Wall clock time and date at job start Tue Mar 31 2020 15:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76208 * 102.99812 * 2 1 4 4 C 1.38922 * 120.02574 * 180.02562 * 3 2 1 5 5 C 1.38086 * 119.97310 * 180.02562 * 4 3 2 6 6 C 1.38710 * 120.02820 * 0.02562 * 5 4 3 7 7 O 1.36001 * 119.97559 * 179.97438 * 6 5 4 8 8 S 1.52206 * 113.99636 * 90.00381 * 7 6 5 9 9 O 1.42104 * 104.27763 * 318.92485 * 8 7 6 10 10 O 1.42102 * 104.27526 * 191.07077 * 8 7 6 11 11 C 1.81402 * 104.44949 * 75.00040 * 8 7 6 12 12 C 1.52999 * 109.46808 * 184.33655 * 11 8 7 13 13 C 1.50707 * 115.54972 * 299.66073 * 12 11 8 14 14 H 1.08003 * 119.99790 * 95.16759 * 13 12 11 15 15 C 1.37874 * 120.00399 * 275.17077 * 13 12 11 16 16 N 1.31517 * 119.99933 * 7.38336 * 15 13 12 17 17 Si 1.86793 * 120.00153 * 187.38907 * 15 13 12 18 18 H 1.48498 * 109.47372 * 269.99862 * 17 15 13 19 19 H 1.48508 * 109.47292 * 29.99749 * 17 15 13 20 20 H 1.48500 * 109.47208 * 149.99468 * 17 15 13 21 21 C 1.52994 * 117.50074 * 85.33689 * 12 11 8 22 22 C 1.53008 * 117.49871 * 153.99897 * 12 11 8 23 23 C 1.38712 * 120.04928 * 0.23641 * 6 5 4 24 24 C 1.38091 * 120.02282 * 359.48734 * 23 6 5 25 25 H 1.08996 * 109.47465 * 300.00007 * 1 2 3 26 26 H 1.09002 * 109.47134 * 60.00365 * 1 2 3 27 27 H 1.09000 * 109.46610 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00924 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.98584 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47279 * 64.33569 * 11 8 7 31 31 H 1.08996 * 109.46836 * 304.32960 * 11 8 7 32 32 H 0.96999 * 119.99918 * 355.50198 * 16 15 13 33 33 H 1.09012 * 117.49805 * 214.99579 * 21 12 11 34 34 H 1.08997 * 117.50094 * 0.02562 * 21 12 11 35 35 H 1.08996 * 117.49489 * 359.97050 * 22 12 11 36 36 H 1.08992 * 117.49801 * 144.97049 * 22 12 11 37 37 H 1.08000 * 119.99130 * 179.74585 * 23 6 5 38 38 H 1.08002 * 120.01318 * 180.26378 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1237 -0.0005 5 6 3.8480 3.4695 0.0000 6 6 2.8331 4.4150 0.0016 7 8 3.1390 5.7402 0.0027 8 16 3.2772 6.3447 -1.3874 9 8 3.9770 5.3566 -2.1312 10 8 3.8448 7.6269 -1.1570 11 6 1.5714 6.5016 -1.9843 12 6 1.5811 7.0034 -3.4296 13 6 2.2249 8.3487 -3.6463 14 1 3.2609 8.4097 -3.9451 15 6 1.4914 9.5016 -3.4628 16 7 0.2777 9.4359 -2.9605 17 14 2.2213 11.1569 -3.9280 18 1 2.9419 11.7258 -2.7609 19 1 3.1696 10.9802 -5.0571 20 1 1.1326 12.0809 -4.3360 21 6 1.7335 5.9605 -4.5386 22 6 0.3828 6.6437 -4.3104 23 6 1.5065 4.0100 0.0076 24 6 1.1947 2.6648 0.0013 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 4.3290 1.3877 -0.0005 29 1 4.8806 3.7860 0.0000 30 1 1.0307 7.2104 -1.3572 31 1 1.0804 5.5294 -1.9406 32 1 -0.1264 8.5728 -2.7799 33 1 2.2995 6.2474 -5.4250 34 1 1.8264 4.9167 -4.2386 35 1 -0.4121 6.0492 -3.8603 36 1 0.0600 7.3802 -5.0462 37 1 0.7170 4.7470 0.0130 38 1 0.1617 2.3496 0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829736727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:52 Heat of formation + Delta-G solvation = -56.862884 kcal Electronic energy + Delta-G solvation = -24073.016609 eV Core-core repulsion = 20521.528439 eV Total energy + Delta-G solvation = -3551.488171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90859 -38.09663 -37.13892 -36.49126 -35.37979 -32.02649 -31.68899 -30.72122 -29.17650 -28.47965 -25.05077 -23.72148 -23.16890 -21.46382 -20.66596 -19.67387 -18.22854 -17.91632 -17.32908 -17.05174 -16.48922 -15.42620 -15.32829 -14.98041 -14.56815 -14.23121 -14.12710 -13.87843 -13.74692 -13.44397 -13.17455 -13.12464 -13.07567 -12.59714 -12.33952 -11.99288 -11.95924 -11.46216 -11.40606 -11.34423 -11.20988 -10.78584 -10.71807 -10.64857 -10.42157 -10.11124 -9.90469 -9.72563 -9.37273 -8.71793 -8.52479 -8.40111 -7.72215 -6.49739 -4.28765 0.35388 0.97493 1.09375 1.14539 1.99866 2.65907 3.23311 3.45466 3.48734 3.63441 4.23911 4.44942 4.46900 4.47820 4.55744 4.65676 4.67124 4.84449 4.90013 5.03303 5.06472 5.16440 5.26872 5.42756 5.48855 5.59023 5.68826 5.85796 5.96146 5.97371 6.05443 6.11765 6.26282 6.48435 6.56687 6.69104 6.94707 7.12366 7.98116 8.30501 8.73006 9.50622 10.90285 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.003775 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.908836 B = 7415.182718 C = 8028.747935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.107 6.107 3 C -0.080 4.080 4 C -0.083 4.083 5 C -0.074 4.074 6 C 0.077 3.923 7 O -0.679 6.679 8 S 2.596 3.404 9 O -0.964 6.964 10 O -0.911 6.911 11 C -0.589 4.589 12 C 0.023 3.977 13 C -0.594 4.594 14 H 0.064 0.936 15 C 0.040 3.960 16 N -0.896 5.896 17 Si 1.066 2.934 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.189 4.189 22 C -0.163 4.163 23 C -0.112 4.112 24 C -0.117 4.117 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.274 0.726 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.146 0.854 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 -17.975 7.227 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.136 5.864 3 C -0.193 4.193 4 C -0.107 4.107 5 C -0.096 4.096 6 C 0.033 3.967 7 O -0.637 6.637 8 S 2.695 3.305 9 O -0.962 6.962 10 O -0.909 6.909 11 C -0.719 4.719 12 C 0.021 3.979 13 C -0.631 4.631 14 H 0.082 0.918 15 C -0.167 4.167 16 N -0.530 5.530 17 Si 0.894 3.106 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.227 4.227 22 C -0.202 4.202 23 C -0.133 4.133 24 C -0.141 4.141 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.128 0.872 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.163 0.837 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.235 -17.248 7.488 18.805 hybrid contribution -1.350 -0.317 -0.124 1.392 sum -1.115 -17.565 7.364 19.079 Atomic orbital electron populations 1.23741 0.94547 1.07377 1.06072 1.85502 1.06648 1.02106 1.92158 1.21849 0.96694 0.97111 1.03655 1.20643 0.94610 0.95124 1.00286 1.21253 0.99820 0.91919 0.96583 1.18040 0.93628 0.78405 1.06595 1.85868 1.89363 1.28821 1.59639 1.05422 0.78465 0.74354 0.72289 1.93548 1.71302 1.59880 1.71495 1.93601 1.75430 1.40216 1.81663 1.30382 1.22945 1.07775 1.10838 1.18502 1.00847 0.95379 0.83172 1.21422 0.99327 0.88971 1.53339 0.91809 1.25842 0.95281 1.03236 0.92333 1.70750 1.15387 1.29350 1.37466 0.83587 0.75439 0.74659 0.76961 1.20715 1.21027 1.20883 1.23060 1.01134 0.96206 1.02256 1.22788 0.90453 1.02606 1.04316 1.21324 0.95015 0.97061 0.99918 1.20998 0.98892 0.91652 1.02560 0.89475 0.89342 0.87173 0.83982 0.83641 0.85130 0.87927 0.91447 0.89128 0.90617 0.91240 0.89175 0.83679 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.15 101.05 0.92 0.06 16 2 S -0.11 -0.95 22.56 -107.50 -2.43 -3.37 16 3 C -0.08 -0.89 6.11 -39.07 -0.24 -1.13 16 4 C -0.08 -0.97 9.79 -39.38 -0.39 -1.36 16 5 C -0.07 -1.04 9.04 -39.46 -0.36 -1.39 16 6 C 0.08 1.22 4.79 -39.23 -0.19 1.03 16 7 O -0.68 -12.46 10.05 -52.07 -0.52 -12.99 16 8 S 2.60 55.72 4.84 -107.50 -0.52 55.20 16 9 O -0.96 -21.02 16.26 -67.04 -1.09 -22.11 16 10 O -0.91 -23.20 17.49 -67.04 -1.17 -24.38 16 11 C -0.59 -12.32 5.40 37.16 0.20 -12.12 16 12 C 0.02 0.56 0.95 -155.66 -0.15 0.41 16 13 C -0.59 -16.39 7.80 -34.44 -0.27 -16.66 16 14 H 0.06 1.81 7.82 -52.48 -0.41 1.40 16 15 C 0.04 1.13 5.38 -17.82 -0.10 1.03 16 16 N -0.90 -25.64 13.57 55.43 0.75 -24.89 16 17 Si 1.07 25.35 29.91 -169.99 -5.08 20.27 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.19 -4.06 9.95 -26.69 -0.27 -4.32 16 22 C -0.16 -3.56 8.76 -26.69 -0.23 -3.79 16 23 C -0.11 -1.47 8.42 -39.46 -0.33 -1.80 16 24 C -0.12 -1.29 9.36 -39.38 -0.37 -1.65 16 25 H 0.09 0.44 7.74 -51.93 -0.40 0.03 16 26 H 0.09 0.49 7.75 -51.92 -0.40 0.09 16 27 H 0.11 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.13 2.78 7.77 -51.92 -0.40 2.38 16 31 H 0.10 1.75 6.29 -51.93 -0.33 1.42 16 32 H 0.27 7.60 6.16 -40.82 -0.25 7.35 16 33 H 0.09 1.94 8.14 -51.92 -0.42 1.51 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 37 H 0.15 1.67 7.43 -52.49 -0.39 1.28 16 38 H 0.14 1.10 5.87 -52.49 -0.31 0.79 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -33.64 344.56 -11.28 -44.91 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.65 Total: 3.85 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: -1.76 Total: -41.69 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.75 Total: -24.89 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -2.79 Total: -59.48 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Atomic # 16 Polarization: 54.77 SS G_CDS: -2.95 Total: 51.83 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.64 -11.28 -44.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829736727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.950 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds