Wall clock time and date at job start Tue Mar 31 2020 15:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76208 * 102.99812 * 2 1 4 4 C 1.38922 * 120.02574 * 180.02562 * 3 2 1 5 5 C 1.38086 * 119.97310 * 180.02562 * 4 3 2 6 6 C 1.38710 * 120.02820 * 0.02562 * 5 4 3 7 7 O 1.36001 * 119.97559 * 179.97438 * 6 5 4 8 8 S 1.52206 * 113.99636 * 90.00381 * 7 6 5 9 9 O 1.42104 * 104.27763 * 318.92485 * 8 7 6 10 10 O 1.42102 * 104.27526 * 191.07077 * 8 7 6 11 11 C 1.81402 * 104.44949 * 75.00040 * 8 7 6 12 12 C 1.52999 * 109.46808 * 184.33655 * 11 8 7 13 13 C 1.50707 * 115.54972 * 299.66073 * 12 11 8 14 14 H 1.08003 * 119.99790 * 95.16759 * 13 12 11 15 15 C 1.37874 * 120.00399 * 275.17077 * 13 12 11 16 16 N 1.31517 * 119.99933 * 7.38336 * 15 13 12 17 17 Si 1.86793 * 120.00153 * 187.38907 * 15 13 12 18 18 H 1.48498 * 109.47372 * 269.99862 * 17 15 13 19 19 H 1.48508 * 109.47292 * 29.99749 * 17 15 13 20 20 H 1.48500 * 109.47208 * 149.99468 * 17 15 13 21 21 C 1.52994 * 117.50074 * 85.33689 * 12 11 8 22 22 C 1.53008 * 117.49871 * 153.99897 * 12 11 8 23 23 C 1.38712 * 120.04928 * 0.23641 * 6 5 4 24 24 C 1.38091 * 120.02282 * 359.48734 * 23 6 5 25 25 H 1.08996 * 109.47465 * 300.00007 * 1 2 3 26 26 H 1.09002 * 109.47134 * 60.00365 * 1 2 3 27 27 H 1.09000 * 109.46610 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00924 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.98584 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47279 * 64.33569 * 11 8 7 31 31 H 1.08996 * 109.46836 * 304.32960 * 11 8 7 32 32 H 0.96999 * 119.99918 * 355.50198 * 16 15 13 33 33 H 1.09012 * 117.49805 * 214.99579 * 21 12 11 34 34 H 1.08997 * 117.50094 * 0.02562 * 21 12 11 35 35 H 1.08996 * 117.49489 * 359.97050 * 22 12 11 36 36 H 1.08992 * 117.49801 * 144.97049 * 22 12 11 37 37 H 1.08000 * 119.99130 * 179.74585 * 23 6 5 38 38 H 1.08002 * 120.01318 * 180.26378 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1237 -0.0005 5 6 3.8480 3.4695 0.0000 6 6 2.8331 4.4150 0.0016 7 8 3.1390 5.7402 0.0027 8 16 3.2772 6.3447 -1.3874 9 8 3.9770 5.3566 -2.1312 10 8 3.8448 7.6269 -1.1570 11 6 1.5714 6.5016 -1.9843 12 6 1.5811 7.0034 -3.4296 13 6 2.2249 8.3487 -3.6463 14 1 3.2609 8.4097 -3.9451 15 6 1.4914 9.5016 -3.4628 16 7 0.2777 9.4359 -2.9605 17 14 2.2213 11.1569 -3.9280 18 1 2.9419 11.7258 -2.7609 19 1 3.1696 10.9802 -5.0571 20 1 1.1326 12.0809 -4.3360 21 6 1.7335 5.9605 -4.5386 22 6 0.3828 6.6437 -4.3104 23 6 1.5065 4.0100 0.0076 24 6 1.1947 2.6648 0.0013 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 4.3290 1.3877 -0.0005 29 1 4.8806 3.7860 0.0000 30 1 1.0307 7.2104 -1.3572 31 1 1.0804 5.5294 -1.9406 32 1 -0.1264 8.5728 -2.7799 33 1 2.2995 6.2474 -5.4250 34 1 1.8264 4.9167 -4.2386 35 1 -0.4121 6.0492 -3.8603 36 1 0.0600 7.3802 -5.0462 37 1 0.7170 4.7470 0.0130 38 1 0.1617 2.3496 0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829736727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:51 Heat of formation + Delta-G solvation = -77.548777 kcal Electronic energy + Delta-G solvation = -24073.913617 eV Core-core repulsion = 20521.528439 eV Total energy + Delta-G solvation = -3552.385178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.13930 -39.20797 -38.89979 -38.22097 -37.12497 -34.07802 -32.59068 -31.69694 -30.16158 -29.66044 -27.11196 -24.85659 -24.11465 -23.17914 -22.14538 -21.37260 -19.52720 -19.04878 -19.00252 -18.50036 -18.05479 -16.73417 -16.57517 -15.93465 -15.89114 -15.66200 -15.58357 -15.09898 -14.85793 -14.73937 -14.63278 -14.29574 -14.18677 -13.83259 -13.69187 -13.48860 -13.24221 -13.16907 -13.10680 -12.98848 -12.70119 -12.43275 -12.28884 -12.14425 -11.94928 -11.55151 -11.30850 -10.87457 -10.62903 -10.55231 -10.30407 -10.23556 -8.64658 -8.47100 -6.42659 -1.03506 -0.11171 0.05264 0.42888 1.20947 1.38824 1.51691 1.58606 1.76326 2.26908 2.52395 2.61878 2.97386 3.10597 3.15229 3.53467 3.57859 3.71176 3.78323 3.98152 4.11804 4.15711 4.28725 4.29780 4.32009 4.36055 4.50654 4.54819 4.70990 4.80519 4.88786 4.92216 4.96612 5.00861 5.04516 5.19209 5.40512 5.54255 5.98066 6.13600 6.62380 7.39985 8.77768 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.003775 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.908836 B = 7415.182718 C = 8028.747935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.110 6.110 3 C -0.077 4.077 4 C -0.087 4.087 5 C -0.088 4.088 6 C 0.027 3.973 7 O -0.675 6.675 8 S 2.607 3.393 9 O -0.975 6.975 10 O -0.968 6.968 11 C -0.580 4.580 12 C -0.015 4.015 13 C -0.607 4.607 14 H 0.041 0.959 15 C -0.001 4.001 16 N -0.916 5.916 17 Si 1.094 2.906 18 H -0.281 1.281 19 H -0.272 1.272 20 H -0.272 1.272 21 C -0.177 4.177 22 C -0.151 4.151 23 C -0.114 4.114 24 C -0.113 4.113 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.130 0.870 28 H 0.164 0.836 29 H 0.144 0.856 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.272 0.728 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.159 0.841 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 -20.838 7.435 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.134 5.866 3 C -0.190 4.190 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.017 4.017 7 O -0.634 6.634 8 S 2.707 3.293 9 O -0.974 6.974 10 O -0.966 6.966 11 C -0.710 4.710 12 C -0.017 4.017 13 C -0.644 4.644 14 H 0.059 0.941 15 C -0.204 4.204 16 N -0.551 5.551 17 Si 0.917 3.083 18 H -0.207 1.207 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.214 4.214 22 C -0.190 4.190 23 C -0.136 4.136 24 C -0.137 4.137 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.148 0.852 28 H 0.181 0.819 29 H 0.162 0.838 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.177 0.823 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.499 -20.128 7.683 21.597 hybrid contribution -0.854 0.263 -0.121 0.902 sum -2.353 -19.865 7.562 21.386 Atomic orbital electron populations 1.23932 0.91524 1.09066 1.07095 1.85636 1.09974 0.99754 1.91274 1.22209 0.96553 0.98877 1.01409 1.20918 0.95911 0.94466 0.99783 1.21436 0.99717 0.92896 0.96968 1.18558 0.95445 0.77093 1.10558 1.85824 1.89526 1.30760 1.57330 1.04979 0.78559 0.73250 0.72484 1.93504 1.71900 1.59618 1.72344 1.93523 1.76982 1.43113 1.82990 1.30185 1.22675 1.09613 1.08546 1.18588 1.02874 0.94978 0.85265 1.21625 0.98514 0.91327 1.52961 0.94084 1.26847 0.95419 1.05977 0.92180 1.70819 1.15930 1.29315 1.39017 0.83248 0.75550 0.72324 0.77211 1.20710 1.19682 1.19689 1.23122 1.00508 0.96952 1.00834 1.22767 0.91009 1.02239 1.03008 1.21582 0.94132 0.98519 0.99370 1.21394 1.00562 0.90534 1.01223 0.88200 0.88533 0.85206 0.81852 0.83821 0.85902 0.83833 0.91702 0.89757 0.87888 0.88160 0.91116 0.82317 0.81065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.15 113.37 1.04 0.02 16 2 S -0.11 -1.56 22.56 -56.49 -1.27 -2.84 16 3 C -0.08 -1.47 6.11 22.60 0.14 -1.33 16 4 C -0.09 -1.88 9.79 22.40 0.22 -1.66 16 5 C -0.09 -2.43 9.04 22.35 0.20 -2.22 16 6 C 0.03 0.85 4.79 22.50 0.11 0.96 16 7 O -0.68 -25.21 10.05 -62.66 -0.63 -25.84 16 8 S 2.61 113.90 4.84 -56.49 -0.27 113.63 16 9 O -0.98 -42.92 16.26 -118.57 -1.93 -44.84 16 10 O -0.97 -51.61 17.49 -118.57 -2.07 -53.68 16 11 C -0.58 -23.81 5.40 71.98 0.39 -23.43 16 12 C -0.02 -0.72 0.95 -52.93 -0.05 -0.77 16 13 C -0.61 -34.20 7.80 25.60 0.20 -34.00 16 14 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 15 C 0.00 -0.08 5.38 84.65 0.46 0.38 16 16 N -0.92 -52.80 13.57 21.45 0.29 -52.51 16 17 Si 1.09 51.69 29.91 68.60 2.05 53.74 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 C -0.18 -7.31 9.95 30.62 0.30 -7.00 16 22 C -0.15 -6.38 8.76 30.62 0.27 -6.11 16 23 C -0.11 -2.74 8.42 22.35 0.19 -2.56 16 24 C -0.11 -2.08 9.36 22.40 0.21 -1.87 16 25 H 0.10 0.50 7.74 -2.39 -0.02 0.48 16 26 H 0.10 0.59 7.75 -2.39 -0.02 0.57 16 27 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 30 H 0.12 5.24 7.77 -2.39 -0.02 5.22 16 31 H 0.14 4.54 6.29 -2.39 -0.02 4.52 16 32 H 0.27 15.14 6.16 -92.71 -0.57 14.57 16 33 H 0.08 3.54 8.14 -2.38 -0.02 3.52 16 34 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 35 H 0.10 3.56 8.14 -2.39 -0.02 3.55 16 36 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.16 3.24 7.43 -2.91 -0.02 3.22 16 38 H 0.17 1.89 5.87 -2.91 -0.02 1.87 16 Total: -1.00 -74.81 344.56 1.11 -73.70 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.27 Total: 18.24 kcal Atomic # 6 Polarization: -83.27 SS G_CDS: 3.67 Total: -79.60 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.29 Total: -52.51 kcal Atomic # 8 Polarization: -119.73 SS G_CDS: -4.63 Total: -124.36 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.05 Total: 53.74 kcal Atomic # 16 Polarization: 112.34 SS G_CDS: -1.55 Total: 110.79 kcal Total: -74.81 1.11 -73.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829736727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.849 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds