Wall clock time and date at job start Tue Mar 31 2020 15:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47130 * 269.99800 * 3 2 1 5 5 H 1.48505 * 109.47069 * 29.99643 * 3 2 1 6 6 H 1.48498 * 109.47117 * 149.99593 * 3 2 1 7 7 C 1.38799 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00022 * 0.02562 * 7 2 1 9 9 S 1.76196 * 120.00248 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00180 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47350 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47286 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.47076 * 180.02562 * 12 11 10 14 14 C 1.34994 * 116.99722 * 179.97438 * 13 12 11 15 15 O 1.21736 * 120.00340 * 359.97438 * 14 13 12 16 16 C 1.41023 * 119.99883 * 180.02562 * 14 13 12 17 17 C 1.35250 * 120.00175 * 179.97438 * 16 14 13 18 18 S 1.76193 * 120.00064 * 179.97438 * 17 16 14 19 19 C 1.81002 * 100.00049 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47156 * 180.02562 * 19 18 17 21 21 C 1.34518 * 125.78832 * 89.71552 * 20 19 18 22 22 C 1.41377 * 106.83972 * 179.88997 * 21 20 19 23 23 C 1.34513 * 106.84156 * 0.37021 * 22 21 20 24 24 O 1.34300 * 125.78840 * 270.02634 * 20 19 18 25 25 H 0.97000 * 119.99271 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46942 * 59.99706 * 10 9 7 27 27 H 1.09004 * 109.47359 * 300.00232 * 10 9 7 28 28 H 1.08995 * 109.47447 * 59.99802 * 11 10 9 29 29 H 1.09007 * 109.46617 * 299.99893 * 11 10 9 30 30 H 1.08995 * 109.47476 * 59.99284 * 12 11 10 31 31 H 1.09007 * 109.46767 * 299.99265 * 12 11 10 32 32 H 1.08000 * 119.99837 * 359.97438 * 16 14 13 33 33 H 1.08005 * 119.99909 * 359.97438 * 17 16 14 34 34 H 1.09002 * 109.47115 * 60.00094 * 19 18 17 35 35 H 1.09001 * 109.46925 * 300.00251 * 19 18 17 36 36 H 1.08007 * 126.57748 * 0.02871 * 21 20 19 37 37 H 1.07997 * 126.57885 * 180.16682 * 22 21 20 38 38 H 1.08002 * 125.78655 * 179.74823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5957 -3.2364 0.0021 12 6 5.8613 -4.7432 0.0012 13 8 7.2709 -4.9784 0.0029 14 6 7.6774 -6.2656 0.0030 15 8 6.8554 -7.1636 0.0021 16 6 9.0543 -6.5702 0.0051 17 6 9.4617 -7.8599 0.0057 18 16 11.1820 -8.2405 0.0077 19 6 11.1040 -10.0488 0.0085 20 6 12.5018 -10.6120 0.0110 21 6 13.2318 -10.9004 1.1034 22 6 14.4710 -11.4048 0.6465 23 6 14.4272 -11.3868 -0.6978 24 8 13.2321 -10.9056 -1.0772 25 1 -0.4849 0.8401 -0.0004 26 1 3.6439 -3.4314 -0.8893 27 1 3.6433 -3.4319 0.8906 28 1 6.0380 -2.7897 0.8925 29 1 6.0393 -2.7891 -0.8875 30 1 5.4191 -5.1896 -0.8894 31 1 5.4177 -5.1908 0.8906 32 1 9.7836 -5.7736 0.0064 33 1 8.7324 -8.6566 0.0049 34 1 10.5759 -10.3901 -0.8819 35 1 10.5739 -10.3892 0.8981 36 1 12.9285 -10.7732 2.1322 37 1 15.2958 -11.7374 1.2592 38 1 15.2191 -11.7050 -1.3598 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805493529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:21 Heat of formation + Delta-G solvation = -64.200749 kcal Electronic energy + Delta-G solvation = -20374.259718 eV Core-core repulsion = 16822.453354 eV Total energy + Delta-G solvation = -3551.806364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.17421 -40.63477 -37.06732 -33.85372 -33.73909 -33.33913 -32.66669 -32.44763 -27.64131 -27.05442 -25.68852 -24.50407 -22.38239 -21.47229 -21.33371 -20.30038 -18.43126 -18.06956 -17.43002 -17.13959 -16.76655 -16.71637 -16.35898 -15.38510 -15.00844 -14.80563 -14.68873 -14.63643 -14.06236 -13.60588 -13.43506 -13.29076 -12.96941 -12.93472 -12.81085 -12.75064 -12.38267 -11.51924 -11.28434 -11.16041 -11.12331 -11.07324 -10.96094 -10.80288 -10.51668 -10.29462 -10.24425 -9.81526 -9.09260 -9.01623 -8.60150 -8.26101 -6.97031 -6.29256 -4.02433 0.34861 0.39506 1.31047 1.57781 2.10251 2.30316 2.73885 2.75994 3.10191 3.30027 3.45019 3.58947 3.82301 4.16628 4.30754 4.40137 4.46956 4.54999 4.62362 4.74826 4.92053 5.06875 5.10249 5.18469 5.18757 5.28436 5.29423 5.42309 5.43155 5.51332 5.70494 5.82306 5.85223 6.07554 6.35833 6.39368 6.47622 6.59379 7.66610 7.94406 8.43630 9.16272 10.80178 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.060832 B = 0.001350 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.174552 B =20739.092425 C =20995.385149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.093 3.907 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.207 6.207 10 C -0.084 4.084 11 C -0.101 4.101 12 C 0.071 3.929 13 O -0.345 6.345 14 C 0.506 3.494 15 O -0.518 6.518 16 C -0.178 4.178 17 C -0.075 4.075 18 S -0.058 6.058 19 C -0.041 4.041 20 C -0.015 4.015 21 C -0.177 4.177 22 C -0.216 4.216 23 C -0.025 4.025 24 O -0.170 6.170 25 H 0.271 0.729 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.501 -23.957 0.605 38.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.652 4.652 8 H 0.107 0.893 9 S 0.021 5.979 10 C -0.232 4.232 11 C -0.139 4.139 12 C -0.004 4.004 13 O -0.262 6.262 14 C 0.351 3.649 15 O -0.410 6.410 16 C -0.211 4.211 17 C -0.209 4.209 18 S 0.190 5.810 19 C -0.188 4.188 20 C -0.066 4.066 21 C -0.199 4.199 22 C -0.235 4.235 23 C -0.094 4.094 24 O -0.066 6.066 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 31.679 -22.533 0.303 38.876 hybrid contribution -1.917 -1.127 0.146 2.229 sum 29.761 -23.660 0.450 38.023 Atomic orbital electron populations 1.69941 1.05929 1.27742 1.48137 1.24785 0.94504 0.99006 0.93274 0.86673 0.81749 0.83202 0.79747 1.19323 1.20039 1.16139 1.22130 0.86998 0.97515 1.58599 0.89317 1.84161 1.11775 1.04408 1.97554 1.22951 0.96081 0.99992 1.04222 1.21332 0.95889 0.92290 1.04397 1.22828 0.76952 0.97986 1.02679 1.86191 1.28476 1.27842 1.83681 1.19543 0.90114 0.81304 0.73915 1.90909 1.56069 1.47517 1.46540 1.20686 0.93961 0.96811 1.09592 1.25940 0.99234 1.00553 0.95124 1.86392 1.01935 1.03553 1.89151 1.22040 0.93075 0.95091 1.08614 1.21190 0.94109 1.06377 0.84934 1.21703 0.94513 1.04163 0.99541 1.21903 0.99677 1.07051 0.94886 1.24190 0.86929 1.01936 0.96313 1.84033 1.24417 1.63608 1.34567 0.91938 0.91017 0.90980 0.90247 0.90269 0.91227 0.91233 0.83700 0.83088 0.86911 0.85831 0.82857 0.82948 0.77611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.75 13.97 55.49 0.78 -25.98 16 2 C 0.09 2.71 5.50 -17.43 -0.10 2.61 16 3 Si 0.86 21.49 27.74 -169.99 -4.71 16.77 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 7 C -0.50 -14.67 10.04 30.94 0.31 -14.36 16 8 H 0.09 2.74 8.03 -52.48 -0.42 2.32 16 9 S -0.21 -5.03 19.41 -107.50 -2.09 -7.11 16 10 C -0.08 -1.62 5.67 37.16 0.21 -1.41 16 11 C -0.10 -1.57 5.59 -26.73 -0.15 -1.72 16 12 C 0.07 1.01 5.38 37.16 0.20 1.21 16 13 O -0.35 -4.73 10.10 -41.30 -0.42 -5.15 16 14 C 0.51 6.48 7.67 31.79 0.24 6.73 16 15 O -0.52 -7.83 15.87 -19.45 -0.31 -8.14 16 16 C -0.18 -1.70 9.65 -39.59 -0.38 -2.08 16 17 C -0.08 -0.58 9.53 29.67 0.28 -0.30 16 18 S -0.06 -0.38 22.02 -107.50 -2.37 -2.75 16 19 C -0.04 -0.20 6.20 36.01 0.22 0.03 16 20 C -0.01 -0.09 6.58 -35.62 -0.23 -0.33 16 21 C -0.18 -1.01 10.81 -39.70 -0.43 -1.44 16 22 C -0.22 -1.08 10.91 -39.70 -0.43 -1.51 16 23 C -0.02 -0.12 12.09 29.42 0.36 0.24 16 24 O -0.17 -1.21 10.65 5.70 0.06 -1.15 16 25 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.07 1.38 8.14 -51.91 -0.42 0.95 16 27 H 0.07 1.38 8.14 -51.91 -0.42 0.96 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 30 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.07 0.98 8.13 -51.92 -0.42 0.55 16 32 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.15 1.10 7.41 -52.48 -0.39 0.72 16 34 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.12 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.21 0.23 8.06 -52.49 -0.42 -0.19 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -34.02 367.42 -8.46 -42.48 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.04 Total: -2.18 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 0.10 Total: -12.33 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.78 Total: -25.98 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.67 Total: -14.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -4.45 Total: -9.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.02 -8.46 -42.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805493529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.720 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds