11 10 8 32 32 H 1.09006 * 109.46715 * 299.99572 * 12 11 10 33 33 H 1.08994 * 109.47596 * 60.00066 * 12 11 10 34 34 H 1.08998 * 109.47065 * 299.99458 * 13 12 11 35 35 H 1.08994 * 109.47204 * 59.99560 * 13 12 11 36 36 H 0.96997 * 120.00220 * 180.02562 * 18 17 15 37 37 H 1.08004 * 120.07573 * 179.70361 * 23 7 6 38 38 H 1.07998 * 119.92402 * 180.29633 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3654 -1.9140 1.8650 6 6 2.6762 -2.3598 3.1329 7 6 2.8340 -1.4416 4.1731 8 6 3.1675 -1.9116 5.5333 9 8 3.3046 -3.0991 5.7490 10 8 3.3196 -1.0231 6.5344 11 6 3.6464 -1.5563 7.8449 12 6 3.7778 -0.4060 8.8451 13 6 4.1228 -0.9678 10.2259 14 16 4.2790 0.3931 11.4090 15 6 4.6667 -0.5139 12.8691 16 1 4.7394 -1.5908 12.8325 17 6 4.8776 0.1556 14.0665 18 7 4.7885 1.4682 14.1112 19 14 5.2879 -0.8060 15.6145 20 1 6.5439 -1.5699 15.4045 21 1 5.4653 0.1352 16.7494 22 1 4.1810 -1.7476 15.9202 23 6 2.6701 -0.0779 3.9228 24 6 2.3654 0.3546 2.6488 25 1 -0.3632 0.6734 0.7763 26 1 -0.3634 0.3356 -0.9712 27 1 -0.3633 -1.0090 0.1952 28 1 2.2426 -2.6231 1.0597 29 1 2.7965 -3.4164 3.3208 30 1 2.8549 -2.2315 8.1701 31 1 4.5890 -2.1008 7.7909 32 1 4.5692 0.2694 8.5200 33 1 2.8350 0.1381 8.8991 34 1 3.3318 -1.6435 10.5512 35 1 5.0657 -1.5117 10.1716 36 1 4.9363 1.9361 14.9479 37 1 2.7860 0.6372 4.7239 38 1 2.2430 1.4096 2.4528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805347139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:04 Heat of formation + Delta-G solvation = -109.263361 kcal Electronic energy + Delta-G solvation = -21290.741741 eV Core-core repulsion = 17736.981315 eV Total energy + Delta-G solvation = -3553.760426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78051 -39.11066 -36.77338 -36.24083 -33.61436 -32.46404 -31.96550 -31.51267 -29.32509 -26.91084 -25.57291 -24.55206 -23.20809 -21.44089 -21.21632 -18.73734 -18.23764 -17.45181 -17.24755 -16.70066 -16.61093 -15.60322 -15.33781 -15.10241 -14.83602 -14.74887 -14.54248 -14.21032 -13.89911 -13.78761 -13.38447 -13.26468 -12.94198 -12.72669 -12.68130 -12.33345 -12.14859 -11.68531 -11.38305 -11.18472 -11.01879 -10.99981 -10.88038 -10.72820 -10.63278 -10.35762 -9.79790 -9.67080 -9.50951 -9.08684 -8.93935 -8.38669 -6.58855 -6.26322 -3.97865 -0.07091 0.85691 1.24928 1.99319 2.29886 2.39573 3.19887 3.20643 3.21720 3.26320 3.41136 3.50557 4.18235 4.26974 4.40966 4.45688 4.65643 4.72485 4.83660 4.94717 5.05372 5.10229 5.11711 5.16622 5.33163 5.42029 5.45216 5.47661 5.58239 5.70160 5.72841 5.78532 5.89732 6.09765 6.29620 6.32063 6.40569 6.62255 7.52738 7.56991 8.32800 9.19798 10.81761 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.034231 B = 0.001680 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.763944 B =16662.102438 C =17278.182563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.334 4.666 3 O -0.852 6.852 4 C -0.436 4.436 5 C -0.057 4.057 6 C -0.074 4.074 7 C -0.086 4.086 8 C 0.503 3.497 9 O -0.502 6.502 10 O -0.349 6.349 11 C 0.073 3.927 12 C -0.098 4.098 13 C -0.115 4.115 14 S -0.123 6.123 15 C -0.520 4.520 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.869 5.869 19 Si 0.920 3.080 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.274 1.274 23 C -0.075 4.075 24 C -0.067 4.067 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.269 0.731 37 H 0.145 0.855 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.860 -8.133 -32.080 34.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.531 4.469 3 O -0.847 6.847 4 C -0.532 4.532 5 C -0.076 4.076 6 C -0.093 4.093 7 C -0.088 4.088 8 C 0.347 3.653 9 O -0.391 6.391 10 O -0.266 6.266 11 C -0.001 4.001 12 C -0.137 4.137 13 C -0.263 4.263 14 S 0.105 5.895 15 C -0.668 4.668 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.505 5.505 19 Si 0.746 3.254 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.095 4.095 24 C -0.086 4.086 25 H 0.103 0.897 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.165 0.835 29 H 0.163 0.837 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.163 0.837 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.303 -6.905 -32.699 34.208 hybrid contribution -0.449 -0.753 3.179 3.298 sum -7.752 -7.657 -29.519 31.466 Atomic orbital electron populations 1.27757 1.21916 1.08222 1.07594 1.69629 0.86265 0.99753 0.91291 1.93142 1.73189 1.37169 1.81228 1.28047 1.08739 0.99719 1.16658 1.20803 0.96405 0.93681 0.96756 1.21425 0.95964 1.00262 0.91684 1.19429 1.03756 0.94725 0.90867 1.21132 0.74022 0.84410 0.85698 1.90840 1.46618 1.17515 1.84105 1.86525 1.80303 1.40138 1.19587 1.23344 1.01358 0.97685 0.77752 1.21297 1.03868 0.96590 0.91910 1.23180 1.02977 1.03394 0.96772 1.84664 1.92248 1.09535 1.03043 1.22656 1.55403 0.94834 0.93899 0.90866 1.25020 0.94751 0.95164 0.98802 1.70005 1.46352 1.06762 1.27348 0.86198 0.79067 0.79321 0.80798 1.19895 1.20774 1.19903 1.21673 0.95226 0.94820 0.97753 1.21160 0.95439 1.00094 0.91896 0.89741 0.87403 0.86858 0.83511 0.83743 0.90928 0.90892 0.90276 0.90304 0.91694 0.91676 0.92167 0.83744 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -1.70 10.70 101.05 1.08 -0.62 16 2 S 1.33 5.58 14.18 -107.50 -1.52 4.05 16 3 O -0.85 -9.52 16.88 -35.23 -0.59 -10.11 16 4 C -0.44 -2.91 5.62 -39.49 -0.22 -3.14 16 5 C -0.06 -0.30 9.73 -39.64 -0.39 -0.68 16 6 C -0.07 -0.60 9.60 -39.17 -0.38 -0.98 16 7 C -0.09 -0.93 5.87 -104.98 -0.62 -1.55 16 8 C 0.50 6.74 7.90 34.61 0.27 7.01 16 9 O -0.50 -7.69 16.14 -19.24 -0.31 -8.00 16 10 O -0.35 -4.89 9.47 -40.53 -0.38 -5.27 16 11 C 0.07 1.06 5.48 37.16 0.20 1.26 16 12 C -0.10 -1.60 5.60 -26.73 -0.15 -1.75 16 13 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 14 S -0.12 -3.20 21.44 -107.50 -2.30 -5.50 16 15 C -0.52 -14.86 9.50 30.94 0.29 -14.57 16 16 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 17 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 18 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 19 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.08 -0.77 9.62 -39.17 -0.38 -1.14 16 24 C -0.07 -0.63 9.42 -39.64 -0.37 -1.00 16 25 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.11 0.14 8.14 -51.92 -0.42 -0.28 16 28 H 0.15 0.05 8.06 -52.49 -0.42 -0.37 16 29 H 0.14 1.04 7.65 -52.49 -0.40 0.64 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.14 1.41 7.61 -52.48 -0.40 1.01 16 38 H 0.14 1.34 7.44 -52.49 -0.39 0.95 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -38.49 362.54 -9.44 -47.93 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.96 Total: -2.58 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -0.53 Total: -17.27 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.73 Total: -25.18 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.29 Total: -23.39 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -3.83 Total: -1.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.49 -9.44 -47.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805347139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.334 kcal (2) G-P(sol) polarization free energy of solvation -38.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds