Wall clock time and date at job start Tue Mar 31 2020 15:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99777 * 2 1 4 4 H 1.48505 * 109.47163 * 270.00164 * 3 2 1 5 5 H 1.48499 * 109.47433 * 30.00102 * 3 2 1 6 6 H 1.48503 * 109.46913 * 150.00546 * 3 2 1 7 7 C 1.37877 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99142 * 359.97438 * 7 2 1 9 9 C 1.50690 * 120.00213 * 179.97438 * 7 2 1 10 10 O 1.42904 * 109.47395 * 179.97438 * 9 7 2 11 11 C 1.42893 * 114.00444 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47543 * 179.97438 * 11 10 9 13 13 O 1.45197 * 109.46954 * 64.99875 * 12 11 10 14 14 C 1.34230 * 116.99756 * 180.02562 * 13 12 11 15 15 O 1.20823 * 120.00536 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99742 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.63789 * 335.25345 * 16 14 13 18 18 S 1.81473 * 109.55212 * 95.50886 * 16 14 13 19 19 C 1.81914 * 101.37500 * 165.51713 * 18 16 14 20 20 C 1.52445 * 108.26727 * 295.13802 * 19 18 16 21 21 C 1.51379 * 111.71003 * 52.22868 * 20 19 18 22 22 S 1.76889 * 121.93573 * 160.33826 * 21 20 19 23 23 C 1.75439 * 91.28846 * 179.35111 * 22 21 20 24 24 C 1.32421 * 109.45718 * 0.12541 * 23 22 21 25 25 C 1.33946 * 128.50281 * 339.98587 * 21 20 19 26 26 H 0.97002 * 119.99859 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47676 * 59.99672 * 9 7 2 28 28 H 1.09002 * 109.47246 * 299.99714 * 9 7 2 29 29 H 1.09006 * 109.47117 * 59.99588 * 11 10 9 30 30 H 1.09003 * 109.47046 * 300.00443 * 11 10 9 31 31 H 1.08999 * 109.46880 * 305.00229 * 12 11 10 32 32 H 1.08992 * 109.47372 * 185.00359 * 12 11 10 33 33 H 1.08998 * 109.70942 * 54.83140 * 19 18 16 34 34 H 1.08999 * 109.70519 * 175.40559 * 19 18 16 35 35 H 1.09009 * 109.03118 * 291.65759 * 20 19 18 36 36 H 1.09001 * 109.03660 * 172.80913 * 20 19 18 37 37 H 1.08003 * 125.27304 * 180.10162 * 23 22 21 38 38 H 1.08002 * 122.03632 * 180.10883 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4124 -2.6541 -0.0021 12 6 5.8070 -4.1323 -0.0012 13 8 5.3717 -4.7501 -1.2410 14 6 5.6425 -6.0553 -1.3993 15 8 6.2235 -6.6615 -0.5306 16 6 5.2218 -6.7645 -2.6608 17 1 4.3758 -6.2435 -3.1092 18 16 6.6075 -6.7934 -3.8323 19 6 6.0391 -8.0394 -5.0296 20 6 5.9493 -9.3829 -4.3148 21 6 5.1278 -9.2887 -3.0468 22 16 4.4186 -10.7179 -2.2830 23 6 3.7362 -9.7403 -0.9960 24 6 4.0521 -8.4694 -1.1925 25 6 4.8214 -8.1990 -2.3307 26 1 -0.4850 0.8401 0.0004 27 1 3.8753 -0.6803 0.8888 28 1 3.8745 -0.6800 -0.8912 29 1 5.8159 -2.1702 0.8874 30 1 5.8145 -2.1709 -0.8926 31 1 5.3318 -4.6347 0.8414 32 1 6.8898 -4.2193 0.0875 33 1 5.0574 -7.7605 -5.4124 34 1 6.7491 -8.1078 -5.8538 35 1 6.9550 -9.7194 -4.0627 36 1 5.4894 -10.1111 -4.9830 37 1 3.1490 -10.1166 -0.1713 38 1 3.7354 -7.6892 -0.5163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815214729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:53 Heat of formation + Delta-G solvation = -113.025215 kcal Electronic energy + Delta-G solvation = -22658.218314 eV Core-core repulsion = 19104.294762 eV Total energy + Delta-G solvation = -3553.923552 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82891 -39.59307 -38.76874 -37.49441 -35.00060 -34.90872 -32.69366 -31.55172 -29.62847 -28.91385 -25.59919 -24.10942 -23.78070 -23.47532 -22.39917 -19.51694 -19.29266 -19.11809 -18.71289 -18.10437 -17.46613 -17.38909 -17.02932 -16.51472 -16.37972 -16.06912 -15.50403 -15.13531 -14.77621 -14.65457 -14.58816 -14.27047 -14.25055 -14.00933 -13.82785 -13.39817 -13.02884 -12.94923 -12.70042 -12.64583 -12.56497 -12.35130 -11.92892 -11.88963 -11.78248 -11.73000 -11.37709 -11.12549 -10.94410 -10.43435 -9.71736 -9.39916 -8.93292 -8.38116 -6.46800 -0.21299 -0.00026 0.48654 0.80894 1.11017 1.21201 1.34106 1.37530 1.44778 1.48171 1.68845 2.29384 2.90951 2.94678 3.16120 3.48929 3.57824 3.81110 3.85911 3.92718 4.05692 4.10498 4.22886 4.30950 4.32697 4.45322 4.54351 4.63424 4.64885 4.68444 4.83078 4.90807 4.98179 5.13041 5.17913 5.29789 5.41278 5.89249 6.47342 6.56938 6.68596 7.17454 8.79157 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002649 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.181110 B =10566.386890 C =11018.285817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.241 1.241 7 C -0.549 4.549 8 H 0.027 0.973 9 C 0.178 3.822 10 O -0.407 6.407 11 C 0.051 3.949 12 C 0.073 3.927 13 O -0.351 6.351 14 C 0.485 3.515 15 O -0.508 6.508 16 C 0.004 3.996 17 H 0.133 0.867 18 S -0.227 6.227 19 C -0.069 4.069 20 C -0.053 4.053 21 C -0.159 4.159 22 S 0.147 5.853 23 C -0.211 4.211 24 C -0.141 4.141 25 C -0.118 4.118 26 H 0.273 0.727 27 H 0.020 0.980 28 H 0.015 0.985 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.186 0.814 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.183 -20.967 -10.427 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.164 1.164 7 C -0.587 4.587 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.327 6.327 11 C -0.026 4.026 12 C 0.000 4.000 13 O -0.268 6.268 14 C 0.326 3.674 15 O -0.396 6.396 16 C -0.127 4.127 17 H 0.151 0.849 18 S 0.001 5.999 19 C -0.218 4.218 20 C -0.093 4.093 21 C -0.277 4.277 22 S 0.413 5.587 23 C -0.346 4.346 24 C -0.172 4.172 25 C -0.132 4.132 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.172 0.828 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.203 0.797 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.002 -22.142 -10.441 29.805 hybrid contribution -1.399 1.898 1.064 2.587 sum 15.603 -20.243 -9.376 27.225 Atomic orbital electron populations 1.70038 1.08361 1.28860 1.50957 1.25881 0.95834 1.03542 0.93326 0.85579 0.79540 0.77172 0.79869 1.18342 1.19905 1.16442 1.21167 0.91076 0.93809 1.52630 0.95463 1.20372 0.93254 0.80546 0.95536 1.87917 1.20611 1.28814 1.95397 1.22754 0.82893 0.94096 1.02812 1.23333 1.00913 0.92183 0.83548 1.86591 1.73710 1.24127 1.42346 1.22720 0.75915 0.80838 0.87937 1.90640 1.38518 1.67125 1.43352 1.21608 1.02273 0.94543 0.94290 0.84891 1.87256 1.27295 1.57329 1.28004 1.23640 1.07346 0.92861 0.97976 1.20489 1.00182 0.98053 0.90571 1.24876 1.04736 0.95174 1.02883 1.84043 1.48713 1.08068 1.17885 1.25444 1.07642 0.96393 1.05156 1.20147 1.00982 0.97802 0.98268 1.18852 1.04030 0.92331 0.97987 0.91752 0.96280 0.96724 0.88742 0.91487 0.91022 0.87085 0.87671 0.82830 0.87717 0.85916 0.79681 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.01 0.72 5.47 84.65 0.46 1.18 16 3 Si 0.96 43.01 27.47 68.60 1.88 44.89 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 7 C -0.55 -33.78 9.99 25.60 0.26 -33.52 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 9 C 0.18 8.92 4.76 71.23 0.34 9.26 16 10 O -0.41 -19.17 10.30 -145.56 -1.50 -20.67 16 11 C 0.05 1.69 6.33 71.98 0.46 2.15 16 12 C 0.07 2.26 5.84 71.98 0.42 2.68 16 13 O -0.35 -12.15 10.19 -48.77 -0.50 -12.65 16 14 C 0.49 15.60 6.19 71.24 0.44 16.05 16 15 O -0.51 -17.86 15.65 21.97 0.34 -17.51 16 16 C 0.00 0.11 3.31 29.70 0.10 0.21 16 17 H 0.13 3.42 8.14 -2.39 -0.02 3.40 16 18 S -0.23 -4.89 21.63 -56.49 -1.22 -6.11 16 19 C -0.07 -0.77 6.52 71.80 0.47 -0.30 16 20 C -0.05 -0.57 5.90 29.88 0.18 -0.39 16 21 C -0.16 -2.93 6.28 24.92 0.16 -2.78 16 22 S 0.15 2.37 23.25 -56.49 -1.31 1.06 16 23 C -0.21 -4.37 11.18 66.71 0.75 -3.62 16 24 C -0.14 -3.69 8.73 21.59 0.19 -3.50 16 25 C -0.12 -2.91 5.11 -19.81 -0.10 -3.01 16 26 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 27 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 28 H 0.02 0.70 7.57 -2.39 -0.02 0.69 16 29 H 0.09 2.59 8.14 -2.38 -0.02 2.58 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 2.30 8.13 -2.39 -0.02 2.28 16 32 H 0.11 2.74 8.13 -2.39 -0.02 2.72 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.15 0.79 8.14 -2.39 -0.02 0.78 16 35 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.12 3.46 7.64 -2.91 -0.02 3.44 16 Total: -1.00 -78.38 348.91 3.12 -75.26 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.02 Total: 10.70 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 4.11 Total: -15.60 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.30 Total: -59.36 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -1.65 Total: -50.83 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.89 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.54 Total: -5.05 kcal Total: -78.38 3.12 -75.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815214729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.769 kcal (2) G-P(sol) polarization free energy of solvation -78.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds