Wall clock time and date at job start Tue Mar 31 2020 15:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86793 * 120.00000 * 2 1 4 4 H 1.48496 * 109.47430 * 240.00559 * 3 2 1 5 5 H 1.48506 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47200 * 120.00484 * 3 2 1 7 7 C 1.38794 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99930 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00314 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00094 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47161 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47357 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47612 * 179.97438 * 12 11 10 14 14 C 1.34228 * 117.00479 * 179.97438 * 13 12 11 15 15 O 1.20825 * 119.99501 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00238 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47140 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47142 * 180.02562 * 17 16 14 19 19 C 1.38270 * 119.99101 * 270.27596 * 18 17 16 20 20 C 1.38215 * 120.02537 * 180.27948 * 19 18 17 21 21 C 1.38238 * 120.01126 * 359.44038 * 20 19 18 22 22 C 1.38325 * 119.98878 * 0.28199 * 21 20 19 23 23 Cl 1.73606 * 120.01335 * 179.97438 * 22 21 20 24 24 C 1.38193 * 119.99765 * 89.99998 * 18 17 16 25 25 H 0.97004 * 119.99907 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46839 * 60.00134 * 10 9 7 27 27 H 1.08994 * 109.47385 * 300.00461 * 10 9 7 28 28 H 1.09006 * 109.47208 * 60.00270 * 11 10 9 29 29 H 1.09003 * 109.47385 * 300.00180 * 11 10 9 30 30 H 1.09006 * 109.46881 * 59.99898 * 12 11 10 31 31 H 1.08999 * 109.47568 * 300.00535 * 12 11 10 32 32 H 1.09004 * 109.46471 * 60.00514 * 16 14 13 33 33 H 1.08998 * 109.47585 * 300.00696 * 16 14 13 34 34 H 1.08998 * 109.47471 * 60.00114 * 17 16 14 35 35 H 1.09000 * 109.47154 * 299.99976 * 17 16 14 36 36 H 1.07997 * 119.98420 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.99636 * 179.72646 * 20 19 18 38 38 H 1.07999 * 120.00577 * 180.25936 * 21 20 19 39 39 H 1.08003 * 120.00423 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9792 -5.3242 -0.0030 12 6 3.1512 -6.3078 -0.0037 13 8 2.6421 -7.6675 -0.0039 14 6 3.5484 -8.6577 -0.0051 15 8 4.7281 -8.3967 -0.0054 16 6 3.0945 -10.0947 -0.0048 17 6 4.3163 -11.0154 -0.0056 18 6 3.8624 -12.4525 -0.0060 19 6 3.6493 -13.1103 1.1914 20 6 3.2385 -14.4300 1.1920 21 6 3.0295 -15.0895 -0.0048 22 6 3.2370 -14.4303 -1.2030 23 17 2.9753 -15.2582 -2.7063 24 6 3.6538 -13.1109 -1.2029 25 1 -0.4850 0.8401 0.0004 26 1 3.1251 -3.7317 0.8875 27 1 3.1238 -3.7310 -0.8924 28 1 1.3702 -5.4836 -0.8929 29 1 1.3710 -5.4850 0.8871 30 1 3.7599 -6.1482 0.8864 31 1 3.7599 -6.1472 -0.8935 32 1 2.4942 -10.2861 -0.8942 33 1 2.4959 -10.2865 0.8857 34 1 4.9164 -10.8238 0.8839 35 1 4.9151 -10.8237 -0.8960 36 1 3.8077 -12.5938 2.1266 37 1 3.0764 -14.9446 2.1276 38 1 2.7045 -16.1195 -0.0042 39 1 3.8165 -12.5957 -2.1381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805385042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:38 Heat of formation + Delta-G solvation = -99.563687 kcal Electronic energy + Delta-G solvation = -20928.522077 eV Core-core repulsion = 17373.138554 eV Total energy + Delta-G solvation = -3555.383523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.64642 -39.84584 -37.08290 -36.80754 -34.51225 -33.51294 -32.45519 -31.26404 -30.44172 -26.92801 -25.64057 -24.98185 -23.19176 -21.92744 -21.35619 -20.68404 -18.02117 -17.46805 -17.19679 -16.95427 -16.52192 -16.11582 -15.83094 -15.00380 -14.83084 -14.47217 -14.31025 -14.05404 -13.81179 -13.68993 -13.28968 -12.96419 -12.68115 -12.53130 -12.13470 -12.08642 -11.92601 -11.78250 -11.44464 -11.35814 -11.26982 -11.15083 -10.99646 -10.95135 -10.71468 -10.57994 -10.31044 -9.65992 -9.41508 -9.16528 -9.08106 -8.37713 -6.57997 -6.25820 -3.97179 0.63849 0.73350 1.66547 2.07895 2.51834 3.11165 3.21127 3.22105 3.26726 3.52457 4.14673 4.19147 4.28204 4.45443 4.53676 4.61347 4.69913 4.84554 4.88783 5.06668 5.08773 5.11113 5.13265 5.16340 5.35779 5.37938 5.42250 5.46726 5.64498 5.71365 5.75280 5.81842 5.88149 6.01109 6.14584 6.28034 6.42573 6.42838 6.65397 7.57533 7.64600 8.33350 9.20391 10.82255 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.033131 B = 0.001462 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.930301 B =19150.377295 C =19380.667424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.355 6.355 14 C 0.459 3.541 15 O -0.512 6.512 16 C -0.110 4.110 17 C -0.070 4.070 18 C -0.069 4.069 19 C -0.110 4.110 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.032 4.032 23 Cl -0.071 7.071 24 C -0.106 4.106 25 H 0.268 0.732 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -31.751 0.449 32.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.272 6.272 14 C 0.302 3.698 15 O -0.400 6.400 16 C -0.147 4.147 17 C -0.108 4.108 18 C -0.069 4.069 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.133 4.133 22 C -0.059 4.059 23 Cl -0.042 7.042 24 C -0.125 4.125 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.511 -31.760 0.309 32.236 hybrid contribution 1.938 1.277 -0.159 2.326 sum 7.448 -30.483 0.150 31.380 Atomic orbital electron populations 1.70012 1.05924 1.27532 1.47005 1.25014 0.95100 0.99115 0.94490 0.86202 0.79222 0.81095 0.78881 1.19908 1.20778 1.19911 1.22659 0.94568 0.90708 1.58863 0.90888 1.84650 1.08766 0.99208 1.96890 1.23183 1.03451 0.96375 1.03331 1.21286 0.96455 0.91582 1.04316 1.23278 0.97753 0.76632 1.02587 1.86482 1.40370 1.17020 1.83328 1.23615 0.84723 0.88892 0.72524 1.90678 1.18681 1.85177 1.45469 1.21369 0.99872 0.87037 1.06448 1.20433 0.96384 0.88621 1.05339 1.19777 0.98781 0.95850 0.92542 1.21236 0.98809 0.94744 0.98010 1.21143 0.98723 0.94673 0.97727 1.21094 1.00743 1.00638 0.90844 1.20940 1.03917 0.93662 0.87369 1.98387 1.95068 1.78470 1.32274 1.21011 0.99766 0.92755 0.98942 0.92184 0.91740 0.91742 0.90342 0.90354 0.91153 0.91145 0.87385 0.87356 0.89403 0.89533 0.85097 0.84905 0.84963 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.76 13.22 55.49 0.73 -25.03 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -14.80 9.50 30.94 0.29 -14.50 16 8 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 9 S -0.12 -3.18 21.44 -107.50 -2.30 -5.49 16 10 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 11 C -0.10 -1.57 5.60 -26.73 -0.15 -1.72 16 12 C 0.07 1.02 5.47 37.16 0.20 1.22 16 13 O -0.36 -4.65 10.22 -39.25 -0.40 -5.05 16 14 C 0.46 5.30 7.96 36.00 0.29 5.59 16 15 O -0.51 -7.29 15.73 -18.75 -0.29 -7.58 16 16 C -0.11 -0.80 5.79 -27.89 -0.16 -0.96 16 17 C -0.07 -0.48 4.63 -27.88 -0.13 -0.61 16 18 C -0.07 -0.45 5.13 -104.63 -0.54 -0.98 16 19 C -0.11 -0.62 9.70 -39.58 -0.38 -1.01 16 20 C -0.10 -0.55 10.05 -39.59 -0.40 -0.95 16 21 C -0.11 -0.69 9.83 -39.55 -0.39 -1.08 16 22 C -0.03 -0.23 6.32 -39.50 -0.25 -0.48 16 23 Cl -0.07 -0.52 28.96 -51.86 -1.50 -2.02 16 24 C -0.11 -0.73 9.49 -39.55 -0.38 -1.11 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 27 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 32 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.61 8.05 -51.93 -0.42 0.20 16 35 H 0.09 0.63 8.04 -51.93 -0.42 0.22 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -32.44 370.62 -10.53 -42.97 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.45 Total: -3.05 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -1.87 Total: -16.71 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.73 Total: -25.03 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.70 Total: -12.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.49 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.44 -10.53 -42.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805385042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.592 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds