Wall clock time and date at job start Tue Mar 31 2020 15:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47098 * 270.00370 * 3 2 1 5 5 H 1.48502 * 109.47123 * 30.00199 * 3 2 1 6 6 H 1.48498 * 109.47176 * 150.00418 * 3 2 1 7 7 C 1.38802 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99707 * 0.02562 * 7 2 1 9 9 S 1.76197 * 120.00306 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00276 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47307 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47314 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47338 * 179.97438 * 12 11 10 14 14 C 1.34899 * 117.00135 * 179.97438 * 13 12 11 15 15 O 1.21631 * 119.99932 * 0.02562 * 14 13 12 16 16 C 1.46392 * 119.99845 * 179.97438 * 14 13 12 17 17 C 1.36367 * 125.44356 * 180.02562 * 16 14 13 18 18 C 1.37919 * 114.02318 * 179.97438 * 17 16 14 19 19 C 1.35603 * 113.92297 * 359.97181 * 18 17 16 20 20 S 1.70356 * 111.19998 * 0.04263 * 19 18 17 21 21 C 1.51727 * 123.16647 * 179.97438 * 19 18 17 22 22 C 1.53354 * 107.99318 * 344.33093 * 21 19 18 23 23 O 1.43033 * 109.12512 * 47.87482 * 22 21 19 24 24 C 1.43003 * 114.15397 * 288.41556 * 23 22 21 25 25 H 0.96998 * 120.00020 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46806 * 59.99997 * 10 9 7 27 27 H 1.09003 * 109.47263 * 300.00859 * 10 9 7 28 28 H 1.09003 * 109.47328 * 60.00148 * 11 10 9 29 29 H 1.09004 * 109.47432 * 299.99990 * 11 10 9 30 30 H 1.09000 * 109.47347 * 60.00068 * 12 11 10 31 31 H 1.09002 * 109.47432 * 300.00165 * 12 11 10 32 32 H 1.08004 * 122.99175 * 359.97438 * 17 16 14 33 33 H 1.09002 * 109.76541 * 224.69040 * 21 19 18 34 34 H 1.09001 * 109.76859 * 103.97085 * 21 19 18 35 35 H 1.08995 * 109.53117 * 167.77278 * 22 21 19 36 36 H 1.09004 * 109.53179 * 287.98666 * 22 21 19 37 37 H 1.09001 * 109.68768 * 171.74029 * 24 23 22 38 38 H 1.08998 * 109.68818 * 292.27717 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5957 -3.2363 -0.0008 12 6 5.8614 -4.7431 -0.0012 13 8 7.2936 -4.9820 -0.0017 14 6 7.6999 -6.2684 -0.0016 15 8 6.8786 -7.1656 -0.0016 16 6 9.1293 -6.5845 -0.0027 17 6 9.6615 -7.8400 -0.0031 18 6 11.0405 -7.8653 -0.0047 19 6 11.6130 -6.6360 -0.0061 20 16 10.4333 -5.4070 -0.0043 21 6 13.1148 -6.4198 -0.0073 22 6 13.7841 -7.7419 0.3871 23 8 13.2117 -8.8043 -0.3807 24 6 11.8731 -9.1411 -0.0068 25 1 -0.4850 0.8400 0.0004 26 1 3.6433 -3.4318 -0.8907 27 1 3.6439 -3.4315 0.8892 28 1 6.0386 -2.7892 0.8891 29 1 6.0388 -2.7894 -0.8909 30 1 5.4186 -5.1899 -0.8914 31 1 5.4183 -5.1905 0.8885 32 1 9.0570 -8.7350 -0.0024 33 1 13.3762 -5.6448 0.7133 34 1 13.4436 -6.1229 -1.0032 35 1 14.8538 -7.6828 0.1867 36 1 13.6210 -7.9306 1.4483 37 1 11.4584 -9.8489 -0.7245 38 1 11.8703 -9.5838 0.9892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805443350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:58 Heat of formation + Delta-G solvation = -134.772564 kcal Electronic energy + Delta-G solvation = -21527.291035 eV Core-core repulsion = 17972.424447 eV Total energy + Delta-G solvation = -3554.866588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.57237 -40.65275 -38.16899 -37.30218 -34.99225 -34.69339 -33.52015 -31.15017 -28.39952 -27.81885 -26.88321 -26.02995 -23.71256 -22.79787 -22.05846 -19.95197 -19.56147 -19.38183 -17.99333 -17.86033 -17.79881 -17.11625 -17.00977 -16.30607 -16.16844 -16.05835 -16.03151 -15.02882 -14.90952 -14.68161 -14.39859 -14.18333 -14.08328 -13.90772 -13.72528 -13.38710 -13.06802 -12.97202 -12.67277 -12.53172 -12.46614 -12.36688 -12.15538 -11.89019 -11.73011 -11.70297 -11.60266 -11.17521 -10.72479 -10.62267 -9.84329 -9.50629 -9.01973 -8.52906 -6.25370 -0.79862 0.29023 0.78764 0.94886 1.02472 1.32412 1.35945 1.48671 1.71458 1.78914 2.23991 2.64486 2.85057 2.89075 3.45947 3.53997 3.72678 3.78928 3.89191 3.90235 4.06243 4.21333 4.25059 4.27237 4.37794 4.45347 4.55905 4.61151 4.65517 4.68346 4.78271 4.92002 4.94870 4.99955 5.07646 5.23173 5.26774 5.68386 6.09349 6.12929 6.45959 6.90476 8.60087 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.035600 B = 0.001880 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.322147 B =14890.329505 C =15620.326002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.037 3.963 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.226 1.226 7 C -0.527 4.527 8 H 0.051 0.949 9 S -0.204 6.204 10 C -0.074 4.074 11 C -0.087 4.087 12 C 0.080 3.920 13 O -0.353 6.353 14 C 0.540 3.460 15 O -0.530 6.530 16 C -0.301 4.301 17 C -0.025 4.025 18 C -0.180 4.180 19 C -0.192 4.192 20 S 0.290 5.710 21 C -0.087 4.087 22 C 0.059 3.941 23 O -0.394 6.394 24 C 0.127 3.873 25 H 0.277 0.723 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.099 -15.756 1.409 36.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.168 4.168 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.150 1.150 7 C -0.674 4.674 8 H 0.069 0.931 9 S 0.024 5.976 10 C -0.223 4.223 11 C -0.126 4.126 12 C 0.004 3.996 13 O -0.270 6.270 14 C 0.386 3.614 15 O -0.422 6.422 16 C -0.419 4.419 17 C -0.059 4.059 18 C -0.192 4.192 19 C -0.313 4.313 20 S 0.563 5.437 21 C -0.126 4.126 22 C -0.019 4.019 23 O -0.312 6.312 24 C 0.049 3.951 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.177 0.823 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 33.493 -13.449 1.264 36.114 hybrid contribution -2.258 -1.916 0.095 2.963 sum 31.235 -15.364 1.359 34.836 Atomic orbital electron populations 1.70041 1.07703 1.29172 1.49011 1.25806 0.95447 1.02876 0.92665 0.85701 0.80805 0.78471 0.80293 1.18522 1.18763 1.14975 1.22354 0.90106 0.96349 1.58613 0.93082 1.83791 1.07468 1.08773 1.97597 1.22964 0.98704 0.96284 1.04332 1.21153 0.93052 0.93167 1.05215 1.23108 0.75999 0.97076 1.03367 1.86521 1.28866 1.27540 1.84070 1.19901 0.88324 0.80913 0.72243 1.90878 1.55182 1.48303 1.47863 1.23270 0.94156 0.99713 1.24764 1.20570 0.94276 0.96658 0.94415 1.20284 0.93029 0.97450 1.08469 1.25355 1.03189 0.97723 1.05012 1.83156 0.90575 1.05193 1.64786 1.21297 0.85337 1.00816 1.05170 1.22872 0.98925 0.84412 0.95673 1.87979 1.27842 1.54181 1.61221 1.21666 0.79974 0.90985 1.02498 0.91364 0.91010 0.90941 0.89427 0.89474 0.90597 0.90524 0.82323 0.86723 0.87976 0.85636 0.91534 0.86386 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.71 13.97 21.65 0.30 -56.41 16 2 C 0.04 2.16 5.50 84.86 0.47 2.63 16 3 Si 0.93 43.64 27.74 68.60 1.90 45.54 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.23 -10.18 6.74 99.48 0.67 -9.51 16 7 C -0.53 -30.95 10.04 67.95 0.68 -30.27 16 8 H 0.05 3.27 8.03 -2.91 -0.02 3.25 16 9 S -0.20 -9.65 19.41 -56.49 -1.10 -10.75 16 10 C -0.07 -2.77 5.67 71.98 0.41 -2.37 16 11 C -0.09 -2.53 5.60 30.59 0.17 -2.36 16 12 C 0.08 2.15 5.48 71.98 0.39 2.55 16 13 O -0.35 -9.47 10.08 -58.14 -0.59 -10.06 16 14 C 0.54 14.75 7.92 69.94 0.55 15.30 16 15 O -0.53 -17.09 16.63 19.41 0.32 -16.77 16 16 C -0.30 -6.53 6.44 23.96 0.15 -6.37 16 17 C -0.03 -0.46 9.84 21.76 0.21 -0.24 16 18 C -0.18 -2.65 5.84 -20.02 -0.12 -2.77 16 19 C -0.19 -2.59 6.23 25.40 0.16 -2.43 16 20 S 0.29 4.65 22.87 -56.49 -1.29 3.36 16 21 C -0.09 -0.64 6.52 30.29 0.20 -0.44 16 22 C 0.06 0.40 6.81 72.10 0.49 0.89 16 23 O -0.39 -4.92 10.72 -148.98 -1.60 -6.52 16 24 C 0.13 1.37 7.12 71.77 0.51 1.88 16 25 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 26 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.16 2.65 8.05 -2.91 -0.02 2.63 16 33 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.07 0.36 8.08 -2.38 -0.02 0.34 16 37 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -72.31 353.40 3.28 -69.03 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.03 Total: 6.56 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 4.29 Total: -23.99 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.30 Total: -56.41 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.86 Total: -33.34 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.90 Total: 45.54 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -2.39 Total: -7.39 kcal Total: -72.31 3.28 -69.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805443350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.744 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds