Wall clock time and date at job start Tue Mar 31 2020 15:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86806 * 120.00068 * 2 1 4 4 H 1.48492 * 109.47174 * 240.00056 * 3 2 1 5 5 H 1.48503 * 109.46556 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47186 * 119.99792 * 3 2 1 7 7 C 1.38824 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99872 * 180.28014 * 7 2 1 9 9 O 1.34839 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.34761 * 117.00172 * 180.02562 * 9 7 2 11 11 O 1.21532 * 120.00222 * 0.02562 * 10 9 7 12 12 C 1.47449 * 119.99674 * 180.02562 * 10 9 7 13 13 C 1.39607 * 120.21954 * 308.45495 * 12 10 9 14 14 C 1.37902 * 119.95547 * 180.02562 * 13 12 10 15 15 C 1.38529 * 120.40695 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.77652 * 179.97438 * 15 14 13 17 17 F 1.39892 * 109.47074 * 0.02562 * 16 15 14 18 18 F 1.39898 * 109.47046 * 120.00742 * 16 15 14 19 19 F 1.39911 * 109.46899 * 240.00284 * 16 15 14 20 20 C 1.38055 * 120.44755 * 0.02562 * 15 14 13 21 21 C 1.39149 * 120.03017 * 359.71561 * 20 15 14 22 22 C 1.48259 * 120.20847 * 180.27845 * 21 20 15 23 23 N 1.34108 * 126.69021 * 173.82096 * 22 21 20 24 24 N 1.28993 * 107.26086 * 179.83397 * 23 22 21 25 25 N 1.28727 * 108.96258 * 0.42979 * 24 23 22 26 26 H 0.96996 * 125.32729 * 179.72067 * 25 24 23 27 27 N 1.28869 * 109.33749 * 359.72512 * 25 24 23 28 28 H 0.96993 * 120.00139 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.02451 * 0.03247 * 13 12 10 30 30 H 1.07999 * 119.79386 * 180.02562 * 14 13 12 31 31 H 1.07999 * 119.98602 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2124 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0082 -1.2022 -0.0005 8 1 3.0882 -1.2021 0.0040 9 8 1.3341 -2.3700 -0.0005 10 6 2.0681 -3.5002 -0.0005 11 8 3.2818 -3.4366 -0.0001 12 6 1.3987 -4.8139 -0.0011 13 6 0.4108 -5.0996 0.9431 14 6 -0.2114 -6.3303 0.9380 15 6 0.1370 -7.2881 -0.0003 16 6 -0.5518 -8.6285 0.0074 17 9 -1.4922 -8.6636 1.0424 18 9 -1.1987 -8.8275 -1.2170 19 9 0.3961 -9.6388 0.2035 20 6 1.1115 -7.0234 -0.9416 21 6 1.7474 -5.7858 -0.9566 22 6 2.7902 -5.4952 -1.9696 23 7 3.4002 -4.3190 -2.1769 24 7 4.2398 -4.4880 -3.1415 25 7 4.1719 -5.7082 -3.5462 26 1 4.6985 -6.0907 -4.2653 27 7 3.2946 -6.3417 -2.8463 28 1 -0.4850 0.8400 -0.0004 29 1 0.1340 -4.3573 1.6771 30 1 -0.9755 -6.5484 1.6694 31 1 1.3775 -7.7758 -1.6694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822810440.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:51 Heat of formation + Delta-G solvation = -58.699331 kcal Electronic energy + Delta-G solvation = -27327.710745 eV Core-core repulsion = 22584.841785 eV Total energy + Delta-G solvation = -4742.868960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.057 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.25012 -47.77148 -47.69863 -44.18627 -39.83987 -38.35005 -35.22384 -34.11997 -33.50917 -32.33491 -31.93333 -30.66677 -26.94011 -25.34587 -24.69155 -24.21854 -22.73350 -21.76681 -20.38848 -19.19103 -18.56898 -18.46066 -18.14479 -17.73786 -17.20370 -16.86780 -15.68062 -15.32343 -15.18252 -14.62356 -14.50581 -14.40400 -14.14692 -14.08005 -13.95898 -13.86365 -13.85194 -13.58778 -13.50672 -13.06947 -12.46925 -12.09856 -11.74340 -11.59674 -11.49489 -11.24284 -11.09134 -10.87450 -10.80149 -10.46735 -10.21917 -9.87632 -9.22813 -9.01367 -8.80817 -8.57633 -6.44194 -4.05573 0.45811 0.87980 1.42388 2.39301 2.44913 2.54545 3.10953 3.19407 3.23231 3.31116 3.55163 3.66194 3.75791 3.93776 4.00299 4.33302 4.37793 4.44429 4.74315 4.88619 5.14608 5.26171 5.31951 5.50377 5.67583 5.75893 5.85426 6.00603 6.25113 6.51503 6.55757 6.75161 7.39272 7.93556 8.42844 8.70545 9.04333 9.80718 10.73126 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.004202 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.924880 B = 6661.158315 C = 8340.249534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.365 4.365 8 H 0.099 0.901 9 O -0.201 6.201 10 C 0.426 3.574 11 O -0.510 6.510 12 C -0.001 4.001 13 C -0.082 4.082 14 C -0.058 4.058 15 C -0.187 4.187 16 C 0.514 3.486 17 F -0.176 7.176 18 F -0.176 7.176 19 F -0.177 7.177 20 C -0.036 4.036 21 C 0.015 3.985 22 C 0.207 3.793 23 N -0.204 5.204 24 N -0.054 5.054 25 N -0.237 5.237 26 H 0.471 0.529 27 N -0.298 5.298 28 H 0.271 0.729 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -15.882 -2.627 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.163 4.163 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.441 4.441 8 H 0.117 0.883 9 O -0.108 6.108 10 C 0.272 3.728 11 O -0.405 6.405 12 C -0.005 4.005 13 C -0.101 4.101 14 C -0.077 4.077 15 C -0.189 4.189 16 C 0.460 3.540 17 F -0.157 7.157 18 F -0.157 7.157 19 F -0.158 7.158 20 C -0.057 4.057 21 C 0.011 3.989 22 C -0.072 4.072 23 N -0.076 5.076 24 N -0.050 5.050 25 N -0.081 5.081 26 H 0.325 0.675 27 N -0.150 5.150 28 H 0.081 0.919 29 H 0.173 0.827 30 H 0.166 0.834 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.513 -15.309 -2.952 15.599 hybrid contribution 0.341 -0.027 -0.320 0.468 sum 0.855 -15.335 -3.271 15.704 Atomic orbital electron populations 1.69966 1.06048 1.27963 1.45665 1.25362 0.95816 0.98863 0.96294 0.85727 0.78658 0.79261 0.79491 1.19340 1.20407 1.19407 1.21270 0.92607 0.79452 1.50811 0.88299 1.83940 1.38960 1.13040 1.74871 1.20264 0.86200 0.84975 0.81410 1.90714 1.14127 1.87066 1.48591 1.19693 0.94172 0.92796 0.93817 1.21391 0.93376 0.96675 0.98612 1.21082 0.98228 0.91957 0.96411 1.19840 1.02565 0.94195 1.02261 1.18167 0.76763 0.85427 0.73692 1.93164 1.66585 1.96783 1.59176 1.93224 1.82396 1.95810 1.44285 1.93223 1.64492 1.63244 1.94835 1.20623 0.92848 0.95498 0.96683 1.16899 0.94848 0.93889 0.93260 1.23315 0.99567 0.87239 0.97095 1.76795 1.03746 1.20539 1.06562 1.79077 1.17473 1.00254 1.08227 1.47720 1.26757 1.06914 1.26709 0.67545 1.74792 1.07075 1.25126 1.08033 0.91913 0.82724 0.83439 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 13.67 55.49 0.76 -23.79 16 2 C 0.04 1.13 5.50 -17.52 -0.10 1.04 16 3 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.37 -10.56 9.65 30.95 0.30 -10.26 16 8 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 9 O -0.20 -5.61 9.73 -21.68 -0.21 -5.83 16 10 C 0.43 10.46 6.23 34.48 0.21 10.68 16 11 O -0.51 -13.54 13.61 -19.29 -0.26 -13.80 16 12 C 0.00 -0.02 5.78 -104.71 -0.61 -0.63 16 13 C -0.08 -1.28 9.77 -39.19 -0.38 -1.67 16 14 C -0.06 -0.73 9.41 -39.60 -0.37 -1.10 16 15 C -0.19 -2.37 5.38 -104.58 -0.56 -2.93 16 16 C 0.51 5.88 3.31 36.01 0.12 6.00 16 17 F -0.18 -1.93 15.95 2.25 0.04 -1.90 16 18 F -0.18 -2.07 17.23 2.25 0.04 -2.03 16 19 F -0.18 -2.04 17.23 2.25 0.04 -2.00 16 20 C -0.04 -0.50 9.22 -39.31 -0.36 -0.86 16 21 C 0.01 0.25 5.91 -104.52 -0.62 -0.36 16 22 C 0.21 3.82 7.67 -156.27 -1.20 2.62 16 23 N -0.20 -4.33 8.81 32.13 0.28 -4.04 16 24 N -0.05 -0.95 13.47 60.35 0.81 -0.13 16 25 N -0.24 -3.01 7.90 60.35 0.48 -2.53 16 26 H 0.47 3.23 8.96 -340.36 -3.05 0.18 16 27 N -0.30 -4.41 12.10 32.15 0.39 -4.02 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.16 2.30 8.06 -52.49 -0.42 1.88 16 30 H 0.15 1.42 7.13 -52.49 -0.37 1.05 16 31 H 0.15 1.73 7.89 -52.49 -0.41 1.32 16 LS Contribution 305.59 15.07 4.61 4.61 Total: -1.00 -34.32 305.59 -5.38 -39.70 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -3.76 Total: -2.76 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -3.57 Total: 2.53 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 2.72 Total: -34.52 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.47 Total: -19.63 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.11 Total: -5.93 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.32 -5.38 -39.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822810440.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.998 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds