Wall clock time and date at job start Tue Mar 31 2020 15:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42105 * 109.46988 * 2 1 4 4 C 1.76197 * 103.00066 * 250.94469 * 2 1 3 5 5 C 1.38400 * 119.92389 * 89.99942 * 4 2 1 6 6 C 1.38341 * 120.29912 * 179.97438 * 5 4 2 7 7 C 1.37963 * 120.15641 * 0.02562 * 6 5 4 8 8 C 1.39611 * 119.84302 * 359.97438 * 7 6 5 9 9 C 1.47724 * 120.14589 * 179.97438 * 8 7 6 10 10 O 1.21469 * 120.00047 * 179.97438 * 9 8 7 11 11 O 1.34708 * 120.00334 * 0.02562 * 9 8 7 12 12 C 1.45199 * 117.00532 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47655 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47273 * 180.02562 * 13 12 11 15 15 S 1.80999 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.76203 * 100.00119 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99374 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00213 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00129 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00139 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46940 * 359.97438 * 20 18 16 22 22 H 1.48489 * 109.47497 * 119.99595 * 20 18 16 23 23 H 1.48497 * 109.47008 * 239.99941 * 20 18 16 24 24 C 1.37921 * 119.92698 * 269.72574 * 4 2 1 25 25 H 1.09000 * 109.46905 * 49.05257 * 1 2 3 26 26 H 1.08994 * 109.47180 * 169.05162 * 1 2 3 27 27 H 1.09001 * 109.47115 * 289.05867 * 1 2 3 28 28 H 1.07995 * 119.84364 * 359.97438 * 5 4 2 29 29 H 1.08009 * 119.91990 * 180.02562 * 6 5 4 30 30 H 1.08003 * 120.07858 * 179.97438 * 7 6 5 31 31 H 1.09003 * 109.47077 * 300.00168 * 12 11 9 32 32 H 1.09003 * 109.47375 * 59.99576 * 12 11 9 33 33 H 1.09002 * 109.47138 * 299.99683 * 13 12 11 34 34 H 1.08996 * 109.47228 * 59.99753 * 13 12 11 35 35 H 1.08999 * 109.46958 * 299.99403 * 14 13 12 36 36 H 1.09001 * 109.46909 * 60.00064 * 14 13 12 37 37 H 0.97005 * 119.99855 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.07060 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5605 -1.6227 5 6 2.3657 0.3536 -2.6502 6 6 2.6775 -0.0778 -3.9271 7 6 2.8351 -1.4240 -4.1846 8 6 2.6799 -2.3516 -3.1528 9 6 2.8467 -3.7946 -3.4212 10 8 2.7115 -4.5993 -2.5213 11 8 3.1497 -4.2181 -4.6635 12 6 3.2992 -5.6498 -4.8539 13 6 3.6396 -5.9370 -6.3176 14 6 3.7965 -7.4457 -6.5182 15 16 4.1984 -7.7854 -8.2500 16 6 4.3181 -9.5425 -8.1974 17 1 4.1554 -10.0672 -7.2674 18 6 4.6224 -10.2523 -9.3506 19 7 4.8211 -9.6128 -10.4838 20 14 4.7485 -12.1152 -9.2950 21 1 4.4827 -12.5883 -7.9126 22 1 3.7504 -12.7069 -10.2215 23 1 6.1134 -12.5314 -9.7061 24 6 2.3708 -1.9088 -1.8650 25 1 -0.3633 0.6735 -0.7762 26 1 -0.3633 -1.0089 -0.1952 27 1 -0.3633 0.3356 0.9713 28 1 2.2430 1.4085 -2.4541 29 1 2.7977 0.6409 -4.7243 30 1 3.0781 -1.7595 -5.1821 31 1 4.1010 -6.0196 -4.2147 32 1 2.3667 -6.1504 -4.5931 33 1 2.8375 -5.5674 -6.9564 34 1 4.5719 -5.4365 -6.5787 35 1 4.5984 -7.8157 -5.8794 36 1 2.8638 -7.9458 -6.2572 37 1 5.0334 -10.1089 -11.2899 38 1 2.2541 -2.6206 -1.0612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805531863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:07 Heat of formation + Delta-G solvation = -133.505642 kcal Electronic energy + Delta-G solvation = -21360.012143 eV Core-core repulsion = 17805.200493 eV Total energy + Delta-G solvation = -3554.811650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.68095 -39.85282 -37.78549 -36.91790 -34.92796 -34.58216 -32.62639 -32.25978 -29.63483 -28.27627 -27.52237 -25.33367 -24.02027 -22.74756 -22.12087 -19.82340 -19.44679 -18.34463 -18.08425 -17.74269 -17.16235 -16.89758 -16.50537 -16.29381 -16.02835 -16.00199 -15.79688 -15.04921 -14.87413 -14.52245 -14.29790 -14.24492 -13.80173 -13.76582 -13.53580 -13.17469 -13.15267 -12.96261 -12.81444 -12.66338 -12.58653 -12.39462 -12.37733 -11.79518 -11.51731 -11.50230 -11.34218 -11.15859 -10.45397 -10.35062 -10.21624 -9.40403 -8.67720 -8.38166 -6.14489 -0.54317 -0.06808 0.83198 1.26570 1.33683 1.39117 1.41856 1.52766 1.74923 1.83783 2.27244 2.53728 2.91177 2.96679 3.27584 3.45951 3.75860 3.86417 3.94650 3.97736 4.05335 4.15019 4.24450 4.33687 4.34703 4.37456 4.52646 4.57739 4.69261 4.75608 4.95737 5.02519 5.09278 5.12214 5.17858 5.18091 5.37618 5.40690 5.62964 6.18200 6.58825 7.04734 8.71337 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.041611 B = 0.001685 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.730329 B =16617.501136 C =17096.564682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.398 4.602 3 O -0.917 6.917 4 C -0.479 4.479 5 C -0.036 4.036 6 C -0.147 4.147 7 C -0.030 4.030 8 C -0.156 4.156 9 C 0.510 3.490 10 O -0.525 6.525 11 O -0.354 6.354 12 C 0.082 3.918 13 C -0.087 4.087 14 C -0.091 4.091 15 S -0.187 6.187 16 C -0.539 4.539 17 H 0.075 0.925 18 C 0.015 3.985 19 N -0.907 5.907 20 Si 0.995 3.005 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.272 1.272 24 C 0.025 3.975 25 H 0.067 0.933 26 H 0.137 0.863 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.272 0.728 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 18.432 22.447 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.596 4.404 3 O -0.913 6.913 4 C -0.574 4.574 5 C -0.055 4.055 6 C -0.165 4.165 7 C -0.048 4.048 8 C -0.158 4.158 9 C 0.356 3.644 10 O -0.416 6.416 11 O -0.270 6.270 12 C 0.007 3.993 13 C -0.125 4.125 14 C -0.240 4.240 15 S 0.041 5.959 16 C -0.687 4.687 17 H 0.093 0.907 18 C -0.190 4.190 19 N -0.543 5.543 20 Si 0.817 3.183 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.197 1.197 24 C 0.006 3.994 25 H 0.086 0.914 26 H 0.155 0.845 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.356 19.130 22.324 30.306 hybrid contribution -0.808 -0.665 -1.267 1.643 sum -8.164 18.465 21.057 29.172 Atomic orbital electron populations 1.27764 1.20463 1.09449 1.07929 1.69055 0.86056 0.96567 0.88765 1.92992 1.75664 1.40448 1.82153 1.27966 1.13052 0.98693 1.17712 1.21578 0.91087 0.99949 0.92906 1.21507 1.01308 0.95940 0.97776 1.21890 0.90573 0.92866 0.99516 1.19334 1.10880 0.88767 0.96811 1.21391 0.72651 0.89941 0.80388 1.90822 1.48190 1.56735 1.45862 1.86490 1.80479 1.28485 1.31572 1.23083 1.02766 0.76265 0.97226 1.21107 1.03766 0.93389 0.94256 1.23067 1.03466 0.98433 0.99069 1.84645 1.92208 1.09670 1.09340 1.23097 1.55616 0.91348 0.98641 0.90682 1.26061 0.93846 1.05007 0.94054 1.70154 1.45695 1.38120 1.00376 0.84959 0.78254 0.76326 0.78798 1.18602 1.19732 1.19749 1.21222 0.88314 0.94426 0.95474 0.91387 0.84492 0.85842 0.85424 0.82789 0.83131 0.90417 0.90392 0.90270 0.90288 0.91215 0.91200 0.91938 0.80489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.96 10.70 113.37 1.21 -1.75 16 2 S 1.40 11.90 14.18 -56.49 -0.80 11.10 16 3 O -0.92 -20.21 16.89 -148.98 -2.52 -22.73 16 4 C -0.48 -6.32 5.60 22.23 0.12 -6.20 16 5 C -0.04 -0.58 9.44 22.33 0.21 -0.37 16 6 C -0.15 -2.16 10.03 22.23 0.22 -1.94 16 7 C -0.03 -0.50 9.62 22.54 0.22 -0.28 16 8 C -0.16 -2.85 5.87 -20.10 -0.12 -2.97 16 9 C 0.51 11.85 7.90 70.33 0.56 12.40 16 10 O -0.53 -13.96 16.14 19.94 0.32 -13.64 16 11 O -0.35 -8.71 9.47 -56.17 -0.53 -9.25 16 12 C 0.08 2.10 5.47 71.98 0.39 2.50 16 13 C -0.09 -2.61 5.60 30.59 0.17 -2.44 16 14 C -0.09 -3.48 5.67 71.98 0.41 -3.07 16 15 S -0.19 -9.69 21.44 -56.49 -1.21 -10.90 16 16 C -0.54 -30.57 9.50 67.95 0.65 -29.93 16 17 H 0.08 4.09 7.80 -2.91 -0.02 4.07 16 18 C 0.02 0.86 5.49 84.86 0.47 1.33 16 19 N -0.91 -54.03 13.22 21.65 0.29 -53.74 16 20 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 C 0.02 0.33 9.30 22.53 0.21 0.54 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.13 2.19 7.44 -2.91 -0.02 2.16 16 29 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 30 H 0.15 2.26 7.61 -2.91 -0.02 2.24 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.07 2.59 8.14 -2.40 -0.02 2.57 16 36 H 0.07 2.59 8.14 -2.40 -0.02 2.57 16 37 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 38 H 0.18 1.34 7.65 -2.91 -0.02 1.32 16 Total: -1.00 -80.45 362.55 3.36 -77.09 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.06 Total: 8.91 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 4.72 Total: -32.19 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.29 Total: -53.74 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -2.73 Total: -45.61 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.01 Total: 0.20 kcal Total: -80.45 3.36 -77.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805531863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.418 kcal (2) G-P(sol) polarization free energy of solvation -80.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds