Wall clock time and date at job start Tue Mar 31 2020 15:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.76205 * 103.00275 * 2 1 4 4 C 1.38918 * 120.02262 * 0.25279 * 3 2 1 5 5 C 1.38085 * 119.97718 * 180.25627 * 4 3 2 6 6 C 1.38716 * 120.02147 * 359.48783 * 5 4 3 7 7 O 1.36008 * 119.97557 * 180.27928 * 6 5 4 8 8 C 1.42898 * 116.99733 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46940 * 179.97438 * 8 7 6 10 10 O 1.45203 * 109.46659 * 64.99960 * 9 8 7 11 11 C 1.34239 * 116.99475 * 180.02562 * 10 9 8 12 12 O 1.20825 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99360 * 180.02562 * 11 10 9 14 14 S 1.81004 * 109.46547 * 179.97438 * 13 11 10 15 15 C 1.76203 * 100.00025 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99837 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00055 * 180.02562 * 15 14 13 18 18 N 1.31634 * 119.99854 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00184 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46926 * 90.00072 * 19 17 15 21 21 H 1.48501 * 109.47310 * 210.00044 * 19 17 15 22 22 H 1.48501 * 109.47280 * 330.00262 * 19 17 15 23 23 C 1.38713 * 120.05014 * 0.25614 * 6 5 4 24 24 C 1.38091 * 120.02280 * 0.02562 * 23 6 5 25 25 H 1.09001 * 109.47438 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47579 * 300.00375 * 1 2 3 27 27 H 1.09007 * 109.47416 * 60.00068 * 1 2 3 28 28 H 1.08004 * 120.01476 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.99329 * 179.77220 * 5 4 3 30 30 H 1.08996 * 109.47479 * 299.99592 * 8 7 6 31 31 H 1.09004 * 109.47400 * 60.00451 * 8 7 6 32 32 H 1.08992 * 109.47154 * 185.00313 * 9 8 7 33 33 H 1.08999 * 109.47213 * 305.00510 * 9 8 7 34 34 H 1.08999 * 109.47223 * 299.99203 * 13 11 10 35 35 H 1.08995 * 109.47568 * 60.00363 * 13 11 10 36 36 H 0.97006 * 119.99611 * 179.97438 * 18 17 15 37 37 H 1.08004 * 119.98875 * 180.02562 * 23 6 5 38 38 H 1.07999 * 120.00834 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1948 2.6647 0.0053 5 6 1.5065 4.0099 0.0000 6 6 2.8333 4.4149 0.0000 7 8 3.1392 5.7401 0.0005 8 6 4.5258 6.0857 -0.0001 9 6 4.6717 7.6088 -0.0001 10 8 4.1424 8.1457 1.2409 11 6 4.1949 9.4775 1.4001 12 8 4.6671 10.1717 0.5312 13 6 3.6650 10.1068 2.6627 14 16 3.8770 11.9023 2.5768 15 6 3.1931 12.3661 4.1330 16 1 2.8086 11.6094 4.8009 17 6 3.1485 13.7037 4.5006 18 7 2.6371 14.0501 5.6630 19 14 3.8142 15.0124 3.3458 20 1 2.7273 15.4797 2.4481 21 1 4.3278 16.1579 4.1391 22 1 4.9166 14.4401 2.5319 23 6 3.8482 3.4693 0.0001 24 6 3.5386 2.1236 -0.0004 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.1618 2.3497 0.0099 29 1 0.7172 4.7471 0.0004 30 1 5.0031 5.6747 0.8895 31 1 5.0022 5.6755 -0.8905 32 1 5.7253 7.8729 -0.0901 33 1 4.1192 8.0268 -0.8416 34 1 2.6063 9.8704 2.7699 35 1 4.2130 9.7173 3.5206 36 1 2.6063 14.9850 5.9200 37 1 4.8808 3.7858 0.0006 38 1 4.3290 1.3875 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805390938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:48 Heat of formation + Delta-G solvation = -117.882101 kcal Electronic energy + Delta-G solvation = -21420.264064 eV Core-core repulsion = 17866.129902 eV Total energy + Delta-G solvation = -3554.134162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.61252 -41.02543 -38.59469 -37.52341 -34.69625 -32.75328 -32.24992 -31.33472 -30.28745 -29.57884 -27.90055 -25.11669 -23.69202 -23.02448 -22.28254 -19.97654 -19.50538 -18.83321 -18.44233 -17.66888 -17.56109 -17.12074 -16.85699 -16.56941 -15.91111 -15.80113 -15.69970 -15.11870 -14.93996 -14.71149 -14.66100 -14.53473 -14.07364 -13.82719 -13.61455 -13.55213 -13.37559 -13.03344 -12.98168 -12.80942 -12.68396 -12.24330 -12.09274 -11.88982 -11.70069 -11.62786 -11.20614 -11.18795 -10.64139 -10.12688 -10.08647 -9.07280 -8.52991 -8.20757 -6.26855 0.20525 0.26916 0.61347 0.76746 1.06162 1.31955 1.36296 1.49448 1.49711 1.83516 2.10360 2.23341 2.61999 2.63414 2.85075 3.52457 3.71545 3.81213 3.86177 3.97216 4.09714 4.15425 4.22992 4.26819 4.28865 4.29735 4.39136 4.42479 4.51978 4.55339 4.86343 4.93652 5.01886 5.19798 5.22433 5.26196 5.60477 5.69078 6.10846 6.35145 6.61361 6.90752 8.59321 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.027822 B = 0.001796 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.141827 B =15582.238569 C =16257.634084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.150 6.150 3 C -0.134 4.134 4 C -0.095 4.095 5 C -0.147 4.147 6 C 0.114 3.886 7 O -0.329 6.329 8 C 0.061 3.939 9 C 0.059 3.941 10 O -0.350 6.350 11 C 0.492 3.508 12 O -0.517 6.517 13 C -0.092 4.092 14 S -0.160 6.160 15 C -0.533 4.533 16 H 0.064 0.936 17 C 0.046 3.954 18 N -0.914 5.914 19 Si 0.915 3.085 20 H -0.261 1.261 21 H -0.258 1.258 22 H -0.233 1.233 23 C -0.191 4.191 24 C -0.067 4.067 25 H 0.124 0.876 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.278 0.722 37 H 0.156 0.844 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -29.376 -14.662 32.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.091 5.909 3 C -0.246 4.246 4 C -0.118 4.118 5 C -0.168 4.168 6 C 0.067 3.933 7 O -0.243 6.243 8 C -0.013 4.013 9 C -0.014 4.014 10 O -0.267 6.267 11 C 0.335 3.665 12 O -0.405 6.405 13 C -0.240 4.240 14 S 0.067 5.933 15 C -0.681 4.681 16 H 0.082 0.918 17 C -0.159 4.159 18 N -0.552 5.552 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.182 1.182 22 H -0.157 1.157 23 C -0.211 4.211 24 C -0.090 4.090 25 H 0.142 0.858 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.088 0.912 37 H 0.174 0.826 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.411 -29.313 -15.629 33.249 hybrid contribution -1.199 1.148 1.023 1.949 sum 0.213 -28.165 -14.607 31.728 Atomic orbital electron populations 1.23766 0.91949 1.08458 1.06428 1.85482 1.09679 1.02575 1.93196 1.21757 0.96912 0.97127 1.08840 1.21192 0.99430 0.91492 0.99698 1.20562 0.94421 0.96357 1.05428 1.19220 0.94469 0.82677 0.96980 1.86157 1.28027 1.21449 1.88664 1.23119 0.80735 0.92492 1.04966 1.23436 1.01227 0.92529 0.84231 1.86543 1.75595 1.22358 1.42186 1.22776 0.75184 0.80880 0.87709 1.90661 1.42779 1.63492 1.43574 1.22940 1.06613 0.97426 0.97030 1.84591 1.81693 1.01136 1.25923 1.22416 1.46306 0.96702 1.02647 0.91782 1.25579 0.93959 0.99986 0.96424 1.70019 1.44158 1.19251 1.21769 0.85860 0.81012 0.79675 0.79772 1.18605 1.18242 1.15725 1.21436 0.99831 0.92711 1.07082 1.20808 0.94820 0.95686 0.97681 0.85766 0.89082 0.88901 0.83415 0.84544 0.89320 0.86220 0.86924 0.90356 0.86029 0.85606 0.91244 0.82608 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.15 113.37 1.04 0.04 16 2 S -0.15 -2.08 22.56 -56.49 -1.27 -3.35 16 3 C -0.13 -2.21 6.11 22.59 0.14 -2.07 16 4 C -0.09 -1.51 9.36 22.40 0.21 -1.30 16 5 C -0.15 -2.76 9.98 22.35 0.22 -2.54 16 6 C 0.11 2.22 6.69 22.50 0.15 2.37 16 7 O -0.33 -7.02 10.11 -90.23 -0.91 -7.93 16 8 C 0.06 0.92 5.13 71.98 0.37 1.29 16 9 C 0.06 1.20 5.85 71.98 0.42 1.62 16 10 O -0.35 -9.88 10.19 -48.86 -0.50 -10.37 16 11 C 0.49 17.06 7.98 71.24 0.57 17.63 16 12 O -0.52 -20.38 15.61 21.97 0.34 -20.04 16 13 C -0.09 -3.50 6.27 71.24 0.45 -3.05 16 14 S -0.16 -7.84 18.55 -56.49 -1.05 -8.88 16 15 C -0.53 -30.58 10.04 67.95 0.68 -29.90 16 16 H 0.06 3.90 8.03 -2.91 -0.02 3.87 16 17 C 0.05 2.68 5.50 84.86 0.47 3.14 16 18 N -0.91 -55.03 13.97 21.65 0.30 -54.73 16 19 Si 0.92 43.78 27.74 68.60 1.90 45.68 16 20 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.23 -11.00 6.74 99.48 0.67 -10.33 16 23 C -0.19 -2.95 9.03 22.35 0.20 -2.75 16 24 C -0.07 -1.04 9.79 22.40 0.22 -0.82 16 25 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.09 0.58 7.73 -2.39 -0.02 0.56 16 27 H 0.09 0.54 7.76 -2.39 -0.02 0.53 16 28 H 0.15 1.66 5.87 -2.91 -0.02 1.64 16 29 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 30 H 0.09 1.13 7.66 -2.39 -0.02 1.12 16 31 H 0.12 1.00 7.66 -2.38 -0.02 0.98 16 32 H 0.11 1.88 8.13 -2.39 -0.02 1.86 16 33 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 34 H 0.12 4.39 8.14 -2.40 -0.02 4.37 16 35 H 0.13 4.42 8.14 -2.40 -0.02 4.40 16 36 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 37 H 0.16 1.56 6.29 -2.91 -0.02 1.55 16 38 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -71.90 356.65 4.99 -66.91 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.04 Total: 9.07 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 5.13 Total: -16.36 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.30 Total: -54.73 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -1.07 Total: -38.34 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.90 Total: 45.68 kcal Atomic # 16 Polarization: -9.91 SS G_CDS: -2.32 Total: -12.24 kcal Total: -71.90 4.99 -66.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805390938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.967 kcal (2) G-P(sol) polarization free energy of solvation -71.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds