Wall clock time and date at job start Tue Mar 31 2020 15:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42909 * 113.99556 * 2 1 4 4 C 1.52996 * 109.46778 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47442 * 67.22043 * 4 3 2 6 6 C 1.46900 * 110.99754 * 290.41360 * 5 4 3 7 7 C 1.50702 * 109.46679 * 299.79636 * 6 5 4 8 8 H 1.07999 * 120.00009 * 354.87919 * 7 6 5 9 9 C 1.37881 * 119.99736 * 174.87323 * 7 6 5 10 10 N 1.31511 * 120.00300 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99811 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47102 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47013 * 120.00250 * 11 9 7 14 14 H 1.48500 * 109.47111 * 240.00109 * 11 9 7 15 15 C 1.46908 * 110.99802 * 54.35763 * 5 4 3 16 16 C 1.50702 * 109.46494 * 66.05247 * 15 5 4 17 17 C 1.38702 * 120.77997 * 269.96953 * 16 15 5 18 18 C 1.38164 * 119.18380 * 180.02562 * 17 16 15 19 19 N 1.31896 * 120.77966 * 0.02562 * 18 17 16 20 20 C 1.31934 * 121.70665 * 359.69478 * 19 18 17 21 21 Br 1.89105 * 119.62593 * 180.29712 * 20 19 18 22 22 C 1.38344 * 120.73977 * 0.59152 * 20 19 18 23 23 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47817 * 300.00182 * 1 2 3 25 25 H 1.09007 * 109.46909 * 60.00808 * 1 2 3 26 26 H 1.09003 * 109.47091 * 59.99923 * 3 2 1 27 27 H 1.08993 * 109.46752 * 299.99775 * 3 2 1 28 28 H 1.08997 * 109.47431 * 307.22011 * 4 3 2 29 29 H 1.08999 * 109.46958 * 187.21551 * 4 3 2 30 30 H 1.08998 * 109.47543 * 59.79802 * 6 5 4 31 31 H 1.09001 * 109.46929 * 179.80311 * 6 5 4 32 32 H 0.96997 * 120.00183 * 180.02562 * 10 9 7 33 33 H 1.08993 * 109.47401 * 306.05188 * 15 5 4 34 34 H 1.08995 * 109.47245 * 186.04683 * 15 5 4 35 35 H 1.07997 * 120.41426 * 0.02562 * 17 16 15 36 36 H 1.08002 * 119.60723 * 179.97438 * 18 17 16 37 37 H 1.08006 * 120.42229 * 179.70028 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9818 0.6113 -1.2760 6 6 3.5936 -0.8014 -1.3829 7 6 4.2258 -1.5823 -0.2596 8 1 4.9183 -1.0973 0.4123 9 6 3.9198 -2.9160 -0.0898 10 7 3.0768 -3.5067 -0.9082 11 14 4.7029 -3.8838 1.3030 12 1 5.6074 -2.9951 2.0759 13 1 3.6414 -4.4089 2.1989 14 1 5.4820 -5.0166 0.7417 15 6 3.4638 1.3868 -2.4112 16 6 4.0787 2.7627 -2.4017 17 6 3.4721 3.8065 -1.7188 18 6 4.0643 5.0547 -1.7325 19 7 5.1921 5.2597 -2.3849 20 6 5.7999 4.2895 -3.0408 21 35 7.4194 4.6471 -3.9494 22 6 5.2626 3.0152 -3.0762 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6885 1.8465 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8482 0.5366 0.8192 29 1 3.9779 2.1725 0.1297 30 1 2.5088 -0.8861 -1.3187 31 1 3.9332 -1.2002 -2.3387 32 1 2.8613 -4.4448 -0.7884 33 1 2.3804 1.4724 -2.3287 34 1 3.7185 0.8815 -3.3428 35 1 2.5484 3.6456 -1.1830 36 1 3.5976 5.8725 -1.2034 37 1 5.7620 2.2260 -3.6187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815056798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:18 Heat of formation + Delta-G solvation = -11.425715 kcal Electronic energy + Delta-G solvation = -20459.932390 eV Core-core repulsion = 17283.483011 eV Total energy + Delta-G solvation = -3176.449379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41994 -39.61174 -37.43543 -34.92008 -33.71162 -33.39181 -30.91195 -30.42334 -29.22667 -27.28912 -26.40381 -24.41393 -24.37001 -23.10341 -21.05265 -18.42581 -17.94708 -17.57115 -17.40472 -16.97721 -16.71783 -16.36958 -15.99160 -15.69624 -15.12825 -15.06657 -14.66134 -14.39107 -13.78792 -13.53816 -13.20210 -12.95876 -12.87946 -12.62736 -12.51899 -12.43573 -12.32624 -12.00011 -11.83966 -11.70052 -11.48302 -11.18334 -10.72074 -10.63400 -10.55097 -10.24184 -9.93970 -8.79498 -8.06150 -6.09978 -0.12987 0.14190 0.33835 1.42029 1.43556 1.54783 2.46773 2.59754 3.05788 3.28973 3.37637 3.52061 3.74154 3.90479 3.98276 4.05572 4.20355 4.35997 4.43335 4.52840 4.55832 4.60834 4.63060 4.72124 4.80854 4.84076 4.89457 5.14053 5.29513 5.45134 5.52854 5.72038 5.76912 6.20406 6.37949 6.50026 6.67676 6.73581 7.04923 7.55442 9.05134 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.003602 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.066968 B = 7771.126537 C = 8964.591420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.390 6.390 3 C 0.023 3.977 4 C 0.061 3.939 5 N -0.536 5.536 6 C 0.199 3.801 7 C -0.501 4.501 8 H 0.051 0.949 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.952 3.048 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.085 3.915 16 C -0.019 4.019 17 C -0.149 4.149 18 C 0.110 3.890 19 N -0.486 5.486 20 C 0.109 3.891 21 Br -0.010 7.010 22 C -0.127 4.127 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.026 0.974 31 H -0.014 1.014 32 H 0.258 0.742 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.160 0.840 36 H 0.199 0.801 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 18.933 -3.303 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.309 6.309 3 C -0.054 4.054 4 C -0.067 4.067 5 N -0.259 5.259 6 C 0.074 3.926 7 C -0.539 4.539 8 H 0.069 0.931 9 C -0.188 4.188 10 N -0.571 5.571 11 Si 0.778 3.222 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.042 4.042 16 C -0.028 4.028 17 C -0.169 4.169 18 C -0.048 4.048 19 N -0.197 5.197 20 C -0.106 4.106 21 Br 0.074 6.926 22 C -0.150 4.150 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.043 0.957 31 H 0.004 0.996 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.216 0.784 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.142 19.575 -3.699 19.954 hybrid contribution -1.356 -1.798 0.693 2.356 sum -0.214 17.777 -3.006 18.031 Atomic orbital electron populations 1.22783 0.81655 1.02253 1.00373 1.88399 1.19750 1.27762 1.94971 1.23421 0.95702 0.85442 1.00871 1.22208 0.91412 0.99896 0.93208 1.62223 1.59051 1.03622 1.01041 1.19655 0.96066 0.82475 0.94430 1.21322 1.24553 0.94786 1.13264 0.93077 1.25609 0.95874 0.98781 0.98497 1.70073 1.36190 1.11563 1.39229 0.85604 0.78250 0.78615 0.79703 1.19283 1.20896 1.20935 1.21076 0.97334 0.89944 0.95873 1.20310 0.93466 0.95554 0.93508 1.22471 1.02181 0.93130 0.99167 1.23301 0.89797 0.97260 0.94463 1.67448 1.10364 1.33893 1.07981 1.22785 0.95794 0.91824 1.00233 1.96740 1.25516 1.96459 1.73927 1.21935 0.96238 0.96170 1.00683 0.91288 0.92763 0.93468 0.91603 0.92071 0.91687 0.88967 0.95651 0.99640 0.93340 0.92574 0.90757 0.82200 0.78425 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.39 -15.20 7.57 -148.98 -1.13 -16.32 16 3 C 0.02 0.70 5.22 71.98 0.38 1.08 16 4 C 0.06 2.13 5.19 86.30 0.45 2.58 16 5 N -0.54 -21.38 4.74 -905.36 -4.29 -25.67 16 6 C 0.20 10.12 4.28 85.56 0.37 10.48 16 7 C -0.50 -27.90 8.22 25.60 0.21 -27.69 16 8 H 0.05 2.86 6.97 -2.91 -0.02 2.84 16 9 C 0.01 0.56 5.46 84.66 0.46 1.03 16 10 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 11 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 C 0.09 2.71 4.83 85.56 0.41 3.13 16 16 C -0.02 -0.50 4.90 -19.67 -0.10 -0.60 16 17 C -0.15 -3.07 8.18 22.36 0.18 -2.89 16 18 C 0.11 2.16 11.18 84.67 0.95 3.11 16 19 N -0.49 -12.31 10.32 -190.75 -1.97 -14.28 16 20 C 0.11 2.90 7.16 84.70 0.61 3.51 16 21 Br -0.01 -0.25 33.87 -20.37 -0.69 -0.94 16 22 C -0.13 -3.48 9.54 22.38 0.21 -3.27 16 23 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.57 4.52 -2.39 -0.01 1.56 16 28 H 0.06 2.71 6.33 -2.39 -0.02 2.70 16 29 H 0.09 2.69 6.56 -2.39 -0.02 2.68 16 30 H 0.03 1.39 5.29 -2.39 -0.01 1.38 16 31 H -0.01 -0.81 8.05 -2.39 -0.02 -0.83 16 32 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.06 1.68 5.68 -2.39 -0.01 1.67 16 34 H 0.07 2.47 7.97 -2.39 -0.02 2.45 16 35 H 0.16 2.53 6.34 -2.91 -0.02 2.52 16 36 H 0.20 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -66.93 320.52 0.69 -66.24 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.08 Total: 6.73 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.38 Total: -7.53 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -5.98 Total: -95.10 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.13 Total: -16.32 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.94 kcal Total: -66.93 0.69 -66.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815056798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.811 kcal (2) G-P(sol) polarization free energy of solvation -66.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds