Wall clock time and date at job start Tue Mar 31 2020 15:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99616 * 2 1 4 4 H 1.48503 * 109.47062 * 269.99934 * 3 2 1 5 5 H 1.48494 * 109.47401 * 29.99888 * 3 2 1 6 6 H 1.48505 * 109.46941 * 150.00025 * 3 2 1 7 7 C 1.37868 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00001 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00233 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46540 * 180.02562 * 10 9 7 12 12 O 1.45208 * 109.46666 * 180.02562 * 11 10 9 13 13 C 1.34232 * 116.99618 * 180.02562 * 12 11 10 14 14 O 1.20826 * 120.00236 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00079 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47466 * 179.97438 * 15 13 12 17 17 S 1.81401 * 109.47149 * 179.97438 * 16 15 13 18 18 C 1.76206 * 102.99841 * 179.97438 * 17 16 15 19 19 C 1.38997 * 120.07349 * 359.73052 * 18 17 16 20 20 C 1.38066 * 119.94719 * 179.71622 * 19 18 17 21 21 C 1.38304 * 120.09113 * 0.55531 * 20 19 18 22 22 C 1.38403 * 120.14649 * 359.72108 * 21 20 19 23 23 Cl 1.73602 * 119.97312 * 180.02562 * 22 21 20 24 24 C 1.38221 * 120.05087 * 359.97438 * 22 21 20 25 25 H 0.96999 * 120.00566 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46701 * 60.00379 * 9 7 2 27 27 H 1.08995 * 109.46653 * 300.00078 * 9 7 2 28 28 H 1.08998 * 109.47062 * 60.00644 * 10 9 7 29 29 H 1.08992 * 109.47794 * 300.00027 * 10 9 7 30 30 H 1.08998 * 109.47407 * 60.00795 * 11 10 9 31 31 H 1.08996 * 109.47314 * 299.99723 * 11 10 9 32 32 H 1.09002 * 109.47120 * 59.99588 * 15 13 12 33 33 H 1.08998 * 109.46862 * 300.00390 * 15 13 12 34 34 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 35 35 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 36 36 H 1.08010 * 120.02826 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.95725 * 180.24810 * 20 19 18 38 38 H 1.07995 * 119.92861 * 179.73941 * 21 20 19 39 39 H 1.08007 * 120.04185 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6364 0.0014 11 6 5.5516 -2.6363 0.0014 12 8 6.0356 -4.0054 0.0021 13 6 7.3664 -4.1812 0.0028 14 8 8.1024 -3.2230 0.0023 15 6 7.9425 -5.5737 0.0030 16 6 9.4703 -5.4936 0.0032 17 16 10.1637 -7.1698 0.0042 18 6 11.9017 -6.8798 0.0035 19 6 12.3908 -5.5787 -0.0033 20 6 13.7531 -5.3545 0.0021 21 6 14.6317 -6.4226 0.0026 22 6 14.1490 -7.7197 0.0035 23 17 15.2559 -9.0570 0.0048 24 6 12.7863 -7.9511 0.0045 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8745 -0.6807 -0.8905 28 1 3.6579 -3.1512 -0.8879 29 1 3.6586 -3.1493 0.8920 30 1 5.9149 -2.1217 0.8910 31 1 5.9149 -2.1234 -0.8890 32 1 7.6069 -6.1058 -0.8871 33 1 7.6060 -6.1059 0.8928 34 1 9.8062 -4.9613 0.8931 35 1 9.8063 -4.9615 -0.8869 36 1 11.7056 -4.7438 -0.0085 37 1 14.1332 -4.3436 0.0009 38 1 15.6968 -6.2441 0.0026 39 1 12.4097 -8.9634 0.0056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808701554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:55 Heat of formation + Delta-G solvation = -89.496122 kcal Electronic energy + Delta-G solvation = -20984.451694 eV Core-core repulsion = 17429.504734 eV Total energy + Delta-G solvation = -3554.946960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48563 -39.63144 -36.96817 -36.84434 -34.15656 -33.61325 -31.88241 -31.69738 -31.28677 -27.88362 -25.74612 -23.56642 -23.20860 -22.74816 -20.83379 -20.22705 -18.44983 -17.92940 -17.02305 -16.90329 -16.73979 -16.18716 -16.00207 -15.42380 -15.38546 -14.44642 -14.27034 -14.24978 -14.01242 -13.94730 -13.04177 -13.00193 -12.73573 -12.56342 -12.33773 -12.26040 -12.02423 -11.94123 -11.90053 -11.45975 -11.11869 -11.02486 -10.73091 -10.72258 -10.52394 -10.28814 -10.06220 -9.86742 -9.77260 -9.37982 -9.29053 -8.60356 -7.95753 -6.10404 -4.09816 0.49290 0.63802 0.78109 1.61581 1.80943 2.09596 2.75625 2.97940 3.26643 3.34575 3.37271 4.08310 4.22667 4.35094 4.39483 4.45134 4.51340 4.67974 4.79132 4.91817 4.99727 5.11158 5.18259 5.22662 5.30346 5.37914 5.40032 5.51304 5.62858 5.75667 5.78368 6.10212 6.25449 6.32645 6.57525 6.73423 7.15788 7.27219 7.65106 7.72694 8.45882 8.93650 9.50907 11.02714 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.043082 B = 0.001528 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.764719 B =18325.654457 C =18939.065191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.102 4.102 11 C 0.066 3.934 12 O -0.353 6.353 13 C 0.465 3.535 14 O -0.513 6.513 15 C -0.101 4.101 16 C -0.102 4.102 17 S -0.091 6.091 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.085 4.085 21 C -0.117 4.117 22 C -0.017 4.017 23 Cl -0.065 7.065 24 C -0.093 4.093 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.830 -17.042 0.027 35.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.140 4.140 11 C -0.007 4.007 12 O -0.269 6.269 13 C 0.306 3.694 14 O -0.402 6.402 15 C -0.140 4.140 16 C -0.251 4.251 17 S 0.155 5.845 18 C -0.186 4.186 19 C -0.153 4.153 20 C -0.105 4.105 21 C -0.139 4.139 22 C -0.045 4.045 23 Cl -0.036 7.036 24 C -0.118 4.118 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 30.208 -17.755 0.030 35.039 hybrid contribution 1.216 2.174 -0.023 2.491 sum 31.424 -15.581 0.007 35.075 Atomic orbital electron populations 1.69904 1.06280 1.27013 1.50725 1.25008 0.94750 0.99159 0.94423 0.86788 0.80361 0.83612 0.78595 1.20206 1.21237 1.19017 1.21052 0.89015 0.94702 1.51346 0.90767 1.19521 0.97583 0.91015 0.96674 1.21573 0.88621 1.00861 1.02927 1.23549 0.97180 0.77775 1.02184 1.86502 1.22898 1.34582 1.82904 1.23235 0.81671 0.91730 0.72735 1.90670 1.60726 1.43167 1.45682 1.20971 0.92465 0.93048 1.07507 1.23509 0.97295 0.96499 1.07755 1.85522 0.95991 1.11084 1.91930 1.21667 0.97302 0.95851 1.03732 1.21400 0.96720 0.95473 1.01703 1.21076 0.92414 0.99198 0.97788 1.21120 1.00909 0.90469 1.01382 1.20787 0.90384 0.89153 1.04197 1.98388 1.62359 1.46002 1.96855 1.20595 0.90444 0.99016 1.01721 0.92610 0.96281 0.96712 0.91456 0.91435 0.91404 0.91419 0.86437 0.86435 0.88034 0.88030 0.84781 0.84477 0.84592 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -1.96 5.53 -26.73 -0.15 -2.11 16 11 C 0.07 1.09 5.47 37.16 0.20 1.29 16 12 O -0.35 -5.16 10.22 -39.26 -0.40 -5.56 16 13 C 0.47 5.83 7.96 36.00 0.29 6.12 16 14 O -0.51 -7.72 15.73 -18.75 -0.29 -8.02 16 15 C -0.10 -0.81 5.82 -27.89 -0.16 -0.98 16 16 C -0.10 -0.78 3.62 37.16 0.13 -0.65 16 17 S -0.09 -0.70 21.92 -107.50 -2.36 -3.05 16 18 C -0.07 -0.58 6.11 -39.05 -0.24 -0.82 16 19 C -0.13 -0.96 9.36 -39.36 -0.37 -1.33 16 20 C -0.08 -0.54 10.04 -39.62 -0.40 -0.94 16 21 C -0.12 -0.76 9.83 -39.50 -0.39 -1.15 16 22 C -0.02 -0.13 6.32 -39.53 -0.25 -0.37 16 23 Cl -0.06 -0.46 28.95 -51.86 -1.50 -1.96 16 24 C -0.09 -0.73 9.57 -39.33 -0.38 -1.10 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 31 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 32 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.80 7.72 -51.92 -0.40 0.39 16 35 H 0.10 0.79 7.69 -51.92 -0.40 0.40 16 36 H 0.13 0.91 5.88 -52.48 -0.31 0.60 16 37 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -31.58 363.18 -10.49 -42.08 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -5.27 Total: -3.47 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.25 Total: -15.54 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.77 Total: -26.68 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.70 Total: -13.58 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -2.36 Total: -3.05 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.58 -10.49 -42.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808701554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.420 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds