Wall clock time and date at job start Tue Mar 31 2020 15:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 109.47285 * 2 1 4 4 C 1.76203 * 102.99681 * 109.05887 * 2 1 3 5 5 C 1.38387 * 119.92533 * 89.99947 * 4 2 1 6 6 C 1.38351 * 120.30372 * 179.72142 * 5 4 2 7 7 C 1.37967 * 120.14602 * 0.25214 * 6 5 4 8 8 C 1.39613 * 119.84959 * 0.02562 * 7 6 5 9 9 C 1.47726 * 120.14798 * 179.97438 * 8 7 6 10 10 O 1.21476 * 119.99910 * 179.97438 * 9 8 7 11 11 O 1.34710 * 120.00336 * 0.02562 * 9 8 7 12 12 C 1.45198 * 117.00382 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47372 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47123 * 180.02562 * 13 12 11 15 15 S 1.81004 * 109.46958 * 180.02562 * 14 13 12 16 16 C 1.76204 * 99.99881 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99781 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31635 * 120.00305 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00012 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47145 * 89.99808 * 20 18 16 22 22 H 1.48504 * 109.46964 * 209.99655 * 20 18 16 23 23 H 1.48496 * 109.47027 * 329.99634 * 20 18 16 24 24 C 1.37921 * 119.92490 * 270.27508 * 4 2 1 25 25 H 1.08996 * 109.47302 * 310.94262 * 1 2 3 26 26 H 1.08999 * 109.46828 * 70.94525 * 1 2 3 27 27 H 1.08998 * 109.47165 * 190.93979 * 1 2 3 28 28 H 1.08002 * 119.85220 * 0.02562 * 5 4 2 29 29 H 1.07998 * 119.92834 * 180.28046 * 6 5 4 30 30 H 1.07997 * 120.07396 * 179.97438 * 7 6 5 31 31 H 1.08994 * 109.46872 * 299.99805 * 12 11 9 32 32 H 1.08998 * 109.47176 * 59.99772 * 12 11 9 33 33 H 1.09006 * 109.46668 * 299.99992 * 13 12 11 34 34 H 1.08998 * 109.47020 * 59.99843 * 13 12 11 35 35 H 1.09006 * 109.47237 * 299.99515 * 14 13 12 36 36 H 1.08998 * 109.47405 * 59.99951 * 14 13 12 37 37 H 0.96997 * 120.00143 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.07489 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2103 -0.5606 1.6228 5 6 2.3655 -1.9139 1.8670 6 6 2.6823 -2.3623 3.1369 7 6 2.8405 -1.4619 4.1702 8 6 2.6796 -0.0957 3.9321 9 6 2.8469 0.8741 5.0338 10 8 2.7068 2.0623 4.8236 11 8 3.1559 0.4410 6.2714 12 6 3.3055 1.4500 7.3048 13 6 3.6530 0.7731 8.6321 14 6 3.8100 1.8362 9.7211 15 16 4.2218 1.0354 11.2912 16 6 4.3415 2.4505 12.3343 17 1 4.1728 3.4368 11.9277 18 6 4.6514 2.2976 13.6785 19 7 4.7413 3.3547 14.4577 20 14 4.9424 0.5916 14.3817 21 1 6.3824 0.2475 14.2661 22 1 4.5417 0.5706 15.8115 23 1 4.1344 -0.3995 13.6267 24 6 2.3594 0.3498 2.6480 25 1 -0.3634 0.6734 0.7762 26 1 -0.3633 0.3355 -0.9714 27 1 -0.3633 -1.0090 0.1950 28 1 2.2437 -2.6230 1.0615 29 1 2.8065 -3.4194 3.3196 30 1 3.0874 -1.8133 5.1611 31 1 4.1039 2.1383 7.0276 32 1 2.3714 2.0014 7.4121 33 1 2.8542 0.0850 8.9091 34 1 4.5869 0.2214 8.5251 35 1 4.6086 2.5246 9.4444 36 1 2.8758 2.3875 9.8280 37 1 4.9582 3.2479 15.3970 38 1 2.2340 1.4054 2.4569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805531864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:10 Heat of formation + Delta-G solvation = -109.234822 kcal Electronic energy + Delta-G solvation = -21477.296887 eV Core-core repulsion = 17923.537699 eV Total energy + Delta-G solvation = -3553.759188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77575 -39.14311 -36.76772 -36.21057 -33.70959 -32.47415 -31.96868 -31.60868 -29.28277 -26.95194 -25.68488 -24.50421 -23.38264 -21.56014 -21.31152 -18.98039 -17.64480 -17.45415 -17.30954 -16.72032 -16.40771 -15.78592 -15.56007 -15.30844 -15.02967 -14.80925 -14.61413 -14.33529 -14.02468 -13.44459 -13.33346 -13.18999 -12.86326 -12.75543 -12.60066 -12.52414 -12.34962 -11.88658 -11.56734 -11.26661 -11.12737 -11.01284 -10.89321 -10.71598 -10.41678 -10.28942 -9.85009 -9.82235 -9.57398 -9.04382 -8.93274 -8.64304 -7.00590 -6.31591 -4.05327 0.13771 0.52884 1.33285 2.05416 2.26544 2.39953 2.98214 3.19632 3.27319 3.41734 3.43112 3.52926 4.25794 4.28473 4.31147 4.53936 4.65418 4.68439 4.74427 4.75111 4.91565 4.99585 5.07181 5.07393 5.11266 5.31720 5.34743 5.47511 5.54998 5.64030 5.69651 5.74088 5.79547 5.99620 6.23243 6.29315 6.29344 6.52056 7.55117 7.91959 8.41376 9.13543 10.77789 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.036071 B = 0.001795 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.060755 B =15594.158557 C =16168.994476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.338 4.662 3 O -0.850 6.850 4 C -0.477 4.477 5 C -0.013 4.013 6 C -0.148 4.148 7 C -0.027 4.027 8 C -0.135 4.135 9 C 0.505 3.495 10 O -0.502 6.502 11 O -0.351 6.351 12 C 0.073 3.927 13 C -0.100 4.100 14 C -0.085 4.085 15 S -0.206 6.206 16 C -0.505 4.505 17 H 0.089 0.911 18 C 0.092 3.908 19 N -0.880 5.880 20 Si 0.862 3.138 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.238 1.238 24 C 0.009 3.991 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.271 0.729 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 -17.092 -32.591 37.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 1.534 4.466 3 O -0.846 6.846 4 C -0.573 4.573 5 C -0.032 4.032 6 C -0.167 4.167 7 C -0.045 4.045 8 C -0.138 4.138 9 C 0.349 3.651 10 O -0.391 6.391 11 O -0.268 6.268 12 C -0.002 4.002 13 C -0.139 4.139 14 C -0.233 4.233 15 S 0.022 5.978 16 C -0.653 4.653 17 H 0.107 0.893 18 C -0.117 4.117 19 N -0.516 5.516 20 Si 0.687 3.313 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.162 1.162 24 C -0.010 4.010 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.620 -17.450 -32.873 37.801 hybrid contribution -0.861 2.243 2.213 3.266 sum -7.481 -15.207 -30.660 35.032 Atomic orbital electron populations 1.27781 1.22208 1.08110 1.07587 1.69503 0.86169 0.99906 0.91059 1.93166 1.73139 1.37114 1.81162 1.27787 1.13487 0.99567 1.16459 1.21141 0.91320 0.93471 0.97279 1.21344 1.02000 1.00448 0.92891 1.21786 0.90755 0.91551 1.00447 1.19297 1.08862 0.93220 0.92393 1.21093 0.73668 0.87572 0.82791 1.90867 1.46653 1.17779 1.83837 1.86485 1.80344 1.41760 1.18166 1.23284 1.02491 0.89407 0.85029 1.21331 1.03672 0.98562 0.90301 1.22949 1.03992 0.99841 0.96533 1.84141 1.92627 1.17432 1.03591 1.22121 1.55381 0.92063 0.95702 0.89293 1.24797 0.93533 0.97485 0.95841 1.69938 1.46354 1.29130 1.06218 0.86666 0.80253 0.84873 0.79520 1.19307 1.20020 1.16173 1.21268 0.88956 1.00702 0.90111 0.89776 0.87439 0.86927 0.83797 0.84206 0.83665 0.90801 0.90854 0.90216 0.90193 0.90958 0.90939 0.91906 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -1.98 10.70 101.05 1.08 -0.90 16 2 S 1.34 6.36 14.18 -107.50 -1.52 4.84 16 3 O -0.85 -10.51 16.90 -35.23 -0.60 -11.10 16 4 C -0.48 -3.36 5.60 -39.64 -0.22 -3.58 16 5 C -0.01 -0.05 9.74 -39.48 -0.38 -0.44 16 6 C -0.15 -0.79 10.03 -39.64 -0.40 -1.18 16 7 C -0.03 -0.23 9.62 -39.17 -0.38 -0.60 16 8 C -0.14 -1.56 5.87 -104.98 -0.62 -2.18 16 9 C 0.50 7.28 7.90 34.61 0.27 7.55 16 10 O -0.50 -8.76 16.14 -19.25 -0.31 -9.07 16 11 O -0.35 -4.88 9.47 -40.52 -0.38 -5.26 16 12 C 0.07 1.05 5.48 37.16 0.20 1.25 16 13 C -0.10 -1.54 5.60 -26.73 -0.15 -1.69 16 14 C -0.08 -1.63 5.67 37.16 0.21 -1.42 16 15 S -0.21 -4.97 19.41 -107.50 -2.09 -7.06 16 16 C -0.51 -14.67 10.04 30.94 0.31 -14.36 16 17 H 0.09 2.75 8.03 -52.48 -0.42 2.33 16 18 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 19 N -0.88 -26.73 13.97 55.49 0.78 -25.95 16 20 Si 0.86 21.42 27.74 -169.99 -4.72 16.70 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.24 -5.76 6.74 56.52 0.38 -5.38 16 24 C 0.01 0.10 8.99 -39.17 -0.35 -0.25 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.11 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.11 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.14 -0.12 8.06 -52.49 -0.42 -0.54 16 29 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 30 H 0.15 1.08 7.61 -52.49 -0.40 0.68 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.39 8.14 -51.91 -0.42 0.97 16 36 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 37 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.14 1.94 7.05 -52.48 -0.37 1.57 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -39.75 359.88 -8.93 -48.68 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.00 Total: -2.00 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.52 Total: -15.20 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.78 Total: -25.95 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -1.29 Total: -25.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.72 Total: 16.70 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -3.61 Total: -2.22 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.75 -8.93 -48.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805531864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.552 kcal (2) G-P(sol) polarization free energy of solvation -39.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds