Wall clock time and date at job start Tue Mar 31 2020 15:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99777 * 2 1 4 4 H 1.48505 * 109.47163 * 270.00164 * 3 2 1 5 5 H 1.48499 * 109.47433 * 30.00102 * 3 2 1 6 6 H 1.48503 * 109.46913 * 150.00546 * 3 2 1 7 7 C 1.37877 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99142 * 359.97438 * 7 2 1 9 9 C 1.50690 * 120.00213 * 179.97438 * 7 2 1 10 10 O 1.42904 * 109.47395 * 179.97438 * 9 7 2 11 11 C 1.42893 * 114.00444 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47543 * 179.97438 * 11 10 9 13 13 O 1.45197 * 109.46954 * 64.99875 * 12 11 10 14 14 C 1.34230 * 116.99756 * 180.02562 * 13 12 11 15 15 O 1.20823 * 120.00536 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99742 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.63789 * 335.25345 * 16 14 13 18 18 S 1.81473 * 109.55212 * 95.50886 * 16 14 13 19 19 C 1.81914 * 101.37500 * 165.51713 * 18 16 14 20 20 C 1.52445 * 108.26727 * 295.13802 * 19 18 16 21 21 C 1.51379 * 111.71003 * 52.22868 * 20 19 18 22 22 S 1.76889 * 121.93573 * 160.33826 * 21 20 19 23 23 C 1.75439 * 91.28846 * 179.35111 * 22 21 20 24 24 C 1.32421 * 109.45718 * 0.12541 * 23 22 21 25 25 C 1.33946 * 128.50281 * 339.98587 * 21 20 19 26 26 H 0.97002 * 119.99859 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47676 * 59.99672 * 9 7 2 28 28 H 1.09002 * 109.47246 * 299.99714 * 9 7 2 29 29 H 1.09006 * 109.47117 * 59.99588 * 11 10 9 30 30 H 1.09003 * 109.47046 * 300.00443 * 11 10 9 31 31 H 1.08999 * 109.46880 * 305.00229 * 12 11 10 32 32 H 1.08992 * 109.47372 * 185.00359 * 12 11 10 33 33 H 1.08998 * 109.70942 * 54.83140 * 19 18 16 34 34 H 1.08999 * 109.70519 * 175.40559 * 19 18 16 35 35 H 1.09009 * 109.03118 * 291.65759 * 20 19 18 36 36 H 1.09001 * 109.03660 * 172.80913 * 20 19 18 37 37 H 1.08003 * 125.27304 * 180.10162 * 23 22 21 38 38 H 1.08002 * 122.03632 * 180.10883 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4124 -2.6541 -0.0021 12 6 5.8070 -4.1323 -0.0012 13 8 5.3717 -4.7501 -1.2410 14 6 5.6425 -6.0553 -1.3993 15 8 6.2235 -6.6615 -0.5306 16 6 5.2218 -6.7645 -2.6608 17 1 4.3758 -6.2435 -3.1092 18 16 6.6075 -6.7934 -3.8323 19 6 6.0391 -8.0394 -5.0296 20 6 5.9493 -9.3829 -4.3148 21 6 5.1278 -9.2887 -3.0468 22 16 4.4186 -10.7179 -2.2830 23 6 3.7362 -9.7403 -0.9960 24 6 4.0521 -8.4694 -1.1925 25 6 4.8214 -8.1990 -2.3307 26 1 -0.4850 0.8401 0.0004 27 1 3.8753 -0.6803 0.8888 28 1 3.8745 -0.6800 -0.8912 29 1 5.8159 -2.1702 0.8874 30 1 5.8145 -2.1709 -0.8926 31 1 5.3318 -4.6347 0.8414 32 1 6.8898 -4.2193 0.0875 33 1 5.0574 -7.7605 -5.4124 34 1 6.7491 -8.1078 -5.8538 35 1 6.9550 -9.7194 -4.0627 36 1 5.4894 -10.1111 -4.9830 37 1 3.1490 -10.1166 -0.1713 38 1 3.7354 -7.6892 -0.5163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815214729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:53 Heat of formation + Delta-G solvation = -92.099334 kcal Electronic energy + Delta-G solvation = -22657.310900 eV Core-core repulsion = 19104.294762 eV Total energy + Delta-G solvation = -3553.016138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64371 -38.68077 -37.19649 -36.13394 -34.35837 -32.72583 -31.61114 -30.14819 -28.25044 -27.56086 -24.77273 -22.70957 -22.65853 -21.89901 -21.22704 -18.65726 -18.27246 -17.71949 -17.04408 -16.85950 -16.39453 -16.22058 -15.77230 -15.08328 -15.01854 -14.67976 -14.44218 -14.11648 -13.87930 -13.56819 -13.37800 -13.16091 -12.98900 -12.58002 -12.44572 -12.24089 -12.01702 -11.77138 -11.74694 -11.20026 -11.12734 -10.90525 -10.71599 -10.56124 -10.52014 -10.34342 -9.89238 -9.22951 -8.94081 -8.92400 -8.64008 -8.52877 -8.09150 -6.13952 -4.13417 0.61557 0.87824 1.24274 1.63020 1.87635 2.17793 2.50377 2.71123 3.23219 3.30234 3.30913 4.01979 4.21849 4.33045 4.37761 4.44705 4.61697 4.70490 4.78958 4.93073 4.99879 5.10183 5.14684 5.17235 5.29554 5.33022 5.47654 5.65915 5.69011 5.74827 5.90971 5.94833 6.10346 6.41863 6.53747 6.94741 7.55269 7.67665 7.92989 8.61073 8.97026 9.44740 10.99016 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002649 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.181110 B =10566.386890 C =11018.285817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.376 6.376 11 C 0.057 3.943 12 C 0.075 3.925 13 O -0.332 6.332 14 C 0.485 3.515 15 O -0.487 6.487 16 C 0.002 3.998 17 H 0.137 0.863 18 S -0.192 6.192 19 C -0.084 4.084 20 C -0.051 4.051 21 C -0.160 4.160 22 S 0.097 5.903 23 C -0.203 4.203 24 C -0.113 4.113 25 C -0.089 4.089 26 H 0.267 0.733 27 H 0.004 0.996 28 H 0.001 0.999 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.170 0.830 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.846 -20.708 -8.973 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.295 6.295 11 C -0.020 4.020 12 C 0.001 3.999 13 O -0.248 6.248 14 C 0.324 3.676 15 O -0.374 6.374 16 C -0.130 4.130 17 H 0.155 0.845 18 S 0.037 5.963 19 C -0.233 4.233 20 C -0.091 4.091 21 C -0.278 4.278 22 S 0.363 5.637 23 C -0.338 4.338 24 C -0.143 4.143 25 C -0.103 4.103 26 H 0.077 0.923 27 H 0.022 0.978 28 H 0.019 0.981 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.188 0.812 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.653 -21.856 -8.985 27.805 hybrid contribution -0.628 2.023 0.643 2.213 sum 14.025 -19.833 -8.342 25.683 Atomic orbital electron populations 1.69874 1.06068 1.27135 1.50217 1.24767 0.94817 0.98765 0.94594 0.86847 0.80325 0.83718 0.78832 1.19847 1.20758 1.19091 1.20870 0.88185 0.95371 1.51372 0.89941 1.20638 0.96317 0.79204 0.94509 1.87969 1.16613 1.29833 1.95101 1.22405 0.86173 0.92646 1.00806 1.23256 0.99333 0.93214 0.84074 1.86597 1.73248 1.23146 1.41810 1.22191 0.76682 0.81439 0.87254 1.90675 1.37324 1.66936 1.42437 1.21666 1.01858 0.94227 0.95220 0.84498 1.87211 1.27359 1.54760 1.26986 1.23437 1.06196 0.94784 0.98911 1.20302 0.99981 0.97350 0.91486 1.24379 1.05711 0.95406 1.02260 1.84261 1.50166 1.09718 1.19601 1.25145 1.07956 0.96590 1.04097 1.20151 0.99231 0.97376 0.97587 1.18841 1.02351 0.92098 0.97057 0.92319 0.97822 0.98107 0.91630 0.92858 0.90143 0.90051 0.88508 0.85946 0.88661 0.89117 0.81245 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.96 55.43 0.77 -26.74 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -15.44 9.99 -34.45 -0.34 -15.78 16 8 H 0.08 2.68 8.06 -52.48 -0.42 2.26 16 9 C 0.17 4.24 4.76 36.00 0.17 4.41 16 10 O -0.38 -8.72 10.30 -38.80 -0.40 -9.12 16 11 C 0.06 0.98 6.33 37.16 0.24 1.22 16 12 C 0.07 1.15 5.84 37.16 0.22 1.37 16 13 O -0.33 -5.54 10.19 -42.02 -0.43 -5.97 16 14 C 0.49 7.45 6.19 36.01 0.22 7.67 16 15 O -0.49 -8.22 15.65 -18.75 -0.29 -8.51 16 16 C 0.00 0.02 3.31 -28.11 -0.09 -0.07 16 17 H 0.14 1.63 8.14 -51.93 -0.42 1.21 16 18 S -0.19 -2.13 21.63 -107.50 -2.33 -4.45 16 19 C -0.08 -0.58 6.52 36.87 0.24 -0.34 16 20 C -0.05 -0.35 5.90 -27.83 -0.16 -0.52 16 21 C -0.16 -1.60 6.28 -35.48 -0.22 -1.82 16 22 S 0.10 0.88 23.25 -107.50 -2.50 -1.62 16 23 C -0.20 -2.10 11.18 28.81 0.32 -1.77 16 24 C -0.11 -1.40 8.73 -40.84 -0.36 -1.75 16 25 C -0.09 -1.08 5.11 -104.55 -0.53 -1.62 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 27 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16 28 H 0.00 0.03 7.57 -51.93 -0.39 -0.36 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.25 8.13 -51.93 -0.42 0.82 16 32 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.17 1.38 8.06 -52.48 -0.42 0.95 16 38 H 0.14 1.84 7.64 -52.49 -0.40 1.44 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -34.26 348.91 -9.97 -44.23 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.98 Total: -2.65 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.40 Total: -6.98 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.74 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -1.12 Total: -23.60 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -4.82 Total: -6.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.26 -9.97 -44.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815214729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.869 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds