Wall clock time and date at job start Tue Mar 31 2020 15:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86798 * 119.99938 * 2 1 4 4 H 1.48503 * 109.47128 * 269.99999 * 3 2 1 5 5 H 1.48495 * 109.47324 * 30.00028 * 3 2 1 6 6 H 1.48501 * 109.46923 * 150.00222 * 3 2 1 7 7 C 1.39928 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00372 * 162.61812 * 7 2 1 9 9 C 1.41443 * 120.00228 * 342.61254 * 7 2 1 10 10 C 1.40787 * 120.17947 * 154.90040 * 9 7 2 11 11 C 1.37715 * 120.05184 * 180.02562 * 10 9 7 12 12 C 1.38361 * 120.41993 * 359.75321 * 11 10 9 13 13 C 1.39922 * 120.34837 * 0.50485 * 12 11 10 14 14 C 1.47774 * 120.02878 * 179.76921 * 13 12 11 15 15 O 1.21458 * 120.00055 * 179.72694 * 14 13 12 16 16 O 1.34704 * 119.99723 * 359.72297 * 14 13 12 17 17 C 1.45206 * 116.99910 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47006 * 180.02562 * 17 16 14 19 19 C 1.30909 * 121.83908 * 359.97438 * 18 17 16 20 20 S 1.75784 * 109.81502 * 180.02562 * 19 18 17 21 21 C 1.76247 * 90.70204 * 359.97438 * 20 19 18 22 22 N 1.32353 * 141.95321 * 179.97438 * 21 20 19 23 23 C 1.33873 * 109.13840 * 180.02562 * 22 21 20 24 24 C 1.34338 * 108.38794 * 359.97438 * 23 22 21 25 25 N 1.35150 * 109.22100 * 0.02562 * 21 20 19 26 26 C 1.39082 * 119.94178 * 359.49244 * 13 12 11 27 27 H 0.96997 * 119.99751 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.97036 * 0.05077 * 10 9 7 29 29 H 1.07999 * 119.78783 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.82237 * 180.27796 * 12 11 10 31 31 H 1.08996 * 109.47051 * 59.99608 * 17 16 14 32 32 H 1.09000 * 109.46772 * 299.99507 * 17 16 14 33 33 H 1.07998 * 125.09187 * 0.03596 * 19 18 17 34 34 H 1.07996 * 125.81059 * 180.02562 * 23 22 21 35 35 H 1.07997 * 126.43741 * 180.02562 * 24 23 22 36 36 H 1.08000 * 120.20912 * 180.22994 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0510 -1.2331 -0.2800 9 6 1.3493 -2.4089 0.3650 10 6 1.8187 -3.6484 -0.1098 11 6 1.1750 -4.8124 0.2473 12 6 0.0684 -4.7747 1.0769 13 6 -0.4161 -3.5519 1.5543 14 6 -1.6016 -3.5196 2.4358 15 8 -2.0187 -2.4582 2.8540 16 8 -2.2198 -4.6672 2.7756 17 6 -3.3784 -4.5597 3.6442 18 6 -3.9330 -5.9347 3.9143 19 6 -3.3909 -7.0108 3.4026 20 16 -4.2861 -8.4325 3.9194 21 6 -5.3958 -7.4238 4.8454 22 7 -6.4615 -7.4928 5.6273 23 6 -6.8061 -6.2569 6.0096 24 6 -5.9423 -5.3871 5.4602 25 7 -5.0361 -6.1279 4.7117 26 6 0.2227 -2.3674 1.2031 27 1 -0.4849 0.8400 -0.0004 28 1 2.6846 -3.6865 -0.7542 29 1 1.5391 -5.7609 -0.1190 30 1 -0.4263 -5.6938 1.3545 31 1 -4.1402 -3.9489 3.1598 32 1 -3.0848 -4.0953 4.5856 33 1 -2.5234 -7.0232 2.7594 34 1 -7.6367 -6.0025 6.6512 35 1 -5.9510 -4.3135 5.5777 36 1 -0.1453 -1.4215 1.5721 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811069324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:29 Heat of formation + Delta-G solvation = 35.820000 kcal Electronic energy + Delta-G solvation = -23637.405627 eV Core-core repulsion = 19986.785288 eV Total energy + Delta-G solvation = -3650.620339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.88866 -40.11911 -37.77878 -37.10784 -35.76201 -33.87146 -31.16630 -30.62802 -29.89665 -29.62820 -27.68034 -25.49554 -23.93313 -22.80600 -22.03015 -21.13582 -20.37523 -20.01677 -18.51555 -17.82282 -16.76530 -16.73482 -16.28111 -15.88020 -15.59474 -15.31405 -14.95211 -14.78556 -14.54122 -13.92163 -13.58245 -13.49378 -13.23808 -12.93333 -12.72869 -12.31764 -11.98856 -11.78672 -11.44053 -11.31005 -11.19625 -10.91080 -10.77482 -10.64714 -10.62043 -10.49445 -10.39573 -9.86844 -9.70387 -9.34821 -9.13460 -7.91585 -7.88957 -7.68707 -6.94216 -4.55616 0.65781 0.69007 1.36360 1.77883 1.91339 2.02778 2.65483 2.66415 2.95760 2.99638 3.00834 3.06213 3.39777 3.81547 4.13187 4.29913 4.45222 4.74865 4.92441 4.96401 5.03129 5.23820 5.30999 5.40765 5.50898 5.78662 5.98639 6.23188 6.24051 6.41023 6.53993 6.67502 6.79805 6.82658 7.04581 7.16456 7.44040 7.52627 7.60041 7.77701 7.96742 8.26584 8.32015 8.64074 8.66593 10.01127 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.002581 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.701246 B =10847.453109 C =11951.180232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.458 4.458 8 H 0.084 0.916 9 C 0.096 3.904 10 C -0.199 4.199 11 C -0.102 4.102 12 C -0.196 4.196 13 C -0.114 4.114 14 C 0.518 3.482 15 O -0.512 6.512 16 O -0.350 6.350 17 C 0.132 3.868 18 C 0.068 3.932 19 C -0.190 4.190 20 S 0.191 5.809 21 C 0.137 3.863 22 N -0.460 5.460 23 C 0.017 3.983 24 C -0.054 4.054 25 N -0.398 5.398 26 C -0.088 4.088 27 H 0.286 0.714 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.207 0.793 34 H 0.187 0.813 35 H 0.184 0.816 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 -9.371 6.903 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.487 4.487 8 H 0.102 0.898 9 C 0.093 3.907 10 C -0.219 4.219 11 C -0.120 4.120 12 C -0.215 4.215 13 C -0.116 4.116 14 C 0.365 3.635 15 O -0.400 6.400 16 O -0.267 6.267 17 C 0.054 3.946 18 C -0.042 4.042 19 C -0.327 4.327 20 S 0.442 5.558 21 C -0.229 4.229 22 N -0.183 5.183 23 C -0.133 4.133 24 C -0.186 4.186 25 N -0.078 5.078 26 C -0.107 4.107 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.224 0.776 34 H 0.204 0.796 35 H 0.201 0.799 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.251 -10.939 6.996 15.385 hybrid contribution 0.347 3.127 0.071 3.147 sum -7.905 -7.813 7.068 13.171 Atomic orbital electron populations 1.69766 1.07638 1.29949 1.33731 1.25976 0.94803 1.01686 0.92156 0.86253 0.80610 0.80274 0.79355 1.19326 1.19919 1.18299 1.19581 0.98150 0.90841 1.40093 0.89836 1.17543 0.91083 0.92679 0.89361 1.21212 1.03147 0.92743 1.04816 1.20517 0.96082 0.96994 0.98417 1.20515 1.00457 0.95115 1.05442 1.18745 0.94649 0.96097 1.02069 1.21954 0.82892 0.80308 0.78343 1.90790 1.65059 1.31154 1.53030 1.86512 1.40897 1.37113 1.62186 1.20987 0.87972 0.90081 0.95565 1.18414 0.90012 0.97868 0.97922 1.25034 1.06806 0.93298 1.07554 1.84784 1.20488 1.03180 1.47349 1.26363 1.02190 0.86912 1.07431 1.70617 1.10001 1.24296 1.13399 1.22419 1.00900 0.87352 1.02601 1.22918 0.94138 0.99169 1.02407 1.43617 1.20934 1.08684 1.34607 1.21651 0.96466 0.95885 0.96697 0.90328 0.88221 0.88400 0.87943 0.89095 0.89148 0.77625 0.79579 0.79866 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.74 10.97 55.55 0.61 -19.13 16 2 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16 3 Si 0.91 17.85 29.59 -169.99 -5.03 12.82 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.46 -11.37 9.05 -37.73 -0.34 -11.71 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.10 2.38 5.57 -106.87 -0.59 1.79 16 10 C -0.20 -4.43 9.78 -38.81 -0.38 -4.81 16 11 C -0.10 -2.03 10.01 -39.73 -0.40 -2.43 16 12 C -0.20 -3.91 9.62 -38.91 -0.37 -4.28 16 13 C -0.11 -2.54 5.87 -105.06 -0.62 -3.15 16 14 C 0.52 10.49 7.90 34.63 0.27 10.76 16 15 O -0.51 -11.43 16.12 -19.23 -0.31 -11.74 16 16 O -0.35 -5.65 8.21 -40.50 -0.33 -5.99 16 17 C 0.13 1.76 6.02 36.01 0.22 1.97 16 18 C 0.07 0.84 6.75 -81.75 -0.55 0.29 16 19 C -0.19 -2.11 10.32 29.04 0.30 -1.81 16 20 S 0.19 2.02 23.37 -107.50 -2.51 -0.50 16 21 C 0.14 1.81 8.92 -88.71 -0.79 1.02 16 22 N -0.46 -6.32 11.32 -13.56 -0.15 -6.47 16 23 C 0.02 0.18 11.82 -18.04 -0.21 -0.03 16 24 C -0.05 -0.57 11.97 -15.71 -0.19 -0.76 16 25 N -0.40 -5.01 3.19 -59.54 -0.19 -5.20 16 26 C -0.09 -2.18 8.23 -38.43 -0.32 -2.50 16 27 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 28 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 29 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.10 1.75 7.59 -52.49 -0.40 1.35 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.21 2.05 7.37 -52.49 -0.39 1.67 16 34 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.14 3.62 5.77 -52.49 -0.30 3.32 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -29.00 336.50 -10.09 -39.09 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -3.17 Total: 6.04 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -4.06 Total: -14.00 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.27 Total: -30.79 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.64 Total: -17.72 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.50 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.00 -10.09 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811069324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.907 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds