Wall clock time and date at job start Tue Mar 31 2020 15:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42100 * 109.47244 * 2 1 4 4 C 1.76200 * 103.00292 * 109.05907 * 2 1 3 5 5 C 1.38366 * 119.84697 * 90.00052 * 4 2 1 6 6 C 1.37947 * 120.14940 * 179.97438 * 5 4 2 7 7 C 1.39638 * 119.84632 * 0.02562 * 6 5 4 8 8 C 1.47726 * 120.14673 * 180.02562 * 7 6 5 9 9 O 1.21462 * 120.00112 * 359.97438 * 8 7 6 10 10 O 1.34713 * 119.99369 * 179.97438 * 8 7 6 11 11 C 1.45208 * 116.99431 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46664 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46810 * 180.02562 * 12 11 10 14 14 S 1.81003 * 109.46989 * 179.97438 * 13 12 11 15 15 C 1.76204 * 99.99886 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99931 * 359.97438 * 15 14 13 17 17 C 1.38800 * 119.99738 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00340 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99659 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47461 * 59.99651 * 19 17 15 21 21 H 1.48502 * 109.47255 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47180 * 299.99347 * 19 17 15 23 23 C 1.39621 * 119.69962 * 0.27203 * 7 6 5 24 24 C 1.37952 * 119.84789 * 359.42616 * 23 7 6 25 25 H 1.09003 * 109.46597 * 310.94007 * 1 2 3 26 26 H 1.08993 * 109.47775 * 70.93883 * 1 2 3 27 27 H 1.08999 * 109.46963 * 190.94766 * 1 2 3 28 28 H 1.07993 * 119.92708 * 359.97269 * 5 4 2 29 29 H 1.07995 * 120.07944 * 179.97438 * 6 5 4 30 30 H 1.08995 * 109.46854 * 300.00134 * 11 10 8 31 31 H 1.08994 * 109.47061 * 60.00296 * 11 10 8 32 32 H 1.09006 * 109.46715 * 299.99572 * 12 11 10 33 33 H 1.08994 * 109.47596 * 60.00066 * 12 11 10 34 34 H 1.08998 * 109.47065 * 299.99458 * 13 12 11 35 35 H 1.08994 * 109.47204 * 59.99560 * 13 12 11 36 36 H 0.96997 * 120.00220 * 180.02562 * 18 17 15 37 37 H 1.08004 * 120.07573 * 179.70361 * 23 7 6 38 38 H 1.07998 * 119.92402 * 180.29633 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3654 -1.9140 1.8650 6 6 2.6762 -2.3598 3.1329 7 6 2.8340 -1.4416 4.1731 8 6 3.1675 -1.9116 5.5333 9 8 3.3046 -3.0991 5.7490 10 8 3.3196 -1.0231 6.5344 11 6 3.6464 -1.5563 7.8449 12 6 3.7778 -0.4060 8.8451 13 6 4.1228 -0.9678 10.2259 14 16 4.2790 0.3931 11.4090 15 6 4.6667 -0.5139 12.8691 16 1 4.7394 -1.5908 12.8325 17 6 4.8776 0.1556 14.0665 18 7 4.7885 1.4682 14.1112 19 14 5.2879 -0.8060 15.6145 20 1 6.5439 -1.5699 15.4045 21 1 5.4653 0.1352 16.7494 22 1 4.1810 -1.7476 15.9202 23 6 2.6701 -0.0779 3.9228 24 6 2.3654 0.3546 2.6488 25 1 -0.3632 0.6734 0.7763 26 1 -0.3634 0.3356 -0.9712 27 1 -0.3633 -1.0090 0.1952 28 1 2.2426 -2.6231 1.0597 29 1 2.7965 -3.4164 3.3208 30 1 2.8549 -2.2315 8.1701 31 1 4.5890 -2.1008 7.7909 32 1 4.5692 0.2694 8.5200 33 1 2.8350 0.1381 8.8991 34 1 3.3318 -1.6435 10.5512 35 1 5.0657 -1.5117 10.1716 36 1 4.9363 1.9361 14.9479 37 1 2.7860 0.6372 4.7239 38 1 2.2430 1.4096 2.4528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805347139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:03 Heat of formation + Delta-G solvation = -134.581635 kcal Electronic energy + Delta-G solvation = -21291.839623 eV Core-core repulsion = 17736.981315 eV Total energy + Delta-G solvation = -3554.858308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77705 -39.85353 -37.89613 -36.92548 -35.00455 -34.61288 -32.69338 -32.14492 -29.62581 -28.33932 -27.57172 -25.48647 -23.85434 -22.82286 -22.14877 -19.66743 -19.30392 -18.97541 -18.21307 -17.84789 -17.24936 -16.92027 -16.41548 -16.10935 -16.08777 -15.79688 -15.69823 -15.11649 -14.73176 -14.50298 -14.38218 -14.35098 -13.89621 -13.84452 -13.70288 -13.36478 -13.17985 -12.95333 -12.81141 -12.69521 -12.47685 -12.46941 -12.26545 -11.93462 -11.61340 -11.54087 -11.36715 -11.16320 -10.48036 -10.40146 -10.13088 -9.42207 -8.71872 -8.40321 -6.17775 -0.77070 0.23116 0.80367 1.20704 1.24555 1.36862 1.39761 1.48116 1.75970 1.78587 2.24745 2.54267 2.94161 2.94206 3.23617 3.41344 3.69681 3.77903 3.85449 3.90260 4.07598 4.24733 4.25954 4.27149 4.36449 4.44126 4.52600 4.56527 4.62222 4.88778 4.90588 4.94731 5.04481 5.07841 5.19127 5.22033 5.28082 5.37083 5.69900 6.15033 6.47598 7.01781 8.68815 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.034231 B = 0.001680 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.763944 B =16662.102438 C =17278.182563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.409 4.591 3 O -0.923 6.923 4 C -0.436 4.436 5 C -0.036 4.036 6 C -0.075 4.075 7 C -0.111 4.111 8 C 0.504 3.496 9 O -0.525 6.525 10 O -0.355 6.355 11 C 0.081 3.919 12 C -0.087 4.087 13 C -0.091 4.091 14 S -0.187 6.187 15 C -0.542 4.542 16 H 0.075 0.925 17 C 0.016 3.984 18 N -0.907 5.907 19 Si 0.995 3.005 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.264 1.264 23 C -0.088 4.088 24 C -0.089 4.089 25 H 0.061 0.939 26 H 0.123 0.877 27 H 0.146 0.854 28 H 0.209 0.791 29 H 0.156 0.844 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.272 0.728 37 H 0.135 0.865 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.566 -10.749 -34.098 36.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.606 4.394 3 O -0.919 6.919 4 C -0.530 4.530 5 C -0.054 4.054 6 C -0.094 4.094 7 C -0.112 4.112 8 C 0.350 3.650 9 O -0.416 6.416 10 O -0.271 6.271 11 C 0.006 3.994 12 C -0.125 4.125 13 C -0.240 4.240 14 S 0.041 5.959 15 C -0.690 4.690 16 H 0.094 0.906 17 C -0.190 4.190 18 N -0.543 5.543 19 Si 0.817 3.183 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.189 1.189 23 C -0.107 4.107 24 C -0.108 4.108 25 H 0.080 0.920 26 H 0.141 0.859 27 H 0.164 0.836 28 H 0.226 0.774 29 H 0.174 0.826 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.153 0.847 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.996 -9.513 -34.722 36.879 hybrid contribution -0.335 0.036 3.602 3.618 sum -8.331 -9.477 -31.119 33.580 Atomic orbital electron populations 1.27772 1.20282 1.09832 1.07756 1.68784 0.85938 0.96519 0.88173 1.93016 1.75864 1.40894 1.82100 1.28467 1.07423 1.00241 1.16887 1.21463 0.93093 0.93790 0.97062 1.21763 0.95198 1.00394 0.92040 1.19457 1.06233 0.95384 0.90128 1.21632 0.73132 0.84015 0.86238 1.90816 1.48057 1.18231 1.84486 1.86520 1.80474 1.40590 1.19562 1.23108 1.01902 0.96532 0.77882 1.21110 1.03740 0.97145 0.90528 1.23058 1.03494 1.00860 0.96577 1.84667 1.92443 1.13837 1.04907 1.23031 1.55759 0.95155 0.95030 0.90645 1.26085 0.94224 0.96207 1.02440 1.70142 1.47183 1.08560 1.28428 0.85047 0.79204 0.77907 0.76144 1.18904 1.19947 1.18885 1.21589 0.96339 0.94741 0.98060 1.21164 0.96993 1.00145 0.92514 0.91984 0.85882 0.83599 0.77428 0.82611 0.90372 0.90413 0.90385 0.90335 0.91137 0.91166 0.91883 0.84746 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -1.85 10.70 113.37 1.21 -0.64 16 2 S 1.41 8.45 14.18 -56.49 -0.80 7.65 16 3 O -0.92 -20.33 16.88 -148.98 -2.52 -22.85 16 4 C -0.44 -4.90 5.62 22.33 0.13 -4.77 16 5 C -0.04 -0.23 9.73 22.23 0.22 -0.01 16 6 C -0.07 -1.03 9.60 22.54 0.22 -0.82 16 7 C -0.11 -2.34 5.87 -20.10 -0.12 -2.46 16 8 C 0.50 13.49 7.90 70.33 0.56 14.04 16 9 O -0.53 -15.86 16.14 19.96 0.32 -15.54 16 10 O -0.36 -10.05 9.47 -56.23 -0.53 -10.59 16 11 C 0.08 2.31 5.48 71.98 0.39 2.70 16 12 C -0.09 -2.83 5.60 30.59 0.17 -2.66 16 13 C -0.09 -3.63 5.67 71.98 0.41 -3.22 16 14 S -0.19 -9.98 21.44 -56.49 -1.21 -11.19 16 15 C -0.54 -31.35 9.50 67.95 0.65 -30.71 16 16 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 17 C 0.02 0.89 5.49 84.86 0.47 1.35 16 18 N -0.91 -54.92 13.22 21.65 0.29 -54.64 16 19 Si 1.00 43.99 29.55 68.60 2.03 46.01 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 23 C -0.09 -1.86 9.62 22.54 0.22 -1.64 16 24 C -0.09 -1.69 9.42 22.23 0.21 -1.48 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.21 -1.26 8.06 -2.91 -0.02 -1.28 16 29 H 0.16 1.80 7.65 -2.91 -0.02 1.78 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.07 2.73 8.14 -2.40 -0.02 2.71 16 35 H 0.07 2.73 8.14 -2.40 -0.02 2.71 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.13 2.92 7.61 -2.91 -0.02 2.90 16 38 H 0.12 2.60 7.44 -2.91 -0.02 2.57 16 Total: -1.00 -86.91 362.54 3.36 -83.56 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.06 Total: 7.89 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 4.72 Total: -30.31 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.29 Total: -54.64 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -2.73 Total: -48.97 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.01 Total: -3.53 kcal Total: -86.91 3.36 -83.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805347139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.026 kcal (2) G-P(sol) polarization free energy of solvation -86.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds