Wall clock time and date at job start Tue Mar 31 2020 15:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.76205 * 103.00275 * 2 1 4 4 C 1.38918 * 120.02262 * 0.25279 * 3 2 1 5 5 C 1.38085 * 119.97718 * 180.25627 * 4 3 2 6 6 C 1.38716 * 120.02147 * 359.48783 * 5 4 3 7 7 O 1.36008 * 119.97557 * 180.27928 * 6 5 4 8 8 C 1.42898 * 116.99733 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46940 * 179.97438 * 8 7 6 10 10 O 1.45203 * 109.46659 * 64.99960 * 9 8 7 11 11 C 1.34239 * 116.99475 * 180.02562 * 10 9 8 12 12 O 1.20825 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99360 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.46547 * 179.97438 * 13 11 10 15 15 C 1.76203 * 100.00025 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99837 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00055 * 180.02562 * 15 14 13 18 18 N 1.31634 * 119.99854 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00184 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46926 * 90.00072 * 19 17 15 21 21 H 1.48501 * 109.47310 * 210.00044 * 19 17 15 22 22 H 1.48501 * 109.47280 * 330.00262 * 19 17 15 23 23 C 1.38713 * 120.05014 * 0.25614 * 6 5 4 24 24 C 1.38091 * 120.02280 * 0.02562 * 23 6 5 25 25 H 1.09001 * 109.47438 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47579 * 300.00375 * 1 2 3 27 27 H 1.09007 * 109.47416 * 60.00068 * 1 2 3 28 28 H 1.08004 * 120.01476 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.99329 * 179.77220 * 5 4 3 30 30 H 1.08996 * 109.47479 * 299.99592 * 8 7 6 31 31 H 1.09004 * 109.47400 * 60.00451 * 8 7 6 32 32 H 1.08992 * 109.47154 * 185.00313 * 9 8 7 33 33 H 1.08999 * 109.47213 * 305.00510 * 9 8 7 34 34 H 1.08999 * 109.47223 * 299.99203 * 13 11 10 35 35 H 1.08995 * 109.47568 * 60.00363 * 13 11 10 36 36 H 0.97006 * 119.99611 * 179.97438 * 18 17 15 37 37 H 1.08004 * 119.98875 * 180.02562 * 23 6 5 38 38 H 1.07999 * 120.00834 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1948 2.6647 0.0053 5 6 1.5065 4.0099 0.0000 6 6 2.8333 4.4149 0.0000 7 8 3.1392 5.7401 0.0005 8 6 4.5258 6.0857 -0.0001 9 6 4.6717 7.6088 -0.0001 10 8 4.1424 8.1457 1.2409 11 6 4.1949 9.4775 1.4001 12 8 4.6671 10.1717 0.5312 13 6 3.6650 10.1068 2.6627 14 16 3.8770 11.9023 2.5768 15 6 3.1931 12.3661 4.1330 16 1 2.8086 11.6094 4.8009 17 6 3.1485 13.7037 4.5006 18 7 2.6371 14.0501 5.6630 19 14 3.8142 15.0124 3.3458 20 1 2.7273 15.4797 2.4481 21 1 4.3278 16.1579 4.1391 22 1 4.9166 14.4401 2.5319 23 6 3.8482 3.4693 0.0001 24 6 3.5386 2.1236 -0.0004 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.1618 2.3497 0.0099 29 1 0.7172 4.7471 0.0004 30 1 5.0031 5.6747 0.8895 31 1 5.0022 5.6755 -0.8905 32 1 5.7253 7.8729 -0.0901 33 1 4.1192 8.0268 -0.8416 34 1 2.6063 9.8704 2.7699 35 1 4.2130 9.7173 3.5206 36 1 2.6063 14.9850 5.9200 37 1 4.8808 3.7858 0.0006 38 1 4.3290 1.3875 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805390938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:48 Heat of formation + Delta-G solvation = -99.133203 kcal Electronic energy + Delta-G solvation = -21419.451051 eV Core-core repulsion = 17866.129902 eV Total energy + Delta-G solvation = -3553.321149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56344 -40.04610 -37.84963 -36.25906 -32.50146 -31.91459 -31.57221 -30.24757 -29.31498 -29.09962 -25.70059 -24.31728 -23.02759 -22.14849 -21.11339 -18.83404 -18.01877 -17.82238 -17.41280 -16.62425 -16.39821 -15.95155 -15.54750 -15.21326 -15.10180 -14.99428 -14.29387 -14.12494 -14.06942 -13.91944 -13.65837 -13.32151 -13.15977 -12.88161 -12.73781 -12.31393 -12.21491 -12.05915 -11.53097 -11.37425 -11.31665 -11.06206 -10.75016 -10.66848 -10.64364 -10.21646 -9.89056 -9.50015 -9.42901 -9.06480 -8.63176 -7.60079 -7.03649 -6.34364 -4.08817 0.85661 0.92896 1.13361 2.00085 2.36402 2.49247 2.79220 3.06307 3.27945 3.28513 3.44281 3.50124 4.26573 4.28297 4.40711 4.50874 4.57516 4.58548 4.59218 4.69944 4.77743 4.84686 4.94054 5.03178 5.04408 5.09733 5.20063 5.25972 5.44080 5.55334 5.64609 5.66842 5.85785 5.92125 5.95014 6.23701 6.49220 7.03242 7.88445 7.98909 8.37372 9.10619 10.74636 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.027822 B = 0.001796 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.141827 B =15582.238569 C =16257.634084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.126 6.126 3 C -0.126 4.126 4 C -0.092 4.092 5 C -0.131 4.131 6 C 0.133 3.867 7 O -0.304 6.304 8 C 0.061 3.939 9 C 0.067 3.933 10 O -0.352 6.352 11 C 0.480 3.520 12 O -0.491 6.491 13 C -0.099 4.099 14 S -0.140 6.140 15 C -0.523 4.523 16 H 0.092 0.908 17 C 0.097 3.903 18 N -0.877 5.877 19 Si 0.857 3.143 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.236 1.236 23 C -0.192 4.192 24 C -0.057 4.057 25 H 0.107 0.893 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.130 0.870 29 H 0.137 0.863 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.272 0.728 37 H 0.134 0.866 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 -28.029 -13.359 31.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.115 5.885 3 C -0.238 4.238 4 C -0.115 4.115 5 C -0.151 4.151 6 C 0.085 3.915 7 O -0.217 6.217 8 C -0.014 4.014 9 C -0.007 4.007 10 O -0.270 6.270 11 C 0.321 3.679 12 O -0.377 6.377 13 C -0.247 4.247 14 S 0.086 5.914 15 C -0.670 4.670 16 H 0.110 0.890 17 C -0.112 4.112 18 N -0.513 5.513 19 Si 0.681 3.319 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.160 1.160 23 C -0.212 4.212 24 C -0.081 4.081 25 H 0.126 0.874 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.148 0.852 29 H 0.155 0.845 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.152 0.848 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.797 -27.930 -14.330 31.402 hybrid contribution -0.948 0.975 0.632 1.499 sum -0.150 -26.955 -13.698 30.237 Atomic orbital electron populations 1.23665 0.94654 1.07135 1.05750 1.85422 1.06585 1.03199 1.93303 1.21529 0.96547 0.96471 1.09234 1.20979 0.98435 0.91960 1.00138 1.20374 0.94221 0.95726 1.04824 1.19035 0.93841 0.82784 0.95803 1.86208 1.26647 1.20690 1.88180 1.22949 0.81302 0.94375 1.02787 1.23016 1.00377 0.91053 0.86273 1.86573 1.75813 1.24512 1.40130 1.23283 0.75819 0.79915 0.88844 1.90668 1.41443 1.62628 1.42921 1.23009 1.05373 1.01212 0.95138 1.84789 1.81983 0.96293 1.28339 1.22262 1.46453 0.96929 1.01353 0.89030 1.24699 0.93721 0.97838 0.94951 1.69936 1.42912 1.18324 1.20099 0.86742 0.81482 0.82049 0.81593 1.19122 1.19784 1.15989 1.21210 0.99082 0.92993 1.07959 1.20527 0.94376 0.95273 0.97893 0.87410 0.89643 0.89717 0.85188 0.84538 0.90440 0.89614 0.88780 0.89942 0.87098 0.87116 0.91813 0.84778 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 9.15 101.05 0.92 0.27 16 2 S -0.13 -0.95 22.56 -107.50 -2.43 -3.37 16 3 C -0.13 -1.11 6.11 -39.08 -0.24 -1.35 16 4 C -0.09 -0.78 9.36 -39.39 -0.37 -1.15 16 5 C -0.13 -1.26 9.98 -39.46 -0.39 -1.66 16 6 C 0.13 1.37 6.69 -39.23 -0.26 1.10 16 7 O -0.30 -3.44 10.11 -23.34 -0.24 -3.68 16 8 C 0.06 0.53 5.13 37.16 0.19 0.72 16 9 C 0.07 0.75 5.85 37.16 0.22 0.97 16 10 O -0.35 -5.28 10.19 -42.05 -0.43 -5.70 16 11 C 0.48 8.64 7.98 36.01 0.29 8.92 16 12 O -0.49 -9.97 15.61 -18.75 -0.29 -10.26 16 13 C -0.10 -1.94 6.27 36.01 0.23 -1.71 16 14 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 15 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 16 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 17 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -26.09 13.97 55.49 0.78 -25.31 16 19 Si 0.86 21.31 27.74 -169.99 -4.71 16.60 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 23 C -0.19 -1.66 9.03 -39.46 -0.36 -2.01 16 24 C -0.06 -0.49 9.79 -39.39 -0.39 -0.87 16 25 H 0.11 0.34 8.14 -51.92 -0.42 -0.09 16 26 H 0.08 0.36 7.73 -51.93 -0.40 -0.05 16 27 H 0.08 0.33 7.76 -51.92 -0.40 -0.07 16 28 H 0.13 0.82 5.87 -52.48 -0.31 0.51 16 29 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.08 0.60 7.66 -51.93 -0.40 0.21 16 31 H 0.09 0.50 7.66 -51.93 -0.40 0.10 16 32 H 0.09 0.91 8.13 -51.93 -0.42 0.48 16 33 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.11 2.04 8.14 -51.92 -0.42 1.62 16 35 H 0.11 2.00 8.14 -51.92 -0.42 1.58 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.13 0.86 6.29 -52.48 -0.33 0.53 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -33.40 356.65 -8.66 -42.06 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.77 Total: -1.67 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 0.05 Total: -8.57 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.78 Total: -25.31 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.96 Total: -19.65 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -4.42 Total: -8.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.40 -8.66 -42.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805390938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.076 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds