Wall clock time and date at job start Tue Mar 31 2020 15:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42909 * 113.99556 * 2 1 4 4 C 1.52996 * 109.46778 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47442 * 67.22043 * 4 3 2 6 6 C 1.46900 * 110.99754 * 290.41360 * 5 4 3 7 7 C 1.50702 * 109.46679 * 299.79636 * 6 5 4 8 8 H 1.07999 * 120.00009 * 354.87919 * 7 6 5 9 9 C 1.37881 * 119.99736 * 174.87323 * 7 6 5 10 10 N 1.31511 * 120.00300 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99811 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47102 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47013 * 120.00250 * 11 9 7 14 14 H 1.48500 * 109.47111 * 240.00109 * 11 9 7 15 15 C 1.46908 * 110.99802 * 54.35763 * 5 4 3 16 16 C 1.50702 * 109.46494 * 66.05247 * 15 5 4 17 17 C 1.38702 * 120.77997 * 269.96953 * 16 15 5 18 18 C 1.38164 * 119.18380 * 180.02562 * 17 16 15 19 19 N 1.31896 * 120.77966 * 0.02562 * 18 17 16 20 20 C 1.31934 * 121.70665 * 359.69478 * 19 18 17 21 21 Br 1.89105 * 119.62593 * 180.29712 * 20 19 18 22 22 C 1.38344 * 120.73977 * 0.59152 * 20 19 18 23 23 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47817 * 300.00182 * 1 2 3 25 25 H 1.09007 * 109.46909 * 60.00808 * 1 2 3 26 26 H 1.09003 * 109.47091 * 59.99923 * 3 2 1 27 27 H 1.08993 * 109.46752 * 299.99775 * 3 2 1 28 28 H 1.08997 * 109.47431 * 307.22011 * 4 3 2 29 29 H 1.08999 * 109.46958 * 187.21551 * 4 3 2 30 30 H 1.08998 * 109.47543 * 59.79802 * 6 5 4 31 31 H 1.09001 * 109.46929 * 179.80311 * 6 5 4 32 32 H 0.96997 * 120.00183 * 180.02562 * 10 9 7 33 33 H 1.08993 * 109.47401 * 306.05188 * 15 5 4 34 34 H 1.08995 * 109.47245 * 186.04683 * 15 5 4 35 35 H 1.07997 * 120.41426 * 0.02562 * 17 16 15 36 36 H 1.08002 * 119.60723 * 179.97438 * 18 17 16 37 37 H 1.08006 * 120.42229 * 179.70028 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9818 0.6113 -1.2760 6 6 3.5936 -0.8014 -1.3829 7 6 4.2258 -1.5823 -0.2596 8 1 4.9183 -1.0973 0.4123 9 6 3.9198 -2.9160 -0.0898 10 7 3.0768 -3.5067 -0.9082 11 14 4.7029 -3.8838 1.3030 12 1 5.6074 -2.9951 2.0759 13 1 3.6414 -4.4089 2.1989 14 1 5.4820 -5.0166 0.7417 15 6 3.4638 1.3868 -2.4112 16 6 4.0787 2.7627 -2.4017 17 6 3.4721 3.8065 -1.7188 18 6 4.0643 5.0547 -1.7325 19 7 5.1921 5.2597 -2.3849 20 6 5.7999 4.2895 -3.0408 21 35 7.4194 4.6471 -3.9494 22 6 5.2626 3.0152 -3.0762 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6885 1.8465 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8482 0.5366 0.8192 29 1 3.9779 2.1725 0.1297 30 1 2.5088 -0.8861 -1.3187 31 1 3.9332 -1.2002 -2.3387 32 1 2.8613 -4.4448 -0.7884 33 1 2.3804 1.4724 -2.3287 34 1 3.7185 0.8815 -3.3428 35 1 2.5484 3.6456 -1.1830 36 1 3.5976 5.8725 -1.2034 37 1 5.7620 2.2260 -3.6187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815056798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:19 Heat of formation + Delta-G solvation = 9.028398 kcal Electronic energy + Delta-G solvation = -20459.045433 eV Core-core repulsion = 17283.483011 eV Total energy + Delta-G solvation = -3175.562422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.36128 -38.23017 -36.02544 -33.24794 -32.41201 -32.10111 -29.77795 -29.10497 -27.56373 -26.00879 -24.80897 -23.38319 -22.86400 -21.70675 -19.59475 -16.85436 -16.61385 -16.30064 -16.03889 -15.70167 -15.47122 -14.86040 -14.45037 -14.33778 -13.88745 -13.73973 -13.53117 -12.97571 -12.16853 -11.98980 -11.86232 -11.55929 -11.21009 -11.16231 -11.12690 -10.98906 -10.73243 -10.63585 -10.49752 -10.22362 -9.95770 -9.63580 -9.57511 -9.08123 -9.03229 -8.95616 -8.33217 -7.19822 -5.92650 -3.90511 0.87236 1.18067 1.33896 3.35427 3.42910 3.47015 3.60212 4.32030 4.39733 4.50120 4.68720 4.92895 5.00259 5.05823 5.12109 5.44814 5.45083 5.49157 5.58966 5.65264 5.72032 5.77536 5.80014 5.93057 6.01453 6.09292 6.15585 6.34711 6.50780 6.69972 7.26509 7.64841 7.65347 7.77693 7.83277 8.05261 8.24523 8.59381 9.14409 9.70939 11.18791 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.003602 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.066968 B = 7771.126537 C = 8964.591420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.021 3.979 4 C 0.059 3.941 5 N -0.524 5.524 6 C 0.182 3.818 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.890 3.110 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.079 3.921 16 C -0.008 4.008 17 C -0.159 4.159 18 C 0.104 3.896 19 N -0.471 5.471 20 C 0.121 3.879 21 Br -0.018 7.018 22 C -0.118 4.118 23 H 0.083 0.917 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.019 0.981 32 H 0.257 0.743 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 16.928 -4.360 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.260 6.260 3 C -0.057 4.057 4 C -0.070 4.070 5 N -0.247 5.247 6 C 0.058 3.942 7 C -0.533 4.533 8 H 0.076 0.924 9 C -0.141 4.141 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.213 1.213 15 C -0.049 4.049 16 C -0.017 4.017 17 C -0.180 4.180 18 C -0.054 4.054 19 N -0.182 5.182 20 C -0.095 4.095 21 Br 0.066 6.934 22 C -0.140 4.140 23 H 0.101 0.899 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.695 17.545 -4.755 18.257 hybrid contribution -1.519 -1.269 1.042 2.236 sum 0.176 16.276 -3.714 16.695 Atomic orbital electron populations 1.22691 0.83556 1.02408 0.98318 1.88494 1.17450 1.25452 1.94564 1.23391 0.97463 0.86278 0.98616 1.22256 0.89489 0.99755 0.95517 1.62431 1.58043 1.05417 0.98855 1.20081 0.97371 0.79655 0.97088 1.21041 1.24988 0.94299 1.12946 0.92381 1.24854 0.95283 0.97688 0.96225 1.69958 1.34798 1.11305 1.37581 0.86570 0.79041 0.80050 0.82452 1.19877 1.21308 1.21269 1.21173 0.96784 0.89206 0.97774 1.20508 0.92995 0.96240 0.91995 1.22249 1.01780 0.93732 1.00191 1.22676 0.90790 0.96409 0.95558 1.67374 1.09395 1.33842 1.07565 1.22684 0.95222 0.91828 0.99756 1.96748 1.26036 1.96535 1.74060 1.21916 0.95925 0.95925 1.00264 0.89866 0.95251 0.95273 0.94409 0.94159 0.88309 0.91593 0.94255 0.96328 0.93339 0.93470 0.89776 0.84517 0.82186 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.34 -6.78 7.57 -35.23 -0.27 -7.05 16 3 C 0.02 0.34 5.22 37.16 0.19 0.53 16 4 C 0.06 1.06 5.19 -3.82 -0.02 1.04 16 5 N -0.52 -10.43 4.74 -237.52 -1.13 -11.56 16 6 C 0.18 4.49 4.28 -4.97 -0.02 4.47 16 7 C -0.49 -13.47 8.22 -34.44 -0.28 -13.75 16 8 H 0.06 1.59 6.97 -52.49 -0.37 1.23 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 10 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 11 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 15 C 0.08 1.27 4.83 -4.97 -0.02 1.25 16 16 C -0.01 -0.11 4.90 -104.32 -0.51 -0.62 16 17 C -0.16 -1.91 8.18 -39.44 -0.32 -2.23 16 18 C 0.10 1.21 11.18 -17.55 -0.20 1.02 16 19 N -0.47 -6.55 10.32 -11.64 -0.12 -6.67 16 20 C 0.12 1.69 7.16 -17.47 -0.13 1.57 16 21 Br -0.02 -0.22 33.87 -68.01 -2.30 -2.52 16 22 C -0.12 -1.65 9.54 -39.42 -0.38 -2.03 16 23 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.58 4.52 -51.93 -0.23 0.35 16 28 H 0.10 2.06 6.33 -51.93 -0.33 1.73 16 29 H 0.07 1.05 6.56 -51.93 -0.34 0.71 16 30 H 0.04 1.04 5.29 -51.93 -0.27 0.76 16 31 H 0.02 0.50 8.05 -51.93 -0.42 0.08 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.05 0.74 5.68 -51.93 -0.29 0.45 16 34 H 0.08 1.36 7.97 -51.93 -0.41 0.95 16 35 H 0.14 1.41 6.34 -52.49 -0.33 1.08 16 36 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.15 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -30.48 320.52 -8.62 -39.10 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.68 Total: -1.69 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.67 Total: -5.64 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.51 Total: -43.65 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.27 Total: -7.05 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.30 Total: -2.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.48 -8.62 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815056798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.129 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds