Wall clock time and date at job start Tue Mar 31 2020 14:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 115.54647 * 2 1 4 4 C 1.50695 * 109.47454 * 295.16973 * 3 2 1 5 5 O 1.21282 * 119.99561 * 358.18183 * 4 3 2 6 6 N 1.34768 * 120.00233 * 178.17538 * 4 3 2 7 7 C 1.39470 * 120.00125 * 185.52315 * 6 4 3 8 8 C 1.38603 * 119.57679 * 174.69409 * 7 6 4 9 9 C 1.40813 * 118.79122 * 180.02562 * 8 7 6 10 10 C 1.41547 * 120.99451 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99852 * 21.87338 * 10 9 8 12 12 C 1.40031 * 119.99738 * 201.87841 * 10 9 8 13 13 N 1.30741 * 120.00036 * 31.95826 * 12 10 9 14 14 Si 1.86803 * 120.00025 * 211.95316 * 12 10 9 15 15 H 1.48493 * 109.47171 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.46670 * 300.00238 * 14 12 10 17 17 H 1.48497 * 109.47093 * 59.99736 * 14 12 10 18 18 C 1.41176 * 118.00857 * 0.24899 * 9 8 7 19 19 C 1.37591 * 119.01213 * 359.48048 * 18 9 8 20 20 N 1.32079 * 121.11224 * 0.53500 * 19 18 9 21 21 C 1.53002 * 117.49932 * 145.66862 * 2 1 3 22 22 C 1.52993 * 117.50377 * 214.33072 * 2 1 3 23 23 Cl 1.80306 * 117.49605 * 359.97438 * 22 2 1 24 24 Cl 1.80300 * 117.50162 * 144.97065 * 22 2 1 25 25 H 1.08997 * 109.47231 * 68.64813 * 1 2 3 26 26 H 1.09001 * 109.47183 * 188.64335 * 1 2 3 27 27 H 1.08993 * 109.47745 * 308.64598 * 1 2 3 28 28 H 1.09000 * 109.46759 * 175.16461 * 3 2 1 29 29 H 1.09002 * 109.46796 * 55.17479 * 3 2 1 30 30 H 0.97008 * 119.99994 * 5.52463 * 6 4 3 31 31 H 1.07994 * 120.60842 * 359.97438 * 8 7 6 32 32 H 0.96997 * 120.00486 * 4.25117 * 13 12 10 33 33 H 1.07997 * 120.48807 * 179.75082 * 18 9 8 34 34 H 1.08006 * 119.44268 * 180.25207 * 19 18 9 35 35 H 1.08997 * 117.49898 * 215.00501 * 21 2 1 36 36 H 1.09000 * 117.49828 * 0.02662 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 1.8613 2.0943 -1.2858 5 8 1.1952 1.5397 -2.1342 6 7 2.3075 3.3490 -1.4931 7 6 1.9091 4.0520 -2.6298 8 6 2.2829 5.3782 -2.7800 9 6 1.8711 6.0724 -3.9338 10 6 2.2258 7.4280 -4.1345 11 1 3.0785 7.8449 -3.6193 12 6 1.4711 8.2283 -5.0009 13 7 0.1879 8.0168 -5.1349 14 14 2.2976 9.5982 -5.9650 15 1 1.2875 10.2928 -6.8030 16 1 2.9089 10.5684 -5.0214 17 1 3.3534 9.0229 -6.8364 18 6 1.0888 5.3777 -4.8817 19 6 0.7721 4.0593 -4.6479 20 7 1.1783 3.4438 -3.5521 21 6 2.2364 -1.1207 0.7654 22 6 2.2365 -1.1206 -0.7653 23 17 1.2023 -2.3407 -1.5977 24 17 3.7826 -0.7133 -1.5988 25 1 -0.3633 0.3742 -0.9571 26 1 -0.3633 -1.0160 0.1544 27 1 -0.3634 0.6417 0.8025 28 1 3.2704 1.2666 0.0866 29 1 1.8170 1.9613 0.8436 30 1 2.9059 3.7631 -0.8516 31 1 2.8784 5.8705 -2.0255 32 1 -0.2530 7.3470 -4.5892 33 1 0.7479 5.8724 -5.7791 34 1 0.1775 3.5199 -5.3704 35 1 3.1713 -0.8746 1.2689 36 1 1.6112 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826999464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:05 Heat of formation + Delta-G solvation = -12.261225 kcal Electronic energy + Delta-G solvation = -22774.136125 eV Core-core repulsion = 19116.954272 eV Total energy + Delta-G solvation = -3657.181854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.40786 -40.13016 -38.87582 -36.97515 -36.76010 -36.40361 -35.33053 -32.45721 -31.42908 -29.93223 -28.89621 -27.66356 -23.93352 -23.73235 -23.27835 -21.71268 -20.21748 -19.97414 -18.36512 -17.68408 -17.24730 -16.62652 -16.37768 -16.34736 -15.91270 -15.72895 -15.14684 -14.85666 -14.64746 -14.36079 -14.15009 -13.98728 -13.64838 -13.32087 -13.12493 -12.95084 -12.84630 -12.55865 -12.54189 -12.36542 -12.12576 -11.99242 -11.82380 -11.74495 -11.44221 -11.34165 -10.97529 -10.79062 -10.54178 -10.19259 -9.65451 -9.34107 -8.91044 -6.68895 0.29718 0.64229 0.93350 1.21952 1.51715 1.64872 1.81597 1.94497 1.96615 2.29203 2.38887 2.69427 3.08459 3.32273 3.58319 3.61108 3.80914 3.96318 4.21485 4.56641 4.57396 4.61584 4.63729 4.72838 4.77970 4.79456 4.87801 4.89690 4.95768 5.33482 5.34138 5.46493 5.53215 5.71626 6.06219 6.17538 6.56511 6.60176 6.78933 7.35281 7.78715 7.88807 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.002729 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.994528 B =10258.220807 C =10357.405299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.077 4.077 3 C -0.103 4.103 4 C 0.494 3.506 5 O -0.502 6.502 6 N -0.656 5.656 7 C 0.364 3.636 8 C -0.326 4.326 9 C 0.106 3.894 10 C -0.541 4.541 11 H 0.084 0.916 12 C 0.012 3.988 13 N -0.792 5.792 14 Si 1.117 2.883 15 H -0.271 1.271 16 H -0.252 1.252 17 H -0.265 1.265 18 C -0.302 4.302 19 C 0.122 3.878 20 N -0.579 5.579 21 C -0.099 4.099 22 C -0.010 4.010 23 Cl -0.112 7.112 24 Cl -0.115 7.115 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.120 0.880 29 H 0.143 0.857 30 H 0.424 0.576 31 H 0.119 0.881 32 H 0.285 0.715 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.225 -12.920 15.093 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.079 4.079 3 C -0.143 4.143 4 C 0.280 3.720 5 O -0.373 6.373 6 N -0.304 5.304 7 C 0.136 3.864 8 C -0.352 4.352 9 C 0.098 3.902 10 C -0.570 4.570 11 H 0.102 0.898 12 C -0.208 4.208 13 N -0.412 5.412 14 Si 0.933 3.067 15 H -0.196 1.196 16 H -0.176 1.176 17 H -0.190 1.190 18 C -0.326 4.326 19 C -0.030 4.030 20 N -0.300 5.300 21 C -0.137 4.137 22 C -0.062 4.062 23 Cl -0.085 7.085 24 Cl -0.088 7.088 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.138 0.862 29 H 0.161 0.839 30 H 0.263 0.737 31 H 0.137 0.863 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.183 -13.218 13.438 19.308 hybrid contribution 0.594 -0.233 0.543 0.837 sum 4.776 -13.451 13.981 19.980 Atomic orbital electron populations 1.21445 0.90138 1.03333 1.02827 1.22017 0.96664 0.89996 0.99180 1.21448 1.03798 0.93599 0.95454 1.21397 0.79804 0.80875 0.89896 1.90801 1.36289 1.64511 1.45702 1.43538 1.49255 1.15512 1.22109 1.18330 0.92400 0.88144 0.87529 1.21267 1.17342 0.94730 1.01857 1.17935 0.88685 0.93925 0.89672 1.20794 1.14669 0.95524 1.26047 0.89833 1.28563 0.94066 1.03021 0.95198 1.70560 1.10716 1.26789 1.33184 0.83018 0.75459 0.72298 0.75940 1.19550 1.17568 1.18964 1.21906 1.12129 0.96543 1.02059 1.22098 0.95716 0.91632 0.93551 1.67424 1.19878 1.38255 1.04398 1.24423 1.04330 0.98257 0.86641 1.27211 0.87162 0.99178 0.92601 1.98728 1.68793 1.58694 1.82234 1.98743 1.34160 1.93659 1.82219 0.93334 0.90806 0.89569 0.86184 0.83920 0.73738 0.86289 0.90320 0.88348 0.84361 0.83489 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.75 71.98 0.63 -1.83 16 2 C -0.08 -1.43 1.61 -52.18 -0.08 -1.52 16 3 C -0.10 -1.91 5.03 29.85 0.15 -1.76 16 4 C 0.49 15.72 7.54 87.66 0.66 16.38 16 5 O -0.50 -20.78 12.74 -3.03 -0.04 -20.82 16 6 N -0.66 -22.18 5.39 -308.67 -1.66 -23.84 16 7 C 0.36 16.64 7.42 132.75 0.98 17.63 16 8 C -0.33 -15.59 9.73 22.99 0.22 -15.36 16 9 C 0.11 5.62 5.35 -21.11 -0.11 5.50 16 10 C -0.54 -28.10 8.99 23.52 0.21 -27.89 16 11 H 0.08 4.15 8.01 -2.91 -0.02 4.12 16 12 C 0.01 0.58 4.84 85.29 0.41 0.99 16 13 N -0.79 -41.49 12.36 21.84 0.27 -41.22 16 14 Si 1.12 41.01 30.03 68.60 2.06 43.07 16 15 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 16 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 17 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 18 C -0.30 -16.02 8.20 22.84 0.19 -15.84 16 19 C 0.12 6.19 11.15 84.50 0.94 7.13 16 20 N -0.58 -29.34 7.85 -193.53 -1.52 -30.86 16 21 C -0.10 -1.15 9.58 30.62 0.29 -0.86 16 22 C -0.01 -0.22 3.58 30.62 0.11 -0.11 16 23 Cl -0.11 -2.76 27.90 -2.72 -0.08 -2.84 16 24 Cl -0.11 -2.91 27.70 -2.72 -0.08 -2.98 16 25 H 0.05 1.43 6.65 -2.39 -0.02 1.41 16 26 H 0.07 1.31 7.40 -2.39 -0.02 1.29 16 27 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.12 1.75 7.24 -2.39 -0.02 1.73 16 29 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.42 10.51 8.70 -92.70 -0.81 9.70 16 31 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 32 H 0.28 15.71 7.02 -92.71 -0.65 15.06 16 33 H 0.10 5.33 6.60 -2.91 -0.02 5.31 16 34 H 0.14 6.35 8.06 -2.91 -0.02 6.32 16 35 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -71.35 337.36 4.01 -67.34 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.45 Total: 29.67 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 4.61 Total: -17.53 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -2.91 Total: -95.92 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.04 Total: -20.82 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.06 Total: 43.07 kcal Atomic # 17 Polarization: -5.67 SS G_CDS: -0.15 Total: -5.82 kcal Total: -71.35 4.01 -67.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826999464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.081 kcal (2) G-P(sol) polarization free energy of solvation -71.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds