Wall clock time and date at job start Tue Mar 31 2020 15:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47130 * 269.99800 * 3 2 1 5 5 H 1.48505 * 109.47069 * 29.99643 * 3 2 1 6 6 H 1.48498 * 109.47117 * 149.99593 * 3 2 1 7 7 C 1.38799 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00022 * 0.02562 * 7 2 1 9 9 S 1.76196 * 120.00248 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00180 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47350 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47286 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.47076 * 180.02562 * 12 11 10 14 14 C 1.34994 * 116.99722 * 179.97438 * 13 12 11 15 15 O 1.21736 * 120.00340 * 359.97438 * 14 13 12 16 16 C 1.41023 * 119.99883 * 180.02562 * 14 13 12 17 17 C 1.35250 * 120.00175 * 179.97438 * 16 14 13 18 18 S 1.76193 * 120.00064 * 179.97438 * 17 16 14 19 19 C 1.81002 * 100.00049 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47156 * 180.02562 * 19 18 17 21 21 C 1.34518 * 125.78832 * 89.71552 * 20 19 18 22 22 C 1.41377 * 106.83972 * 179.88997 * 21 20 19 23 23 C 1.34513 * 106.84156 * 0.37021 * 22 21 20 24 24 O 1.34300 * 125.78840 * 270.02634 * 20 19 18 25 25 H 0.97000 * 119.99271 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46942 * 59.99706 * 10 9 7 27 27 H 1.09004 * 109.47359 * 300.00232 * 10 9 7 28 28 H 1.08995 * 109.47447 * 59.99802 * 11 10 9 29 29 H 1.09007 * 109.46617 * 299.99893 * 11 10 9 30 30 H 1.08995 * 109.47476 * 59.99284 * 12 11 10 31 31 H 1.09007 * 109.46767 * 299.99265 * 12 11 10 32 32 H 1.08000 * 119.99837 * 359.97438 * 16 14 13 33 33 H 1.08005 * 119.99909 * 359.97438 * 17 16 14 34 34 H 1.09002 * 109.47115 * 60.00094 * 19 18 17 35 35 H 1.09001 * 109.46925 * 300.00251 * 19 18 17 36 36 H 1.08007 * 126.57748 * 0.02871 * 21 20 19 37 37 H 1.07997 * 126.57885 * 180.16682 * 22 21 20 38 38 H 1.08002 * 125.78655 * 179.74823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5957 -3.2364 0.0021 12 6 5.8613 -4.7432 0.0012 13 8 7.2709 -4.9784 0.0029 14 6 7.6774 -6.2656 0.0030 15 8 6.8554 -7.1636 0.0021 16 6 9.0543 -6.5702 0.0051 17 6 9.4617 -7.8599 0.0057 18 16 11.1820 -8.2405 0.0077 19 6 11.1040 -10.0488 0.0085 20 6 12.5018 -10.6120 0.0110 21 6 13.2318 -10.9004 1.1034 22 6 14.4710 -11.4048 0.6465 23 6 14.4272 -11.3868 -0.6978 24 8 13.2321 -10.9056 -1.0772 25 1 -0.4849 0.8401 -0.0004 26 1 3.6439 -3.4314 -0.8893 27 1 3.6433 -3.4319 0.8906 28 1 6.0380 -2.7897 0.8925 29 1 6.0393 -2.7891 -0.8875 30 1 5.4191 -5.1896 -0.8894 31 1 5.4177 -5.1908 0.8906 32 1 9.7836 -5.7736 0.0064 33 1 8.7324 -8.6566 0.0049 34 1 10.5759 -10.3901 -0.8819 35 1 10.5739 -10.3892 0.8981 36 1 12.9285 -10.7732 2.1322 37 1 15.2958 -11.7374 1.2592 38 1 15.2191 -11.7050 -1.3598 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805493529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:20 Heat of formation + Delta-G solvation = -82.888483 kcal Electronic energy + Delta-G solvation = -20375.070079 eV Core-core repulsion = 16822.453354 eV Total energy + Delta-G solvation = -3552.616725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.56042 -41.64681 -38.12468 -34.93495 -34.68389 -34.24952 -34.23512 -33.02416 -28.54319 -27.95055 -27.69887 -25.49104 -22.77625 -22.75784 -21.86663 -21.06840 -19.65456 -19.22155 -18.48519 -17.81354 -17.75325 -17.59453 -17.10273 -16.89674 -16.18326 -16.00373 -15.73098 -15.16355 -15.00468 -14.84166 -14.50387 -14.22521 -14.04999 -13.80090 -13.63799 -13.60962 -13.32312 -13.16129 -13.04799 -12.60741 -12.40875 -12.25664 -11.88641 -11.85447 -11.69061 -11.55070 -11.46348 -11.16415 -10.90551 -10.60423 -9.47186 -9.00721 -8.83033 -8.52059 -6.24331 -0.36381 -0.14584 0.78282 1.08637 1.16108 1.33355 1.47767 1.61101 1.73001 1.86993 1.96822 2.06015 2.25255 2.66554 2.86169 3.48555 3.81941 3.84122 3.87469 3.96728 3.97715 4.07084 4.14439 4.25405 4.29721 4.31836 4.47677 4.64698 4.66236 4.85356 4.90752 4.95971 4.99593 5.10674 5.11252 5.43229 5.52435 5.69369 6.09985 6.10081 6.68356 6.91635 8.61065 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.060832 B = 0.001350 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.174552 B =20739.092425 C =20995.385149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.039 3.961 3 Si 0.926 3.074 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.227 1.227 7 C -0.527 4.527 8 H 0.051 0.949 9 S -0.207 6.207 10 C -0.074 4.074 11 C -0.088 4.088 12 C 0.078 3.922 13 O -0.349 6.349 14 C 0.507 3.493 15 O -0.550 6.550 16 C -0.204 4.204 17 C -0.049 4.049 18 S -0.055 6.055 19 C -0.039 4.039 20 C -0.036 4.036 21 C -0.184 4.184 22 C -0.230 4.230 23 C -0.027 4.027 24 O -0.191 6.191 25 H 0.277 0.723 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.166 0.834 37 H 0.170 0.830 38 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.351 -24.396 0.744 41.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.151 1.151 7 C -0.675 4.675 8 H 0.069 0.931 9 S 0.021 5.979 10 C -0.222 4.222 11 C -0.126 4.126 12 C 0.002 3.998 13 O -0.266 6.266 14 C 0.355 3.645 15 O -0.444 6.444 16 C -0.237 4.237 17 C -0.183 4.183 18 S 0.194 5.806 19 C -0.185 4.185 20 C -0.086 4.086 21 C -0.206 4.206 22 C -0.249 4.249 23 C -0.095 4.095 24 O -0.088 6.088 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.173 0.827 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.183 0.817 37 H 0.188 0.812 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 34.553 -22.983 0.446 41.501 hybrid contribution -2.667 -1.257 0.104 2.950 sum 31.886 -24.240 0.550 40.057 Atomic orbital electron populations 1.70044 1.07718 1.29162 1.49084 1.25779 0.95400 1.02795 0.92596 0.85711 0.80803 0.78524 0.80295 1.18525 1.18698 1.15058 1.22363 0.90115 0.96364 1.58613 0.93099 1.83807 1.07473 1.08986 1.97594 1.22979 0.98934 0.96103 1.04232 1.21156 0.92869 0.93546 1.05034 1.22604 0.77717 0.96714 1.02812 1.86174 1.27714 1.28710 1.83963 1.20019 0.91069 0.80464 0.72959 1.90892 1.56999 1.47971 1.48588 1.20626 0.92403 0.97905 1.12748 1.26093 1.00203 1.00117 0.91870 1.86487 1.00539 1.05650 1.87948 1.22184 0.92891 0.93312 1.10156 1.21440 0.94787 1.07385 0.85024 1.22025 0.94825 1.03683 1.00110 1.22240 1.00071 1.07247 0.95377 1.24897 0.86723 1.00858 0.97060 1.84024 1.25331 1.64140 1.35276 0.91363 0.91081 0.91024 0.89601 0.89632 0.91208 0.91167 0.82440 0.82652 0.85998 0.83803 0.81681 0.81244 0.74626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.01 13.97 21.65 0.30 -56.71 16 2 C 0.04 2.30 5.50 84.86 0.47 2.77 16 3 Si 0.93 43.97 27.74 68.60 1.90 45.88 16 4 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.23 -10.34 6.74 99.48 0.67 -9.67 16 7 C -0.53 -31.22 10.04 67.95 0.68 -30.54 16 8 H 0.05 3.28 8.03 -2.91 -0.02 3.26 16 9 S -0.21 -9.90 19.41 -56.49 -1.10 -11.00 16 10 C -0.07 -2.81 5.67 71.98 0.41 -2.41 16 11 C -0.09 -2.60 5.59 30.59 0.17 -2.43 16 12 C 0.08 2.13 5.38 71.98 0.39 2.52 16 13 O -0.35 -9.19 10.10 -59.12 -0.60 -9.79 16 14 C 0.51 12.63 7.67 68.50 0.53 13.16 16 15 O -0.55 -16.42 15.87 19.06 0.30 -16.12 16 16 C -0.20 -3.65 9.65 22.26 0.21 -3.44 16 17 C -0.05 -0.68 9.53 67.13 0.64 -0.04 16 18 S -0.06 -0.64 22.02 -56.49 -1.24 -1.88 16 19 C -0.04 -0.30 6.20 71.24 0.44 0.14 16 20 C -0.04 -0.40 6.58 24.83 0.16 -0.23 16 21 C -0.18 -1.83 10.81 22.19 0.24 -1.59 16 22 C -0.23 -1.92 10.91 22.19 0.24 -1.68 16 23 C -0.03 -0.21 12.09 66.97 0.81 0.60 16 24 O -0.19 -2.47 10.65 -2.50 -0.03 -2.50 16 25 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 26 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.07 1.92 8.13 -2.38 -0.02 1.90 16 32 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.16 2.03 7.41 -2.91 -0.02 2.01 16 34 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 37 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 38 H 0.24 -0.02 8.06 -2.91 -0.02 -0.04 16 Total: -1.00 -73.78 367.42 5.95 -67.82 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.02 Total: 7.46 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 5.39 Total: -23.17 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.30 Total: -56.71 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.32 Total: -28.40 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.90 Total: 45.88 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -2.34 Total: -12.88 kcal Total: -73.78 5.95 -67.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805493529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.067 kcal (2) G-P(sol) polarization free energy of solvation -73.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds