Wall clock time and date at job start Tue Mar 31 2020 15:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99616 * 2 1 4 4 H 1.48503 * 109.47062 * 269.99934 * 3 2 1 5 5 H 1.48494 * 109.47401 * 29.99888 * 3 2 1 6 6 H 1.48505 * 109.46941 * 150.00025 * 3 2 1 7 7 C 1.37868 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00001 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00233 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46540 * 180.02562 * 10 9 7 12 12 O 1.45208 * 109.46666 * 180.02562 * 11 10 9 13 13 C 1.34232 * 116.99618 * 180.02562 * 12 11 10 14 14 O 1.20826 * 120.00236 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00079 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47466 * 179.97438 * 15 13 12 17 17 S 1.81401 * 109.47149 * 179.97438 * 16 15 13 18 18 C 1.76206 * 102.99841 * 179.97438 * 17 16 15 19 19 C 1.38997 * 120.07349 * 359.73052 * 18 17 16 20 20 C 1.38066 * 119.94719 * 179.71622 * 19 18 17 21 21 C 1.38304 * 120.09113 * 0.55531 * 20 19 18 22 22 C 1.38403 * 120.14649 * 359.72108 * 21 20 19 23 23 Cl 1.73602 * 119.97312 * 180.02562 * 22 21 20 24 24 C 1.38221 * 120.05087 * 359.97438 * 22 21 20 25 25 H 0.96999 * 120.00566 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46701 * 60.00379 * 9 7 2 27 27 H 1.08995 * 109.46653 * 300.00078 * 9 7 2 28 28 H 1.08998 * 109.47062 * 60.00644 * 10 9 7 29 29 H 1.08992 * 109.47794 * 300.00027 * 10 9 7 30 30 H 1.08998 * 109.47407 * 60.00795 * 11 10 9 31 31 H 1.08996 * 109.47314 * 299.99723 * 11 10 9 32 32 H 1.09002 * 109.47120 * 59.99588 * 15 13 12 33 33 H 1.08998 * 109.46862 * 300.00390 * 15 13 12 34 34 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 35 35 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 36 36 H 1.08010 * 120.02826 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.95725 * 180.24810 * 20 19 18 38 38 H 1.07995 * 119.92861 * 179.73941 * 21 20 19 39 39 H 1.08007 * 120.04185 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6364 0.0014 11 6 5.5516 -2.6363 0.0014 12 8 6.0356 -4.0054 0.0021 13 6 7.3664 -4.1812 0.0028 14 8 8.1024 -3.2230 0.0023 15 6 7.9425 -5.5737 0.0030 16 6 9.4703 -5.4936 0.0032 17 16 10.1637 -7.1698 0.0042 18 6 11.9017 -6.8798 0.0035 19 6 12.3908 -5.5787 -0.0033 20 6 13.7531 -5.3545 0.0021 21 6 14.6317 -6.4226 0.0026 22 6 14.1490 -7.7197 0.0035 23 17 15.2559 -9.0570 0.0048 24 6 12.7863 -7.9511 0.0045 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8745 -0.6807 -0.8905 28 1 3.6579 -3.1512 -0.8879 29 1 3.6586 -3.1493 0.8920 30 1 5.9149 -2.1217 0.8910 31 1 5.9149 -2.1234 -0.8890 32 1 7.6069 -6.1058 -0.8871 33 1 7.6060 -6.1059 0.8928 34 1 9.8062 -4.9613 0.8931 35 1 9.8063 -4.9615 -0.8869 36 1 11.7056 -4.7438 -0.0085 37 1 14.1332 -4.3436 0.0009 38 1 15.6968 -6.2441 0.0026 39 1 12.4097 -8.9634 0.0056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808701554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:55 Heat of formation + Delta-G solvation = -104.435150 kcal Electronic energy + Delta-G solvation = -20985.099499 eV Core-core repulsion = 17429.504734 eV Total energy + Delta-G solvation = -3555.594765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55663 -40.14384 -38.01126 -37.49613 -35.93698 -34.39435 -33.80655 -32.20911 -31.82810 -29.56080 -26.70497 -24.69846 -23.97664 -23.55551 -22.10485 -21.63564 -19.08930 -18.95162 -18.84057 -17.93582 -17.56791 -17.11986 -16.54238 -16.34369 -16.28731 -15.98634 -15.31714 -15.05469 -14.82487 -14.70303 -14.66824 -14.07000 -13.90267 -13.79064 -13.49336 -12.93535 -12.87073 -12.83421 -12.59870 -12.51721 -12.51480 -12.13456 -12.02455 -11.99684 -11.76770 -11.47922 -11.39251 -11.35380 -11.29511 -10.81028 -10.77876 -9.91429 -8.52054 -8.30441 -6.35698 -0.04100 0.11355 0.17863 1.06878 1.11409 1.23178 1.36648 1.38296 1.49792 1.75701 2.35358 2.45770 3.04835 3.41166 3.72095 3.74947 3.76230 3.94460 4.00824 4.02542 4.03386 4.28141 4.36402 4.39750 4.41179 4.52436 4.70804 4.71622 4.74282 4.75974 4.95788 4.98115 5.13162 5.25353 5.33569 5.48773 5.52018 5.61665 5.62402 6.25370 6.64081 6.72770 7.29044 8.86086 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.043082 B = 0.001528 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.764719 B =18325.654457 C =18939.065191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.536 4.536 8 H 0.035 0.965 9 C -0.010 4.010 10 C -0.094 4.094 11 C 0.075 3.925 12 O -0.358 6.358 13 C 0.466 3.534 14 O -0.539 6.539 15 C -0.092 4.092 16 C -0.098 4.098 17 S -0.089 6.089 18 C -0.087 4.087 19 C -0.138 4.138 20 C -0.085 4.085 21 C -0.119 4.119 22 C -0.026 4.026 23 Cl -0.065 7.065 24 C -0.104 4.104 25 H 0.267 0.733 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.317 -16.641 0.014 37.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.574 4.574 8 H 0.054 0.946 9 C -0.047 4.047 10 C -0.132 4.132 11 C 0.002 3.998 12 O -0.275 6.275 13 C 0.309 3.691 14 O -0.429 6.429 15 C -0.131 4.131 16 C -0.246 4.246 17 S 0.157 5.843 18 C -0.200 4.200 19 C -0.162 4.162 20 C -0.105 4.105 21 C -0.140 4.140 22 C -0.055 4.055 23 Cl -0.036 7.036 24 C -0.128 4.128 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 32.720 -17.384 0.017 37.051 hybrid contribution 0.453 1.934 -0.020 1.986 sum 33.173 -15.451 -0.003 36.594 Atomic orbital electron populations 1.70060 1.08312 1.28254 1.52365 1.26000 0.95617 1.03518 0.94001 0.85666 0.79553 0.78209 0.79285 1.19098 1.20950 1.16867 1.21426 0.91801 0.93361 1.50792 0.94649 1.19451 0.94240 0.93822 0.97205 1.21328 0.90940 0.98294 1.02613 1.23185 0.95015 0.79019 1.02603 1.86489 1.24461 1.33212 1.83318 1.24030 0.80518 0.93156 0.71429 1.90663 1.60904 1.44435 1.46891 1.21062 0.92408 0.90276 1.09326 1.23438 0.96955 0.96613 1.07600 1.85454 0.96066 1.10709 1.92102 1.21777 0.97432 0.96278 1.04481 1.21565 0.97451 0.95352 1.01835 1.21374 0.91980 1.00312 0.96844 1.21392 1.01982 0.90075 1.00522 1.20926 0.90357 0.89644 1.04530 1.98386 1.62253 1.46104 1.96874 1.20699 0.90774 0.99231 1.02105 0.92411 0.95612 0.95713 0.91824 0.91847 0.91044 0.90980 0.84517 0.84522 0.88257 0.88240 0.84410 0.82243 0.82812 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.12 13.96 21.44 0.30 -58.82 16 2 C 0.01 0.33 5.47 84.65 0.46 0.79 16 3 Si 0.95 43.48 27.47 68.60 1.88 45.36 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.25 -10.35 6.54 99.48 0.65 -9.69 16 7 C -0.54 -30.52 9.66 25.60 0.25 -30.27 16 8 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.54 5.53 30.59 0.17 -3.37 16 11 C 0.08 2.34 5.47 71.98 0.39 2.74 16 12 O -0.36 -9.85 10.22 -51.44 -0.53 -10.38 16 13 C 0.47 10.78 7.96 71.23 0.57 11.35 16 14 O -0.54 -15.30 15.73 21.97 0.35 -14.96 16 15 C -0.09 -1.27 5.82 29.85 0.17 -1.10 16 16 C -0.10 -1.33 3.62 71.98 0.26 -1.07 16 17 S -0.09 -1.23 21.92 -56.49 -1.24 -2.47 16 18 C -0.09 -1.30 6.11 22.62 0.14 -1.17 16 19 C -0.14 -1.86 9.36 22.41 0.21 -1.65 16 20 C -0.09 -0.93 10.04 22.24 0.22 -0.70 16 21 C -0.12 -1.34 9.83 22.32 0.22 -1.12 16 22 C -0.03 -0.36 6.32 22.31 0.14 -0.22 16 23 Cl -0.07 -0.86 28.95 -2.72 -0.08 -0.93 16 24 C -0.10 -1.53 9.57 22.43 0.21 -1.32 16 25 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 26 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 27 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 31 H 0.07 2.19 8.13 -2.39 -0.02 2.17 16 32 H 0.14 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 1.40 7.72 -2.39 -0.02 1.38 16 35 H 0.10 1.40 7.69 -2.39 -0.02 1.38 16 36 H 0.14 1.69 5.88 -2.91 -0.02 1.67 16 37 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -68.32 363.18 5.22 -63.10 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.99 Total: 6.52 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 3.54 Total: -27.42 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.30 Total: -58.82 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.18 Total: -25.34 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -1.24 Total: -2.47 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.93 kcal Total: -68.32 5.22 -63.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808701554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.335 kcal (2) G-P(sol) polarization free energy of solvation -68.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds