Wall clock time and date at job start Tue Mar 31 2020 15:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42105 * 109.46988 * 2 1 4 4 C 1.76197 * 103.00066 * 250.94469 * 2 1 3 5 5 C 1.38400 * 119.92389 * 89.99942 * 4 2 1 6 6 C 1.38341 * 120.29912 * 179.97438 * 5 4 2 7 7 C 1.37963 * 120.15641 * 0.02562 * 6 5 4 8 8 C 1.39611 * 119.84302 * 359.97438 * 7 6 5 9 9 C 1.47724 * 120.14589 * 179.97438 * 8 7 6 10 10 O 1.21469 * 120.00047 * 179.97438 * 9 8 7 11 11 O 1.34708 * 120.00334 * 0.02562 * 9 8 7 12 12 C 1.45199 * 117.00532 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47655 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47273 * 180.02562 * 13 12 11 15 15 S 1.80999 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.76203 * 100.00119 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99374 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00213 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00129 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00139 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46940 * 359.97438 * 20 18 16 22 22 H 1.48489 * 109.47497 * 119.99595 * 20 18 16 23 23 H 1.48497 * 109.47008 * 239.99941 * 20 18 16 24 24 C 1.37921 * 119.92698 * 269.72574 * 4 2 1 25 25 H 1.09000 * 109.46905 * 49.05257 * 1 2 3 26 26 H 1.08994 * 109.47180 * 169.05162 * 1 2 3 27 27 H 1.09001 * 109.47115 * 289.05867 * 1 2 3 28 28 H 1.07995 * 119.84364 * 359.97438 * 5 4 2 29 29 H 1.08009 * 119.91990 * 180.02562 * 6 5 4 30 30 H 1.08003 * 120.07858 * 179.97438 * 7 6 5 31 31 H 1.09003 * 109.47077 * 300.00168 * 12 11 9 32 32 H 1.09003 * 109.47375 * 59.99576 * 12 11 9 33 33 H 1.09002 * 109.47138 * 299.99683 * 13 12 11 34 34 H 1.08996 * 109.47228 * 59.99753 * 13 12 11 35 35 H 1.08999 * 109.46958 * 299.99403 * 14 13 12 36 36 H 1.09001 * 109.46909 * 60.00064 * 14 13 12 37 37 H 0.97005 * 119.99855 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.07060 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5605 -1.6227 5 6 2.3657 0.3536 -2.6502 6 6 2.6775 -0.0778 -3.9271 7 6 2.8351 -1.4240 -4.1846 8 6 2.6799 -2.3516 -3.1528 9 6 2.8467 -3.7946 -3.4212 10 8 2.7115 -4.5993 -2.5213 11 8 3.1497 -4.2181 -4.6635 12 6 3.2992 -5.6498 -4.8539 13 6 3.6396 -5.9370 -6.3176 14 6 3.7965 -7.4457 -6.5182 15 16 4.1984 -7.7854 -8.2500 16 6 4.3181 -9.5425 -8.1974 17 1 4.1554 -10.0672 -7.2674 18 6 4.6224 -10.2523 -9.3506 19 7 4.8211 -9.6128 -10.4838 20 14 4.7485 -12.1152 -9.2950 21 1 4.4827 -12.5883 -7.9126 22 1 3.7504 -12.7069 -10.2215 23 1 6.1134 -12.5314 -9.7061 24 6 2.3708 -1.9088 -1.8650 25 1 -0.3633 0.6735 -0.7762 26 1 -0.3633 -1.0089 -0.1952 27 1 -0.3633 0.3356 0.9713 28 1 2.2430 1.4085 -2.4541 29 1 2.7977 0.6409 -4.7243 30 1 3.0781 -1.7595 -5.1821 31 1 4.1010 -6.0196 -4.2147 32 1 2.3667 -6.1504 -4.5931 33 1 2.8375 -5.5674 -6.9564 34 1 4.5719 -5.4365 -6.5787 35 1 4.5984 -7.8157 -5.8794 36 1 2.8638 -7.9458 -6.2572 37 1 5.0334 -10.1089 -11.2899 38 1 2.2541 -2.6206 -1.0612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805531863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:07 Heat of formation + Delta-G solvation = -110.150406 kcal Electronic energy + Delta-G solvation = -21358.999384 eV Core-core repulsion = 17805.200493 eV Total energy + Delta-G solvation = -3553.798891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76321 -39.12175 -36.75165 -36.21718 -33.61059 -32.47239 -31.90112 -31.63329 -29.27514 -26.88645 -25.56927 -24.42952 -23.39070 -21.45611 -21.25747 -18.98645 -17.60328 -17.46921 -17.31913 -16.68556 -16.38901 -15.79514 -15.58677 -15.32019 -14.84431 -14.73613 -14.51116 -14.28213 -14.06106 -13.48950 -13.39686 -13.19384 -12.83890 -12.70394 -12.55278 -12.19699 -12.14629 -12.02191 -11.39525 -11.19452 -11.04387 -10.95937 -10.85748 -10.73250 -10.59587 -10.35365 -9.80771 -9.66176 -9.55496 -9.11069 -8.89596 -8.38589 -6.59578 -6.27568 -3.98791 0.16748 0.52654 1.32491 2.07126 2.30503 2.42742 3.18746 3.19430 3.20758 3.27877 3.42544 3.50941 4.17183 4.30163 4.34314 4.57476 4.67041 4.72963 4.75640 4.91492 5.05629 5.09487 5.10056 5.12569 5.31713 5.34859 5.43336 5.48293 5.59257 5.72781 5.73188 5.79606 5.87457 6.09954 6.25044 6.33760 6.40263 6.62058 7.55435 7.56837 8.32423 9.19079 10.80620 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.041611 B = 0.001685 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.730329 B =16617.501136 C =17096.564682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.339 4.661 3 O -0.855 6.855 4 C -0.477 4.477 5 C -0.023 4.023 6 C -0.146 4.146 7 C -0.026 4.026 8 C -0.138 4.138 9 C 0.508 3.492 10 O -0.505 6.505 11 O -0.351 6.351 12 C 0.074 3.926 13 C -0.098 4.098 14 C -0.114 4.114 15 S -0.124 6.124 16 C -0.518 4.518 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.869 5.869 20 Si 0.920 3.080 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.019 3.981 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.146 0.854 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.267 0.733 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 18.937 20.824 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.535 4.465 3 O -0.851 6.851 4 C -0.572 4.572 5 C -0.042 4.042 6 C -0.165 4.165 7 C -0.044 4.044 8 C -0.140 4.140 9 C 0.353 3.647 10 O -0.394 6.394 11 O -0.267 6.267 12 C -0.001 4.001 13 C -0.137 4.137 14 C -0.263 4.263 15 S 0.104 5.896 16 C -0.666 4.666 17 H 0.092 0.908 18 C -0.138 4.138 19 N -0.505 5.505 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.001 4.001 25 H 0.101 0.899 26 H 0.132 0.868 27 H 0.126 0.874 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.632 19.617 20.707 29.285 hybrid contribution -0.955 -0.925 -0.839 1.572 sum -7.587 18.691 19.869 28.314 Atomic orbital electron populations 1.27772 1.22057 1.08252 1.07487 1.69727 0.86135 0.99430 0.91184 1.93107 1.73316 1.37307 1.81343 1.27728 1.13535 0.98928 1.17038 1.21412 0.90734 0.99827 0.92187 1.21316 1.01874 0.95895 0.97379 1.21790 0.90554 0.92641 0.99390 1.19294 1.09060 0.90119 0.95517 1.21013 0.73489 0.89129 0.81113 1.90836 1.47024 1.56045 1.45544 1.86506 1.80251 1.29179 1.30794 1.23329 1.02316 0.75497 0.98949 1.21293 1.03613 0.96168 0.92589 1.23179 1.03334 0.95754 1.04044 1.84662 1.91734 1.10046 1.03180 1.22739 1.55391 0.90204 0.98286 0.90752 1.25023 0.94563 0.99608 0.94597 1.70027 1.44894 1.35967 0.99583 0.86089 0.77957 0.82986 0.78359 1.19560 1.20539 1.20535 1.20947 0.89582 0.93952 0.95578 0.89884 0.86799 0.87402 0.84916 0.84614 0.83580 0.90893 0.90935 0.90335 0.90306 0.91671 0.91689 0.92285 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.06 10.70 101.05 1.08 -0.98 16 2 S 1.34 6.71 14.18 -107.50 -1.52 5.18 16 3 O -0.86 -9.61 16.89 -35.23 -0.60 -10.20 16 4 C -0.48 -3.49 5.60 -39.64 -0.22 -3.71 16 5 C -0.02 -0.19 9.44 -39.48 -0.37 -0.56 16 6 C -0.15 -1.15 10.03 -39.64 -0.40 -1.55 16 7 C -0.03 -0.22 9.62 -39.17 -0.38 -0.60 16 8 C -0.14 -1.35 5.87 -104.98 -0.62 -1.97 16 9 C 0.51 6.25 7.90 34.61 0.27 6.52 16 10 O -0.50 -7.11 16.14 -19.24 -0.31 -7.42 16 11 O -0.35 -4.55 9.47 -40.51 -0.38 -4.93 16 12 C 0.07 1.01 5.47 37.15 0.20 1.21 16 13 C -0.10 -1.53 5.60 -26.73 -0.15 -1.68 16 14 C -0.11 -2.21 5.67 37.16 0.21 -2.00 16 15 S -0.12 -3.17 21.44 -107.50 -2.30 -5.48 16 16 C -0.52 -14.61 9.50 30.94 0.29 -14.31 16 17 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 18 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 19 N -0.87 -25.62 13.22 55.49 0.73 -24.88 16 20 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.02 0.14 9.30 -39.17 -0.36 -0.22 16 25 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 26 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.11 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.13 1.15 7.44 -52.49 -0.39 0.75 16 29 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 30 H 0.15 1.16 7.61 -52.48 -0.40 0.76 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 36 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.15 0.78 7.65 -52.49 -0.40 0.38 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -37.18 362.55 -9.44 -46.62 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.96 Total: -2.61 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -0.53 Total: -17.96 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.73 Total: -24.88 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.29 Total: -22.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -3.83 Total: -0.30 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.18 -9.44 -46.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805531863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.532 kcal (2) G-P(sol) polarization free energy of solvation -37.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds