Wall clock time and date at job start Tue Mar 31 2020 14:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47307 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47025 * 300.00591 * 3 2 1 6 6 H 1.48509 * 109.46686 * 60.00452 * 3 2 1 7 7 C 1.37876 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46886 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00415 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99750 * 180.02562 * 11 10 9 14 14 S 1.65602 * 119.99791 * 185.01599 * 13 11 10 15 15 O 1.42102 * 106.40264 * 310.73111 * 14 13 11 16 16 O 1.42106 * 106.39989 * 177.81081 * 14 13 11 17 17 C 1.76192 * 107.21999 * 64.27364 * 14 13 11 18 18 C 1.38258 * 120.00214 * 242.20573 * 17 14 13 19 19 C 1.38216 * 120.00443 * 180.27454 * 18 17 14 20 20 C 1.38258 * 119.99644 * 359.49393 * 19 18 17 21 21 C 1.38215 * 119.99798 * 0.48555 * 20 19 18 22 22 C 1.38213 * 120.00176 * 62.22914 * 17 14 13 23 23 N 1.48013 * 120.00124 * 359.97438 * 22 17 14 24 24 O 1.21805 * 120.00434 * 173.28386 * 23 22 17 25 25 O 1.21801 * 119.99831 * 353.27769 * 23 22 17 26 26 H 0.97001 * 119.99769 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47107 * 59.99816 * 9 7 2 28 28 H 1.09001 * 109.46846 * 300.00076 * 9 7 2 29 29 H 1.08993 * 109.47211 * 59.99797 * 10 9 7 30 30 H 1.08999 * 109.46730 * 299.99603 * 10 9 7 31 31 H 0.97004 * 120.00093 * 5.01132 * 13 11 10 32 32 H 1.08003 * 119.99370 * 0.02562 * 18 17 14 33 33 H 1.07997 * 119.99867 * 179.72522 * 19 18 17 34 34 H 1.07996 * 119.99566 * 180.25820 * 20 19 18 35 35 H 1.08001 * 119.99545 * 179.77217 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1657 -6.1344 -0.0008 14 16 1.3425 -7.5657 -0.1268 15 8 0.2952 -7.5122 0.8322 16 8 2.3244 -8.5927 -0.1489 17 6 0.5677 -7.5842 -1.7092 18 6 -0.8107 -7.6370 -1.8034 19 6 -1.4183 -7.6572 -3.0447 20 6 -0.6481 -7.6141 -4.1921 21 6 0.7298 -7.5610 -4.0979 22 6 1.3378 -7.5465 -2.8562 23 7 2.8134 -7.4900 -2.7555 24 8 3.4964 -7.5800 -3.7599 25 8 3.3447 -7.3533 -1.6680 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 3.1329 -6.1360 0.0733 32 1 -1.4124 -7.6664 -0.9071 33 1 -2.4948 -7.7029 -3.1182 34 1 -1.1231 -7.6257 -5.1619 35 1 1.3315 -7.5310 -4.9942 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813058346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:49 Heat of formation + Delta-G solvation = -100.011925 kcal Electronic energy + Delta-G solvation = -26363.769360 eV Core-core repulsion = 22264.116892 eV Total energy + Delta-G solvation = -4099.652468 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.64721 -41.22871 -40.55158 -38.77200 -37.86760 -37.32144 -35.64697 -35.60989 -33.42418 -33.00705 -32.86020 -28.02861 -27.93653 -24.91081 -24.51138 -23.88729 -21.97249 -21.29799 -20.71396 -20.12676 -19.20148 -19.15195 -18.98532 -18.53300 -17.92737 -17.05428 -16.85331 -16.47977 -16.45356 -16.11534 -15.79955 -15.52934 -14.69471 -14.47974 -14.36062 -14.02725 -13.87978 -13.54493 -13.51440 -13.30482 -13.24999 -12.95365 -12.86955 -12.62377 -12.56143 -12.46975 -12.27645 -12.00275 -11.85909 -11.74930 -11.38432 -11.16887 -10.98946 -10.82106 -10.57201 -8.19042 -6.31893 -1.70803 -1.15569 -0.56074 -0.02121 0.03822 0.96740 1.35949 1.43803 1.44591 1.57685 1.92748 2.25936 2.42436 2.81630 3.15179 3.17736 3.33360 3.56026 3.70672 3.73409 3.86613 3.95178 4.26724 4.35534 4.39100 4.46069 4.71511 4.82074 4.86632 4.98306 5.26196 5.48978 5.58795 5.65281 5.82907 6.14005 6.20679 6.44235 6.86651 7.38304 8.93596 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.003797 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.767407 B = 7372.311760 C = 7465.469912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.524 6.524 13 N -1.030 6.030 14 S 2.695 3.305 15 O -0.959 6.959 16 O -0.943 6.943 17 C -0.649 4.649 18 C -0.019 4.019 19 C -0.075 4.075 20 C -0.046 4.046 21 C -0.063 4.063 22 C 0.009 3.991 23 N 0.017 4.983 24 O -0.109 6.109 25 O -0.199 6.199 26 H 0.263 0.737 27 H -0.008 1.008 28 H -0.008 1.008 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.454 0.546 32 H 0.166 0.834 33 H 0.197 0.803 34 H 0.210 0.790 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.047 -18.402 -11.114 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.094 0.906 9 C -0.001 4.001 10 C -0.165 4.165 11 C 0.323 3.677 12 O -0.398 6.398 13 N -0.800 5.800 14 S 2.785 3.215 15 O -0.949 6.949 16 O -0.934 6.934 17 C -0.736 4.736 18 C -0.039 4.039 19 C -0.094 4.094 20 C -0.064 4.064 21 C -0.082 4.082 22 C -0.074 4.074 23 N 0.534 4.466 24 O -0.338 6.338 25 O -0.399 6.399 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.296 0.704 32 H 0.183 0.817 33 H 0.215 0.785 34 H 0.227 0.773 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.704 -18.951 -10.406 21.687 hybrid contribution 0.912 1.125 -0.165 1.458 sum -0.792 -17.825 -10.571 20.739 Atomic orbital electron populations 1.70155 1.08129 1.27751 1.51494 1.26040 0.95680 1.03654 0.94646 0.85329 0.79343 0.78410 0.77511 1.17818 1.20654 1.20759 1.21704 0.94079 0.91444 1.50738 0.90572 1.18791 0.93702 0.91990 0.95589 1.21887 0.99806 0.88550 1.06282 1.21573 0.87964 0.86792 0.71400 1.90810 1.14982 1.87485 1.46480 1.54900 1.23487 1.21905 1.79725 1.02014 0.72876 0.72837 0.73749 1.93610 1.57731 1.85889 1.57653 1.93652 1.59100 1.53950 1.86674 1.30487 1.06394 1.16709 1.20058 1.21525 0.90064 0.89781 1.02516 1.22407 1.04239 0.92199 0.90528 1.22269 0.90832 0.91038 1.02301 1.21791 0.97606 0.93408 0.95417 1.20810 0.77991 1.11224 0.97375 1.43906 1.04122 0.98055 1.00530 1.94500 1.62591 1.50338 1.26391 1.94407 1.75138 1.55200 1.15176 0.92825 0.98981 0.99006 0.86121 0.86650 0.70398 0.81699 0.78548 0.77347 0.79362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 4 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.54 -29.63 9.11 25.60 0.23 -29.39 16 8 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.04 1.95 4.26 29.85 0.13 2.08 16 10 C -0.12 -4.72 5.64 29.85 0.17 -4.55 16 11 C 0.53 19.90 7.66 87.66 0.67 20.57 16 12 O -0.52 -23.28 14.89 14.04 0.21 -23.07 16 13 N -1.03 -31.31 4.40 -173.53 -0.76 -32.07 16 14 S 2.70 85.26 4.56 -56.49 -0.26 85.00 16 15 O -0.96 -35.31 15.86 -120.66 -1.91 -37.22 16 16 O -0.94 -31.51 15.38 -118.39 -1.82 -33.33 16 17 C -0.65 -17.40 5.59 22.27 0.12 -17.28 16 18 C -0.02 -0.41 9.55 22.27 0.21 -0.19 16 19 C -0.08 -0.88 10.05 22.27 0.22 -0.65 16 20 C -0.05 -0.40 10.05 22.27 0.22 -0.18 16 21 C -0.06 -0.94 9.56 22.27 0.21 -0.72 16 22 C 0.01 0.23 6.81 36.38 0.25 0.47 16 23 N 0.02 0.47 4.45 -46.47 -0.21 0.26 16 24 O -0.11 -2.83 18.47 18.88 0.35 -2.48 16 25 O -0.20 -5.96 11.67 26.36 0.31 -5.65 16 26 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 27 H -0.01 -0.48 8.10 -2.38 -0.02 -0.50 16 28 H -0.01 -0.50 8.10 -2.39 -0.02 -0.52 16 29 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 30 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 31 H 0.45 10.93 7.51 -96.74 -0.73 10.20 16 32 H 0.17 3.50 7.34 -2.91 -0.02 3.48 16 33 H 0.20 0.63 8.06 -2.91 -0.02 0.60 16 34 H 0.21 -0.30 8.06 -2.91 -0.02 -0.32 16 35 H 0.19 1.77 7.63 -2.91 -0.02 1.74 16 Total: -1.00 -83.86 324.68 1.55 -82.31 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.43 Total: 7.48 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 2.91 Total: -29.52 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -0.69 Total: -88.70 kcal Atomic # 8 Polarization: -98.89 SS G_CDS: -2.87 Total: -101.76 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 85.26 SS G_CDS: -0.26 Total: 85.00 kcal Total: -83.86 1.55 -82.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813058346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.703 kcal (2) G-P(sol) polarization free energy of solvation -83.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds