Wall clock time and date at job start Tue Mar 31 2020 15:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86798 * 119.99938 * 2 1 4 4 H 1.48503 * 109.47128 * 269.99999 * 3 2 1 5 5 H 1.48495 * 109.47324 * 30.00028 * 3 2 1 6 6 H 1.48501 * 109.46923 * 150.00222 * 3 2 1 7 7 C 1.39928 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00372 * 162.61812 * 7 2 1 9 9 C 1.41443 * 120.00228 * 342.61254 * 7 2 1 10 10 C 1.40787 * 120.17947 * 154.90040 * 9 7 2 11 11 C 1.37715 * 120.05184 * 180.02562 * 10 9 7 12 12 C 1.38361 * 120.41993 * 359.75321 * 11 10 9 13 13 C 1.39922 * 120.34837 * 0.50485 * 12 11 10 14 14 C 1.47774 * 120.02878 * 179.76921 * 13 12 11 15 15 O 1.21458 * 120.00055 * 179.72694 * 14 13 12 16 16 O 1.34704 * 119.99723 * 359.72297 * 14 13 12 17 17 C 1.45206 * 116.99910 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47006 * 180.02562 * 17 16 14 19 19 C 1.30909 * 121.83908 * 359.97438 * 18 17 16 20 20 S 1.75784 * 109.81502 * 180.02562 * 19 18 17 21 21 C 1.76247 * 90.70204 * 359.97438 * 20 19 18 22 22 N 1.32353 * 141.95321 * 179.97438 * 21 20 19 23 23 C 1.33873 * 109.13840 * 180.02562 * 22 21 20 24 24 C 1.34338 * 108.38794 * 359.97438 * 23 22 21 25 25 N 1.35150 * 109.22100 * 0.02562 * 21 20 19 26 26 C 1.39082 * 119.94178 * 359.49244 * 13 12 11 27 27 H 0.96997 * 119.99751 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.97036 * 0.05077 * 10 9 7 29 29 H 1.07999 * 119.78783 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.82237 * 180.27796 * 12 11 10 31 31 H 1.08996 * 109.47051 * 59.99608 * 17 16 14 32 32 H 1.09000 * 109.46772 * 299.99507 * 17 16 14 33 33 H 1.07998 * 125.09187 * 0.03596 * 19 18 17 34 34 H 1.07996 * 125.81059 * 180.02562 * 23 22 21 35 35 H 1.07997 * 126.43741 * 180.02562 * 24 23 22 36 36 H 1.08000 * 120.20912 * 180.22994 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0510 -1.2331 -0.2800 9 6 1.3493 -2.4089 0.3650 10 6 1.8187 -3.6484 -0.1098 11 6 1.1750 -4.8124 0.2473 12 6 0.0684 -4.7747 1.0769 13 6 -0.4161 -3.5519 1.5543 14 6 -1.6016 -3.5196 2.4358 15 8 -2.0187 -2.4582 2.8540 16 8 -2.2198 -4.6672 2.7756 17 6 -3.3784 -4.5597 3.6442 18 6 -3.9330 -5.9347 3.9143 19 6 -3.3909 -7.0108 3.4026 20 16 -4.2861 -8.4325 3.9194 21 6 -5.3958 -7.4238 4.8454 22 7 -6.4615 -7.4928 5.6273 23 6 -6.8061 -6.2569 6.0096 24 6 -5.9423 -5.3871 5.4602 25 7 -5.0361 -6.1279 4.7117 26 6 0.2227 -2.3674 1.2031 27 1 -0.4849 0.8400 -0.0004 28 1 2.6846 -3.6865 -0.7542 29 1 1.5391 -5.7609 -0.1190 30 1 -0.4263 -5.6938 1.3545 31 1 -4.1402 -3.9489 3.1598 32 1 -3.0848 -4.0953 4.5856 33 1 -2.5234 -7.0232 2.7594 34 1 -7.6367 -6.0025 6.6512 35 1 -5.9510 -4.3135 5.5777 36 1 -0.1453 -1.4215 1.5721 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811069324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:28 Heat of formation + Delta-G solvation = 22.726587 kcal Electronic energy + Delta-G solvation = -23637.973400 eV Core-core repulsion = 19986.785288 eV Total energy + Delta-G solvation = -3651.188112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.76321 -41.61848 -39.31495 -38.36362 -37.09851 -35.61584 -32.44853 -31.89490 -31.37567 -30.88963 -28.71590 -27.25664 -25.27084 -24.00523 -22.90778 -22.84441 -21.68855 -21.17073 -19.84045 -19.13242 -18.20022 -17.90443 -17.84336 -17.02514 -16.88218 -16.54665 -16.35175 -15.99930 -15.51318 -15.19960 -15.08609 -14.91137 -14.58471 -14.35378 -13.92390 -13.62763 -13.51270 -13.05286 -12.93488 -12.80308 -12.58388 -12.32492 -12.22773 -12.10888 -11.98659 -11.58464 -11.55802 -11.43950 -11.32627 -11.08730 -10.00173 -9.62503 -9.43496 -8.75474 -8.69312 -6.39994 -0.19465 -0.19192 0.09091 0.49044 0.96260 0.97444 0.99770 1.37999 1.44513 1.52765 1.74734 1.79138 1.80982 2.18674 2.71589 3.12760 3.42519 3.62446 3.78304 3.84951 3.89852 4.07527 4.28330 4.42049 4.45490 4.53650 4.64925 4.82117 4.92242 5.04444 5.09639 5.13272 5.27470 5.43964 5.44354 5.67193 5.80108 5.88970 6.01177 6.23580 6.52677 6.57992 6.69541 6.86058 6.88222 8.28097 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.002581 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.701246 B =10847.453109 C =11951.180232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.032 3.968 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.494 4.494 8 H 0.086 0.914 9 C 0.065 3.935 10 C -0.202 4.202 11 C -0.100 4.100 12 C -0.175 4.175 13 C -0.127 4.127 14 C 0.525 3.475 15 O -0.539 6.539 16 O -0.335 6.335 17 C 0.135 3.865 18 C 0.052 3.948 19 C -0.185 4.185 20 S 0.229 5.771 21 C 0.105 3.895 22 N -0.490 5.490 23 C 0.011 3.989 24 C -0.059 4.059 25 N -0.403 5.403 26 C -0.122 4.122 27 H 0.287 0.713 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.221 0.779 34 H 0.218 0.782 35 H 0.210 0.790 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 -11.066 7.003 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.183 4.183 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.524 4.524 8 H 0.104 0.896 9 C 0.062 3.938 10 C -0.221 4.221 11 C -0.118 4.118 12 C -0.195 4.195 13 C -0.128 4.128 14 C 0.373 3.627 15 O -0.430 6.430 16 O -0.251 6.251 17 C 0.058 3.942 18 C -0.058 4.058 19 C -0.321 4.321 20 S 0.480 5.520 21 C -0.259 4.259 22 N -0.214 5.214 23 C -0.138 4.138 24 C -0.191 4.191 25 N -0.084 5.084 26 C -0.142 4.142 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.237 0.763 34 H 0.234 0.766 35 H 0.227 0.773 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.123 -12.679 7.097 16.646 hybrid contribution 0.212 3.386 0.095 3.394 sum -7.911 -9.293 7.192 14.166 Atomic orbital electron populations 1.69854 1.09131 1.30706 1.35511 1.26798 0.95413 1.04823 0.91300 0.85223 0.79148 0.75920 0.79631 1.18364 1.19756 1.17886 1.19846 0.98519 0.91961 1.42043 0.89594 1.17890 0.91751 0.94030 0.90086 1.21529 1.03474 0.92712 1.04428 1.20988 0.95360 0.97964 0.97440 1.21011 0.99682 0.95496 1.03284 1.18981 0.95242 0.96204 1.02374 1.21622 0.82549 0.80738 0.77812 1.90778 1.65779 1.32484 1.53993 1.86431 1.41615 1.34747 1.62351 1.21075 0.86799 0.91219 0.95149 1.18253 0.90815 0.97414 0.99332 1.25308 1.06727 0.93452 1.06664 1.84634 1.19185 1.01991 1.46198 1.26828 1.02915 0.87840 1.08358 1.70588 1.10705 1.25882 1.14268 1.23014 1.01655 0.86477 1.02657 1.23498 0.93511 1.00448 1.01651 1.43762 1.21087 1.08835 1.34743 1.21453 0.98093 0.95918 0.98720 0.90192 0.86884 0.84014 0.84083 0.88928 0.88684 0.76275 0.76592 0.77301 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.49 10.97 21.82 0.24 -43.26 16 2 C 0.03 1.57 5.14 85.25 0.44 2.00 16 3 Si 0.98 37.55 29.59 68.60 2.03 39.58 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.49 -25.39 9.05 23.47 0.21 -25.18 16 8 H 0.09 4.16 7.90 -2.91 -0.02 4.13 16 9 C 0.06 3.29 5.57 -21.32 -0.12 3.17 16 10 C -0.20 -8.75 9.78 22.77 0.22 -8.53 16 11 C -0.10 -3.65 10.01 22.18 0.22 -3.43 16 12 C -0.18 -6.48 9.62 22.71 0.22 -6.26 16 13 C -0.13 -5.57 5.87 -20.15 -0.12 -5.68 16 14 C 0.53 21.02 7.90 70.34 0.56 21.57 16 15 O -0.54 -24.51 16.12 19.97 0.32 -24.19 16 16 O -0.34 -10.18 8.21 -56.13 -0.46 -10.64 16 17 C 0.13 3.39 6.02 71.24 0.43 3.82 16 18 C 0.05 1.19 6.75 41.73 0.28 1.48 16 19 C -0.18 -3.64 10.32 67.87 0.70 -2.94 16 20 S 0.23 4.36 23.37 -56.49 -1.32 3.04 16 21 C 0.11 2.65 8.92 179.68 1.60 4.26 16 22 N -0.49 -12.95 11.32 -196.81 -2.23 -15.18 16 23 C 0.01 0.22 11.82 83.49 0.99 1.20 16 24 C -0.06 -1.16 11.97 82.68 0.99 -0.17 16 25 N -0.40 -9.53 3.19 -342.28 -1.09 -10.63 16 26 C -0.12 -6.29 8.23 23.02 0.19 -6.10 16 27 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 28 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 29 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.14 4.10 7.59 -2.91 -0.02 4.08 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.22 3.59 7.37 -2.91 -0.02 3.57 16 34 H 0.22 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.21 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.11 5.99 5.77 -2.91 -0.02 5.98 16 Total: -1.00 -65.29 336.50 5.44 -59.85 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 1.14 Total: 22.21 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: 6.81 Total: -20.79 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -3.08 Total: -69.06 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.14 Total: -34.83 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.32 Total: 3.04 kcal Total: -65.29 5.44 -59.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811069324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.574 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds