Wall clock time and date at job start Tue Mar 31 2020 15:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 109.47285 * 2 1 4 4 C 1.76203 * 102.99681 * 109.05887 * 2 1 3 5 5 C 1.38387 * 119.92533 * 89.99947 * 4 2 1 6 6 C 1.38351 * 120.30372 * 179.72142 * 5 4 2 7 7 C 1.37967 * 120.14602 * 0.25214 * 6 5 4 8 8 C 1.39613 * 119.84959 * 0.02562 * 7 6 5 9 9 C 1.47726 * 120.14798 * 179.97438 * 8 7 6 10 10 O 1.21476 * 119.99910 * 179.97438 * 9 8 7 11 11 O 1.34710 * 120.00336 * 0.02562 * 9 8 7 12 12 C 1.45198 * 117.00382 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47372 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47123 * 180.02562 * 13 12 11 15 15 S 1.81004 * 109.46958 * 180.02562 * 14 13 12 16 16 C 1.76204 * 99.99881 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99781 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31635 * 120.00305 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00012 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47145 * 89.99808 * 20 18 16 22 22 H 1.48504 * 109.46964 * 209.99655 * 20 18 16 23 23 H 1.48496 * 109.47027 * 329.99634 * 20 18 16 24 24 C 1.37921 * 119.92490 * 270.27508 * 4 2 1 25 25 H 1.08996 * 109.47302 * 310.94262 * 1 2 3 26 26 H 1.08999 * 109.46828 * 70.94525 * 1 2 3 27 27 H 1.08998 * 109.47165 * 190.93979 * 1 2 3 28 28 H 1.08002 * 119.85220 * 0.02562 * 5 4 2 29 29 H 1.07998 * 119.92834 * 180.28046 * 6 5 4 30 30 H 1.07997 * 120.07396 * 179.97438 * 7 6 5 31 31 H 1.08994 * 109.46872 * 299.99805 * 12 11 9 32 32 H 1.08998 * 109.47176 * 59.99772 * 12 11 9 33 33 H 1.09006 * 109.46668 * 299.99992 * 13 12 11 34 34 H 1.08998 * 109.47020 * 59.99843 * 13 12 11 35 35 H 1.09006 * 109.47237 * 299.99515 * 14 13 12 36 36 H 1.08998 * 109.47405 * 59.99951 * 14 13 12 37 37 H 0.96997 * 120.00143 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.07489 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2103 -0.5606 1.6228 5 6 2.3655 -1.9139 1.8670 6 6 2.6823 -2.3623 3.1369 7 6 2.8405 -1.4619 4.1702 8 6 2.6796 -0.0957 3.9321 9 6 2.8469 0.8741 5.0338 10 8 2.7068 2.0623 4.8236 11 8 3.1559 0.4410 6.2714 12 6 3.3055 1.4500 7.3048 13 6 3.6530 0.7731 8.6321 14 6 3.8100 1.8362 9.7211 15 16 4.2218 1.0354 11.2912 16 6 4.3415 2.4505 12.3343 17 1 4.1728 3.4368 11.9277 18 6 4.6514 2.2976 13.6785 19 7 4.7413 3.3547 14.4577 20 14 4.9424 0.5916 14.3817 21 1 6.3824 0.2475 14.2661 22 1 4.5417 0.5706 15.8115 23 1 4.1344 -0.3995 13.6267 24 6 2.3594 0.3498 2.6480 25 1 -0.3634 0.6734 0.7762 26 1 -0.3633 0.3355 -0.9714 27 1 -0.3633 -1.0090 0.1950 28 1 2.2437 -2.6230 1.0615 29 1 2.8065 -3.4194 3.3196 30 1 3.0874 -1.8133 5.1611 31 1 4.1039 2.1383 7.0276 32 1 2.3714 2.0014 7.4121 33 1 2.8542 0.0850 8.9091 34 1 4.5869 0.2214 8.5251 35 1 4.6086 2.5246 9.4444 36 1 2.8758 2.3875 9.8280 37 1 4.9582 3.2479 15.3970 38 1 2.2340 1.4054 2.4569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805531864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:10 Heat of formation + Delta-G solvation = -137.227103 kcal Electronic energy + Delta-G solvation = -21478.510724 eV Core-core repulsion = 17923.537699 eV Total energy + Delta-G solvation = -3554.973025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82319 -39.84652 -37.95731 -36.96372 -35.06150 -34.71637 -32.64588 -32.19245 -29.63534 -28.38191 -27.79086 -25.39621 -23.99430 -22.87251 -22.22336 -19.90042 -19.51698 -18.50748 -18.06544 -17.91370 -17.14760 -17.09993 -16.52008 -16.19602 -16.16271 -16.03594 -15.80629 -15.05888 -14.95768 -14.59533 -14.50022 -14.44285 -14.08790 -13.79180 -13.52221 -13.42197 -13.18351 -13.07240 -12.89304 -12.71313 -12.52586 -12.51185 -12.31284 -11.90054 -11.73223 -11.66574 -11.37552 -11.19378 -10.65920 -10.43095 -10.16817 -9.46636 -9.04500 -8.54814 -6.27892 -0.50530 -0.10963 0.88752 0.99777 1.28475 1.31187 1.33083 1.47135 1.72077 1.79518 2.22484 2.56373 2.61419 2.83008 2.93692 3.38653 3.72930 3.73320 3.83735 3.97415 4.00638 4.15273 4.18660 4.27002 4.30247 4.38549 4.53931 4.55822 4.59487 4.74979 4.90545 4.94698 5.07425 5.15205 5.18029 5.20420 5.28592 5.66128 5.76568 6.06992 6.43704 6.88122 8.58351 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.036071 B = 0.001795 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.060755 B =15594.158557 C =16168.994476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.412 4.588 3 O -0.933 6.933 4 C -0.484 4.484 5 C 0.013 3.987 6 C -0.137 4.137 7 C -0.032 4.032 8 C -0.167 4.167 9 C 0.502 3.498 10 O -0.548 6.548 11 O -0.343 6.343 12 C 0.077 3.923 13 C -0.084 4.084 14 C -0.077 4.077 15 S -0.198 6.198 16 C -0.529 4.529 17 H 0.049 0.951 18 C 0.036 3.964 19 N -0.922 5.922 20 Si 0.929 3.071 21 H -0.260 1.260 22 H -0.262 1.262 23 H -0.225 1.225 24 C -0.023 4.023 25 H 0.053 0.947 26 H 0.122 0.878 27 H 0.151 0.849 28 H 0.211 0.789 29 H 0.184 0.816 30 H 0.152 0.848 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.277 0.723 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 -22.438 -34.618 42.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 1.609 4.391 3 O -0.929 6.929 4 C -0.579 4.579 5 C -0.005 4.005 6 C -0.155 4.155 7 C -0.051 4.051 8 C -0.169 4.169 9 C 0.349 3.651 10 O -0.440 6.440 11 O -0.259 6.259 12 C 0.001 3.999 13 C -0.122 4.122 14 C -0.225 4.225 15 S 0.030 5.970 16 C -0.677 4.677 17 H 0.067 0.933 18 C -0.169 4.169 19 N -0.560 5.560 20 Si 0.749 3.251 21 H -0.184 1.184 22 H -0.187 1.187 23 H -0.149 1.149 24 C -0.042 4.042 25 H 0.073 0.927 26 H 0.140 0.860 27 H 0.169 0.831 28 H 0.228 0.772 29 H 0.201 0.799 30 H 0.170 0.830 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.147 -22.802 -34.903 42.299 hybrid contribution -0.791 3.888 2.666 4.780 sum -7.938 -18.914 -32.237 38.209 Atomic orbital electron populations 1.27799 1.20644 1.09871 1.07456 1.68416 0.85744 0.96454 0.88444 1.93028 1.76038 1.41258 1.82555 1.28065 1.13332 1.00665 1.15826 1.21945 0.87106 0.92682 0.98757 1.21914 0.99603 1.01871 0.92146 1.22004 0.90696 0.90266 1.02093 1.19252 1.12262 0.94170 0.91230 1.21828 0.72300 0.87790 0.83190 1.90835 1.49039 1.19787 1.84341 1.86471 1.80295 1.41114 1.18067 1.23098 1.02335 0.89442 0.85004 1.21136 1.04640 0.97296 0.89164 1.22977 1.03669 1.00718 0.95149 1.83721 1.92835 1.15452 1.05022 1.22361 1.55482 0.92659 0.97181 0.93298 1.25842 0.92961 1.01956 0.96122 1.70046 1.47256 1.31747 1.06922 0.85675 0.80642 0.79508 0.79272 1.18425 1.18675 1.14870 1.21111 0.91792 0.99641 0.91668 0.92724 0.85991 0.83064 0.77222 0.79921 0.83007 0.91163 0.91081 0.89130 0.89163 0.91256 0.91173 0.91319 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.82 10.70 113.37 1.21 -1.60 16 2 S 1.41 11.42 14.18 -56.49 -0.80 10.62 16 3 O -0.93 -24.46 16.90 -148.98 -2.52 -26.98 16 4 C -0.48 -5.94 5.60 22.23 0.12 -5.82 16 5 C 0.01 0.04 9.74 22.33 0.22 0.26 16 6 C -0.14 -0.76 10.03 22.23 0.22 -0.54 16 7 C -0.03 -0.47 9.62 22.54 0.22 -0.25 16 8 C -0.17 -3.95 5.87 -20.10 -0.12 -4.07 16 9 C 0.50 15.40 7.90 70.33 0.56 15.96 16 10 O -0.55 -20.94 16.14 19.91 0.32 -20.62 16 11 O -0.34 -9.65 9.47 -56.19 -0.53 -10.18 16 12 C 0.08 2.24 5.48 71.98 0.39 2.63 16 13 C -0.08 -2.50 5.60 30.59 0.17 -2.33 16 14 C -0.08 -2.95 5.67 71.98 0.41 -2.55 16 15 S -0.20 -9.47 19.41 -56.49 -1.10 -10.57 16 16 C -0.53 -31.52 10.04 67.95 0.68 -30.84 16 17 H 0.05 3.19 8.03 -2.91 -0.02 3.16 16 18 C 0.04 2.13 5.50 84.86 0.47 2.59 16 19 N -0.92 -57.27 13.97 21.65 0.30 -56.97 16 20 Si 0.93 43.82 27.74 68.60 1.90 45.73 16 21 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.23 -10.12 6.74 99.48 0.67 -9.45 16 24 C -0.02 -0.54 8.99 22.53 0.20 -0.34 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.15 -0.31 8.14 -2.39 -0.02 -0.32 16 28 H 0.21 -2.13 8.06 -2.91 -0.02 -2.16 16 29 H 0.18 -0.44 8.06 -2.91 -0.02 -0.46 16 30 H 0.15 1.91 7.61 -2.91 -0.02 1.89 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 2.54 8.14 -2.38 -0.02 2.53 16 34 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.07 2.74 8.14 -2.40 -0.02 2.72 16 37 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.10 3.13 7.05 -2.91 -0.02 3.11 16 Total: -1.00 -94.85 359.88 3.36 -91.49 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.03 Total: 4.38 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 4.76 Total: -26.89 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.30 Total: -56.97 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -2.73 Total: -57.79 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.73 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.90 Total: 0.05 kcal Total: -94.85 3.36 -91.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805531864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.738 kcal (2) G-P(sol) polarization free energy of solvation -94.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds