Wall clock time and date at job start Tue Mar 31 2020 15:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47098 * 270.00370 * 3 2 1 5 5 H 1.48502 * 109.47123 * 30.00199 * 3 2 1 6 6 H 1.48498 * 109.47176 * 150.00418 * 3 2 1 7 7 C 1.38802 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99707 * 0.02562 * 7 2 1 9 9 S 1.76197 * 120.00306 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00276 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47307 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47314 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47338 * 179.97438 * 12 11 10 14 14 C 1.34899 * 117.00135 * 179.97438 * 13 12 11 15 15 O 1.21631 * 119.99932 * 0.02562 * 14 13 12 16 16 C 1.46392 * 119.99845 * 179.97438 * 14 13 12 17 17 C 1.36367 * 125.44356 * 180.02562 * 16 14 13 18 18 C 1.37919 * 114.02318 * 179.97438 * 17 16 14 19 19 C 1.35603 * 113.92297 * 359.97181 * 18 17 16 20 20 S 1.70356 * 111.19998 * 0.04263 * 19 18 17 21 21 C 1.51727 * 123.16647 * 179.97438 * 19 18 17 22 22 C 1.53354 * 107.99318 * 344.33093 * 21 19 18 23 23 O 1.43033 * 109.12512 * 47.87482 * 22 21 19 24 24 C 1.43003 * 114.15397 * 288.41556 * 23 22 21 25 25 H 0.96998 * 120.00020 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46806 * 59.99997 * 10 9 7 27 27 H 1.09003 * 109.47263 * 300.00859 * 10 9 7 28 28 H 1.09003 * 109.47328 * 60.00148 * 11 10 9 29 29 H 1.09004 * 109.47432 * 299.99990 * 11 10 9 30 30 H 1.09000 * 109.47347 * 60.00068 * 12 11 10 31 31 H 1.09002 * 109.47432 * 300.00165 * 12 11 10 32 32 H 1.08004 * 122.99175 * 359.97438 * 17 16 14 33 33 H 1.09002 * 109.76541 * 224.69040 * 21 19 18 34 34 H 1.09001 * 109.76859 * 103.97085 * 21 19 18 35 35 H 1.08995 * 109.53117 * 167.77278 * 22 21 19 36 36 H 1.09004 * 109.53179 * 287.98666 * 22 21 19 37 37 H 1.09001 * 109.68768 * 171.74029 * 24 23 22 38 38 H 1.08998 * 109.68818 * 292.27717 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5957 -3.2363 -0.0008 12 6 5.8614 -4.7431 -0.0012 13 8 7.2936 -4.9820 -0.0017 14 6 7.6999 -6.2684 -0.0016 15 8 6.8786 -7.1656 -0.0016 16 6 9.1293 -6.5845 -0.0027 17 6 9.6615 -7.8400 -0.0031 18 6 11.0405 -7.8653 -0.0047 19 6 11.6130 -6.6360 -0.0061 20 16 10.4333 -5.4070 -0.0043 21 6 13.1148 -6.4198 -0.0073 22 6 13.7841 -7.7419 0.3871 23 8 13.2117 -8.8043 -0.3807 24 6 11.8731 -9.1411 -0.0068 25 1 -0.4850 0.8400 0.0004 26 1 3.6433 -3.4318 -0.8907 27 1 3.6439 -3.4315 0.8892 28 1 6.0386 -2.7892 0.8891 29 1 6.0388 -2.7894 -0.8909 30 1 5.4186 -5.1899 -0.8914 31 1 5.4183 -5.1905 0.8885 32 1 9.0570 -8.7350 -0.0024 33 1 13.3762 -5.6448 0.7133 34 1 13.4436 -6.1229 -1.0032 35 1 14.8538 -7.6828 0.1867 36 1 13.6210 -7.9306 1.4483 37 1 11.4584 -9.8489 -0.7245 38 1 11.8703 -9.5838 0.9892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805443350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:59 Heat of formation + Delta-G solvation = -115.380589 kcal Electronic energy + Delta-G solvation = -21526.450135 eV Core-core repulsion = 17972.424447 eV Total energy + Delta-G solvation = -3554.025689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58093 -40.04750 -37.30508 -36.44284 -33.67569 -33.02343 -32.47190 -30.49357 -27.15220 -26.35797 -25.74836 -25.13893 -23.07623 -21.51251 -21.22972 -19.10269 -18.66126 -17.50316 -17.22006 -17.03142 -16.74099 -16.33378 -15.76262 -15.49845 -15.03286 -14.85638 -14.63872 -14.26774 -13.82076 -13.56901 -13.40840 -13.05857 -12.98221 -12.84334 -12.53207 -12.41573 -11.96319 -11.64617 -11.55547 -11.27515 -11.26631 -11.12489 -11.01217 -10.87890 -10.41789 -10.30922 -10.25425 -9.84626 -9.16067 -9.04121 -8.86529 -8.63678 -7.00209 -6.31486 -4.05064 -0.04864 0.97845 1.46254 1.70049 2.34559 2.61562 2.98626 3.27695 3.28131 3.42344 3.53212 3.99175 4.18204 4.28173 4.35725 4.54224 4.61263 4.71583 4.76752 4.85105 4.99624 5.01348 5.05714 5.07370 5.09086 5.12232 5.28923 5.33349 5.34628 5.60544 5.64170 5.74322 5.82380 5.99663 6.26503 6.29739 6.52209 6.54022 7.51010 7.92066 8.41414 9.13764 10.77869 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.035600 B = 0.001880 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.322147 B =14890.329505 C =15620.326002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.084 4.084 11 C -0.101 4.101 12 C 0.075 3.925 13 O -0.353 6.353 14 C 0.540 3.460 15 O -0.498 6.498 16 C -0.262 4.262 17 C -0.034 4.034 18 C -0.168 4.168 19 C -0.202 4.202 20 S 0.277 5.723 21 C -0.085 4.085 22 C 0.064 3.936 23 O -0.375 6.375 24 C 0.128 3.872 25 H 0.271 0.729 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.735 -16.094 1.202 33.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.116 4.116 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.140 4.140 12 C 0.000 4.000 13 O -0.270 6.270 14 C 0.383 3.617 15 O -0.388 6.388 16 C -0.381 4.381 17 C -0.067 4.067 18 C -0.181 4.181 19 C -0.322 4.322 20 S 0.549 5.451 21 C -0.124 4.124 22 C -0.014 4.014 23 O -0.294 6.294 24 C 0.049 3.951 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.174 0.826 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 30.117 -13.785 1.054 33.139 hybrid contribution -1.304 -1.665 0.163 2.121 sum 28.813 -15.450 1.217 32.716 Atomic orbital electron populations 1.69936 1.05910 1.27769 1.48027 1.24794 0.94526 0.99029 0.93293 0.86671 0.81727 0.83202 0.79747 1.19313 1.20031 1.16157 1.22120 0.86937 0.97526 1.58682 0.89287 1.84159 1.11851 1.04214 1.97560 1.22943 0.95860 1.00165 1.04304 1.21339 0.96050 0.92096 1.04487 1.23290 0.75452 0.98163 1.03097 1.86541 1.29379 1.27114 1.83968 1.19510 0.87389 0.81553 0.73256 1.90903 1.54109 1.47766 1.46006 1.23335 0.94945 0.98251 1.21548 1.20384 0.93482 0.96978 0.95892 1.20075 0.93497 0.96313 1.08212 1.24896 1.01857 0.98186 1.07290 1.83274 0.91280 1.05531 1.65002 1.21095 0.87462 0.99820 1.04054 1.22646 0.97933 0.85374 0.95441 1.87997 1.27640 1.53335 1.60387 1.21540 0.80453 0.91752 1.01350 0.91912 0.90948 0.90915 0.90175 0.90186 0.90725 0.90722 0.82648 0.88859 0.88716 0.87734 0.92299 0.87217 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.33 27.74 -169.99 -4.71 16.61 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.74 6.74 56.52 0.38 -5.36 16 7 C -0.51 -14.55 10.04 30.94 0.31 -14.24 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 9 S -0.21 -4.93 19.41 -107.50 -2.09 -7.02 16 10 C -0.08 -1.60 5.67 37.15 0.21 -1.39 16 11 C -0.10 -1.54 5.60 -26.74 -0.15 -1.69 16 12 C 0.07 1.04 5.48 37.16 0.20 1.25 16 13 O -0.35 -4.86 10.08 -41.04 -0.41 -5.28 16 14 C 0.54 7.39 7.92 34.01 0.27 7.66 16 15 O -0.50 -7.93 16.63 -19.37 -0.32 -8.25 16 16 C -0.26 -2.92 6.44 -36.98 -0.24 -3.15 16 17 C -0.03 -0.32 9.84 -40.37 -0.40 -0.72 16 18 C -0.17 -1.37 5.84 -104.86 -0.61 -1.98 16 19 C -0.20 -1.57 6.23 -34.74 -0.22 -1.79 16 20 S 0.28 2.42 22.87 -107.50 -2.46 -0.04 16 21 C -0.09 -0.44 6.52 -27.19 -0.18 -0.62 16 22 C 0.06 0.31 6.81 37.34 0.25 0.57 16 23 O -0.38 -2.78 10.72 -35.23 -0.38 -3.16 16 24 C 0.13 0.81 7.12 36.82 0.26 1.07 16 25 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.07 1.36 8.14 -51.91 -0.42 0.94 16 27 H 0.07 1.37 8.14 -51.91 -0.42 0.95 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.16 1.32 8.05 -52.48 -0.42 0.90 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.25 8.08 -51.93 -0.42 -0.17 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -33.28 353.40 -9.72 -43.00 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.07 Total: -2.94 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.38 Total: -12.45 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.78 Total: -25.80 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -1.11 Total: -16.69 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -4.55 Total: -7.06 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.28 -9.72 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805443350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.384 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds