Wall clock time and date at job start Tue Mar 31 2020 14:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 115.54647 * 2 1 4 4 C 1.50695 * 109.47454 * 295.16973 * 3 2 1 5 5 O 1.21282 * 119.99561 * 358.18183 * 4 3 2 6 6 N 1.34768 * 120.00233 * 178.17538 * 4 3 2 7 7 C 1.39470 * 120.00125 * 185.52315 * 6 4 3 8 8 C 1.38603 * 119.57679 * 174.69409 * 7 6 4 9 9 C 1.40813 * 118.79122 * 180.02562 * 8 7 6 10 10 C 1.41547 * 120.99451 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99852 * 21.87338 * 10 9 8 12 12 C 1.40031 * 119.99738 * 201.87841 * 10 9 8 13 13 N 1.30741 * 120.00036 * 31.95826 * 12 10 9 14 14 Si 1.86803 * 120.00025 * 211.95316 * 12 10 9 15 15 H 1.48493 * 109.47171 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.46670 * 300.00238 * 14 12 10 17 17 H 1.48497 * 109.47093 * 59.99736 * 14 12 10 18 18 C 1.41176 * 118.00857 * 0.24899 * 9 8 7 19 19 C 1.37591 * 119.01213 * 359.48048 * 18 9 8 20 20 N 1.32079 * 121.11224 * 0.53500 * 19 18 9 21 21 C 1.53002 * 117.49932 * 145.66862 * 2 1 3 22 22 C 1.52993 * 117.50377 * 214.33072 * 2 1 3 23 23 Cl 1.80306 * 117.49605 * 359.97438 * 22 2 1 24 24 Cl 1.80300 * 117.50162 * 144.97065 * 22 2 1 25 25 H 1.08997 * 109.47231 * 68.64813 * 1 2 3 26 26 H 1.09001 * 109.47183 * 188.64335 * 1 2 3 27 27 H 1.08993 * 109.47745 * 308.64598 * 1 2 3 28 28 H 1.09000 * 109.46759 * 175.16461 * 3 2 1 29 29 H 1.09002 * 109.46796 * 55.17479 * 3 2 1 30 30 H 0.97008 * 119.99994 * 5.52463 * 6 4 3 31 31 H 1.07994 * 120.60842 * 359.97438 * 8 7 6 32 32 H 0.96997 * 120.00486 * 4.25117 * 13 12 10 33 33 H 1.07997 * 120.48807 * 179.75082 * 18 9 8 34 34 H 1.08006 * 119.44268 * 180.25207 * 19 18 9 35 35 H 1.08997 * 117.49898 * 215.00501 * 21 2 1 36 36 H 1.09000 * 117.49828 * 0.02662 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 1.8613 2.0943 -1.2858 5 8 1.1952 1.5397 -2.1342 6 7 2.3075 3.3490 -1.4931 7 6 1.9091 4.0520 -2.6298 8 6 2.2829 5.3782 -2.7800 9 6 1.8711 6.0724 -3.9338 10 6 2.2258 7.4280 -4.1345 11 1 3.0785 7.8449 -3.6193 12 6 1.4711 8.2283 -5.0009 13 7 0.1879 8.0168 -5.1349 14 14 2.2976 9.5982 -5.9650 15 1 1.2875 10.2928 -6.8030 16 1 2.9089 10.5684 -5.0214 17 1 3.3534 9.0229 -6.8364 18 6 1.0888 5.3777 -4.8817 19 6 0.7721 4.0593 -4.6479 20 7 1.1783 3.4438 -3.5521 21 6 2.2364 -1.1207 0.7654 22 6 2.2365 -1.1206 -0.7653 23 17 1.2023 -2.3407 -1.5977 24 17 3.7826 -0.7133 -1.5988 25 1 -0.3633 0.3742 -0.9571 26 1 -0.3633 -1.0160 0.1544 27 1 -0.3634 0.6417 0.8025 28 1 3.2704 1.2666 0.0866 29 1 1.8170 1.9613 0.8436 30 1 2.9059 3.7631 -0.8516 31 1 2.8784 5.8705 -2.0255 32 1 -0.2530 7.3470 -4.5892 33 1 0.7479 5.8724 -5.7791 34 1 0.1775 3.5199 -5.3704 35 1 3.1713 -0.8746 1.2689 36 1 1.6112 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826999464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:06 Heat of formation + Delta-G solvation = 5.155587 kcal Electronic energy + Delta-G solvation = -22773.380875 eV Core-core repulsion = 19116.954272 eV Total energy + Delta-G solvation = -3656.426604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04284 -38.73165 -37.53961 -36.05377 -35.78137 -34.68346 -33.66411 -30.53889 -30.18984 -28.71086 -27.70351 -25.74971 -22.53905 -22.26276 -21.91299 -20.20245 -19.17542 -18.21198 -17.00092 -16.38242 -16.10176 -15.50568 -14.75311 -14.57414 -14.41516 -14.16797 -13.93112 -13.42997 -13.26115 -12.96494 -12.77892 -12.54776 -12.34759 -12.26974 -11.95169 -11.75872 -11.63699 -11.59711 -11.24182 -11.18971 -10.80665 -10.53100 -10.45895 -10.39121 -10.09300 -9.76072 -9.72719 -9.35015 -9.13163 -8.23704 -7.79279 -7.42605 -7.10688 -4.70420 1.15445 2.10657 2.44315 2.78377 2.92298 3.09368 3.19029 3.29748 3.42625 3.52270 3.91925 3.92776 4.13923 4.49365 4.54742 4.72965 5.05049 5.17709 5.25323 5.33940 5.50915 5.55820 5.68779 5.74225 5.92228 6.25663 6.48313 6.50260 6.64403 6.77458 7.26094 7.30075 7.47293 7.61447 7.84776 7.99450 8.19842 8.54070 8.67837 8.79271 9.60424 9.86236 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.002729 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.994528 B =10258.220807 C =10357.405299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.116 4.116 4 C 0.500 3.500 5 O -0.460 6.460 6 N -0.664 5.664 7 C 0.363 3.637 8 C -0.315 4.315 9 C 0.131 3.869 10 C -0.517 4.517 11 H 0.080 0.920 12 C 0.045 3.955 13 N -0.775 5.775 14 Si 1.064 2.936 15 H -0.273 1.273 16 H -0.275 1.275 17 H -0.272 1.272 18 C -0.286 4.286 19 C 0.127 3.873 20 N -0.561 5.561 21 C -0.144 4.144 22 C 0.017 3.983 23 Cl -0.093 7.093 24 Cl -0.093 7.093 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.405 0.595 31 H 0.100 0.900 32 H 0.301 0.699 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -12.757 12.622 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.066 4.066 3 C -0.156 4.156 4 C 0.283 3.717 5 O -0.328 6.328 6 N -0.310 5.310 7 C 0.136 3.864 8 C -0.341 4.341 9 C 0.123 3.877 10 C -0.546 4.546 11 H 0.098 0.902 12 C -0.180 4.180 13 N -0.397 5.397 14 Si 0.887 3.113 15 H -0.197 1.197 16 H -0.200 1.200 17 H -0.198 1.198 18 C -0.309 4.309 19 C -0.024 4.024 20 N -0.281 5.281 21 C -0.182 4.182 22 C -0.034 4.034 23 Cl -0.065 7.065 24 Cl -0.066 7.066 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.239 0.761 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.804 -13.034 10.900 17.221 hybrid contribution 1.051 -0.176 1.232 1.629 sum 3.855 -13.210 12.132 18.345 Atomic orbital electron populations 1.21516 0.89553 1.02516 1.04526 1.21920 0.96915 0.89713 0.98007 1.21401 1.02263 0.93821 0.98112 1.20314 0.81244 0.81656 0.88439 1.90804 1.34599 1.63714 1.43707 1.43466 1.49051 1.15057 1.23400 1.18037 0.93753 0.87895 0.86686 1.21061 1.16968 0.94118 1.01946 1.17556 0.88242 0.93145 0.88778 1.20534 1.14128 0.95225 1.24749 0.90237 1.27111 0.94396 1.01379 0.95152 1.70443 1.09843 1.26570 1.32796 0.83649 0.76246 0.74632 0.76742 1.19730 1.19990 1.19755 1.21962 1.10893 0.96047 1.02024 1.21814 0.95816 0.91764 0.93034 1.67289 1.19056 1.37826 1.03902 1.24216 1.03723 1.00639 0.89610 1.26779 0.87727 0.98229 0.90711 1.98734 1.68252 1.58045 1.81511 1.98750 1.32917 1.93481 1.81427 0.89146 0.91828 0.91415 0.88409 0.87565 0.76069 0.88203 0.88580 0.87169 0.85856 0.86289 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.75 37.16 0.33 -1.06 16 2 C -0.06 -0.69 1.61 -154.51 -0.25 -0.94 16 3 C -0.12 -1.27 5.03 -27.88 -0.14 -1.41 16 4 C 0.50 8.34 7.54 -10.99 -0.08 8.25 16 5 O -0.46 -9.52 12.74 5.56 0.07 -9.44 16 6 N -0.66 -11.70 5.39 -11.49 -0.06 -11.76 16 7 C 0.36 8.32 7.42 -154.70 -1.15 7.17 16 8 C -0.31 -7.51 9.73 -38.47 -0.37 -7.88 16 9 C 0.13 3.40 5.35 -106.55 -0.57 2.83 16 10 C -0.52 -13.27 8.99 -37.65 -0.34 -13.61 16 11 H 0.08 1.97 8.01 -52.49 -0.42 1.55 16 12 C 0.04 1.10 4.84 -17.34 -0.08 1.02 16 13 N -0.77 -19.87 12.36 55.55 0.69 -19.18 16 14 Si 1.06 20.67 30.03 -169.99 -5.11 15.57 16 15 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 16 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 18 C -0.29 -7.31 8.20 -38.70 -0.32 -7.62 16 19 C 0.13 3.14 11.15 -17.68 -0.20 2.94 16 20 N -0.56 -13.99 7.85 -12.52 -0.10 -14.09 16 21 C -0.14 -1.15 9.58 -26.69 -0.26 -1.41 16 22 C 0.02 0.20 3.58 -26.70 -0.10 0.11 16 23 Cl -0.09 -1.18 27.90 -51.86 -1.45 -2.62 16 24 Cl -0.09 -1.24 27.70 -51.86 -1.44 -2.68 16 25 H 0.09 1.33 6.65 -51.93 -0.35 0.98 16 26 H 0.06 0.62 7.40 -51.93 -0.38 0.24 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.10 0.92 7.24 -51.93 -0.38 0.55 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.40 5.50 8.70 -40.82 -0.36 5.15 16 31 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.30 7.97 7.02 -40.82 -0.29 7.69 16 33 H 0.11 2.85 6.60 -52.49 -0.35 2.50 16 34 H 0.12 2.74 8.06 -52.48 -0.42 2.32 16 35 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -31.26 337.36 -9.68 -40.94 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -3.85 Total: 9.80 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -3.53 Total: -11.61 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.53 Total: -45.03 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.11 Total: 15.57 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -2.88 Total: -5.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.26 -9.68 -40.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826999464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.094 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds