Wall clock time and date at job start Tue Mar 31 2020 15:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86793 * 120.00000 * 2 1 4 4 H 1.48496 * 109.47430 * 240.00559 * 3 2 1 5 5 H 1.48506 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47200 * 120.00484 * 3 2 1 7 7 C 1.38794 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99930 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00314 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00094 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47161 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47357 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47612 * 179.97438 * 12 11 10 14 14 C 1.34228 * 117.00479 * 179.97438 * 13 12 11 15 15 O 1.20825 * 119.99501 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00238 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47140 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47142 * 180.02562 * 17 16 14 19 19 C 1.38270 * 119.99101 * 270.27596 * 18 17 16 20 20 C 1.38215 * 120.02537 * 180.27948 * 19 18 17 21 21 C 1.38238 * 120.01126 * 359.44038 * 20 19 18 22 22 C 1.38325 * 119.98878 * 0.28199 * 21 20 19 23 23 Cl 1.73606 * 120.01335 * 179.97438 * 22 21 20 24 24 C 1.38193 * 119.99765 * 89.99998 * 18 17 16 25 25 H 0.97004 * 119.99907 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46839 * 60.00134 * 10 9 7 27 27 H 1.08994 * 109.47385 * 300.00461 * 10 9 7 28 28 H 1.09006 * 109.47208 * 60.00270 * 11 10 9 29 29 H 1.09003 * 109.47385 * 300.00180 * 11 10 9 30 30 H 1.09006 * 109.46881 * 59.99898 * 12 11 10 31 31 H 1.08999 * 109.47568 * 300.00535 * 12 11 10 32 32 H 1.09004 * 109.46471 * 60.00514 * 16 14 13 33 33 H 1.08998 * 109.47585 * 300.00696 * 16 14 13 34 34 H 1.08998 * 109.47471 * 60.00114 * 17 16 14 35 35 H 1.09000 * 109.47154 * 299.99976 * 17 16 14 36 36 H 1.07997 * 119.98420 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.99636 * 179.72646 * 20 19 18 38 38 H 1.07999 * 120.00577 * 180.25936 * 21 20 19 39 39 H 1.08003 * 120.00423 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9792 -5.3242 -0.0030 12 6 3.1512 -6.3078 -0.0037 13 8 2.6421 -7.6675 -0.0039 14 6 3.5484 -8.6577 -0.0051 15 8 4.7281 -8.3967 -0.0054 16 6 3.0945 -10.0947 -0.0048 17 6 4.3163 -11.0154 -0.0056 18 6 3.8624 -12.4525 -0.0060 19 6 3.6493 -13.1103 1.1914 20 6 3.2385 -14.4300 1.1920 21 6 3.0295 -15.0895 -0.0048 22 6 3.2370 -14.4303 -1.2030 23 17 2.9753 -15.2582 -2.7063 24 6 3.6538 -13.1109 -1.2029 25 1 -0.4850 0.8401 0.0004 26 1 3.1251 -3.7317 0.8875 27 1 3.1238 -3.7310 -0.8924 28 1 1.3702 -5.4836 -0.8929 29 1 1.3710 -5.4850 0.8871 30 1 3.7599 -6.1482 0.8864 31 1 3.7599 -6.1472 -0.8935 32 1 2.4942 -10.2861 -0.8942 33 1 2.4959 -10.2865 0.8857 34 1 4.9164 -10.8238 0.8839 35 1 4.9151 -10.8237 -0.8960 36 1 3.8077 -12.5938 2.1266 37 1 3.0764 -14.9446 2.1276 38 1 2.7045 -16.1195 -0.0042 39 1 3.8165 -12.5957 -2.1381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805385042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:38 Heat of formation + Delta-G solvation = -114.733263 kcal Electronic energy + Delta-G solvation = -20929.179879 eV Core-core repulsion = 17373.138554 eV Total energy + Delta-G solvation = -3556.041325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58005 -40.34672 -37.97960 -37.45695 -35.12543 -34.85301 -34.57808 -31.70570 -31.01560 -28.26388 -27.53543 -25.84996 -23.62728 -22.83254 -22.44653 -21.44478 -19.58405 -18.79288 -17.91675 -17.82274 -17.43289 -16.89826 -16.71694 -16.33454 -16.08981 -16.06327 -15.02041 -14.86702 -14.61871 -14.57080 -14.24443 -13.99136 -13.79310 -13.76283 -13.34224 -13.07631 -12.93387 -12.64530 -12.58310 -12.39982 -12.39372 -12.37364 -12.27212 -11.96844 -11.78861 -11.69455 -11.49926 -11.39622 -11.14198 -10.36886 -9.87129 -9.63508 -8.68511 -8.38189 -6.15009 0.18003 0.28763 1.16779 1.17083 1.28320 1.41153 1.44628 1.53222 1.87790 2.27156 2.66171 2.96324 3.27875 3.51031 3.82770 3.84420 3.86712 3.99004 4.04003 4.06393 4.17252 4.21442 4.32544 4.34509 4.45128 4.50857 4.61612 4.66130 4.68333 4.90914 4.96052 5.01583 5.11042 5.14897 5.27352 5.39236 5.40391 5.48861 5.55752 5.86607 6.17161 6.69937 7.04141 8.70854 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.033131 B = 0.001462 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.930301 B =19150.377295 C =19380.667424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.017 3.983 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.074 0.926 9 S -0.185 6.185 10 C -0.092 4.092 11 C -0.086 4.086 12 C 0.080 3.920 13 O -0.360 6.360 14 C 0.459 3.541 15 O -0.541 6.541 16 C -0.101 4.101 17 C -0.064 4.064 18 C -0.073 4.073 19 C -0.112 4.112 20 C -0.104 4.104 21 C -0.120 4.120 22 C -0.047 4.047 23 Cl -0.080 7.080 24 C -0.117 4.117 25 H 0.272 0.728 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.144 0.856 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.255 -32.587 1.176 33.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.691 4.691 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.241 4.241 11 C -0.125 4.125 12 C 0.005 3.995 13 O -0.276 6.276 14 C 0.304 3.696 15 O -0.431 6.431 16 C -0.138 4.138 17 C -0.101 4.101 18 C -0.073 4.073 19 C -0.130 4.130 20 C -0.122 4.122 21 C -0.139 4.139 22 C -0.074 4.074 23 Cl -0.051 7.051 24 C -0.135 4.135 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.162 0.838 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.278 -32.618 1.035 33.233 hybrid contribution 1.714 1.406 -0.368 2.247 sum 7.992 -31.212 0.667 32.226 Atomic orbital electron populations 1.70141 1.07640 1.28687 1.47758 1.26052 0.96037 1.03068 0.93671 0.85070 0.77941 0.76103 0.79332 1.18991 1.19928 1.18949 1.23036 0.94866 0.92000 1.59182 0.90776 1.84621 1.13106 1.00803 1.97069 1.23076 1.00780 0.96636 1.03632 1.21106 0.97115 0.89830 1.04433 1.22997 0.96472 0.77188 1.02870 1.86481 1.40889 1.16688 1.83572 1.24444 0.84148 0.89795 0.71167 1.90670 1.19899 1.85612 1.46914 1.21492 1.00374 0.83843 1.08128 1.20347 0.96060 0.88835 1.04895 1.19731 0.99285 0.95539 0.92782 1.21501 0.98107 0.95048 0.98357 1.21446 0.97799 0.94598 0.98370 1.21343 1.00423 1.01328 0.90783 1.21089 1.04856 0.93933 0.87474 1.98380 1.95172 1.78609 1.32915 1.21109 1.00143 0.92930 0.99356 0.91891 0.91324 0.91410 0.90318 0.90214 0.90841 0.90986 0.85875 0.85229 0.89537 0.90398 0.83403 0.82558 0.83795 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.24 13.22 21.65 0.29 -53.95 16 2 C 0.02 0.96 5.49 84.86 0.47 1.42 16 3 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -31.12 9.50 67.95 0.65 -30.47 16 8 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 9 S -0.18 -9.67 21.44 -56.49 -1.21 -10.88 16 10 C -0.09 -3.61 5.67 71.98 0.41 -3.20 16 11 C -0.09 -2.69 5.60 30.59 0.17 -2.52 16 12 C 0.08 2.15 5.47 71.98 0.39 2.55 16 13 O -0.36 -8.83 10.22 -51.40 -0.53 -9.36 16 14 C 0.46 9.91 7.96 71.24 0.57 10.47 16 15 O -0.54 -14.88 15.73 21.97 0.35 -14.53 16 16 C -0.10 -1.26 5.79 29.85 0.17 -1.08 16 17 C -0.06 -0.78 4.63 29.85 0.14 -0.64 16 18 C -0.07 -0.82 5.13 -19.87 -0.10 -0.93 16 19 C -0.11 -1.01 9.70 22.27 0.22 -0.79 16 20 C -0.10 -0.85 10.05 22.26 0.22 -0.62 16 21 C -0.12 -1.26 9.83 22.29 0.22 -1.04 16 22 C -0.05 -0.63 6.32 22.32 0.14 -0.48 16 23 Cl -0.08 -1.13 28.96 -2.72 -0.08 -1.20 16 24 C -0.12 -1.50 9.49 22.29 0.21 -1.29 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 28 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 1.94 8.13 -2.38 -0.02 1.92 16 31 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 32 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.08 8.05 -2.39 -0.02 1.06 16 35 H 0.08 1.08 8.04 -2.39 -0.02 1.06 16 36 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 37 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 38 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -69.89 370.62 5.76 -64.13 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.04 Total: 8.82 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 3.87 Total: -28.63 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.29 Total: -53.95 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.18 Total: -23.89 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.21 Total: -10.88 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -69.89 5.76 -64.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805385042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.603 kcal (2) G-P(sol) polarization free energy of solvation -69.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds