Wall clock time and date at job start Tue Mar 31 2020 15:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00398 * 2 1 4 4 H 1.48506 * 109.46999 * 270.00129 * 3 2 1 5 5 H 1.48500 * 109.47145 * 29.99754 * 3 2 1 6 6 H 1.48503 * 109.47424 * 150.00041 * 3 2 1 7 7 C 1.37879 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00109 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99870 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47174 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47206 * 180.02562 * 11 10 9 13 13 C 1.39018 * 120.00012 * 180.02562 * 12 11 10 14 14 C 1.39180 * 119.91595 * 5.77762 * 13 12 11 15 15 C 1.37739 * 120.06260 * 179.76299 * 14 13 12 16 16 Cl 1.73596 * 120.05697 * 180.25369 * 15 14 13 17 17 C 1.40012 * 119.88425 * 0.53322 * 15 14 13 18 18 C 1.47304 * 120.08352 * 179.74413 * 17 15 14 19 19 O 1.21535 * 119.99977 * 359.44815 * 18 17 15 20 20 O 1.34772 * 120.00173 * 179.72396 * 18 17 15 21 21 C 1.39869 * 119.83250 * 359.46523 * 17 15 14 22 22 C 1.37566 * 119.93696 * 0.25487 * 21 17 15 23 23 N 1.48015 * 119.94359 * 179.97438 * 22 21 17 24 24 O 1.21801 * 120.00197 * 353.85846 * 23 22 21 25 25 O 1.21801 * 119.99724 * 173.85078 * 23 22 21 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46968 * 60.00225 * 9 7 2 28 28 H 1.08995 * 109.47328 * 300.00168 * 9 7 2 29 29 H 1.09003 * 109.46785 * 59.99927 * 10 9 7 30 30 H 1.09004 * 109.47283 * 300.00059 * 10 9 7 31 31 H 1.08998 * 109.46985 * 60.00280 * 11 10 9 32 32 H 1.09004 * 109.46941 * 300.00118 * 11 10 9 33 33 H 0.97004 * 119.99808 * 359.97438 * 12 11 10 34 34 H 1.08000 * 119.96628 * 359.97438 * 14 13 12 35 35 H 0.96699 * 117.00030 * 179.72620 * 20 18 17 36 36 H 1.07995 * 120.03192 * 180.23198 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 7 6.0397 -4.0180 -0.0014 13 6 7.4065 -4.2720 -0.0009 14 6 8.3082 -3.2190 0.1215 15 6 9.6630 -3.4677 0.1272 16 17 10.7874 -2.1548 0.2865 17 6 10.1317 -4.7808 -0.0015 18 6 11.5797 -5.0513 -0.0016 19 8 12.3694 -4.1330 0.1001 20 8 12.0289 -6.3164 -0.1200 21 6 9.2214 -5.8356 -0.1242 22 6 7.8698 -5.5797 -0.1233 23 7 6.9064 -6.6958 -0.2537 24 8 7.3080 -7.8244 -0.4736 25 8 5.7119 -6.4855 -0.1409 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.8745 -0.6801 -0.8911 29 1 3.6577 -3.1506 -0.8908 30 1 3.6584 -3.1503 0.8893 31 1 5.9147 -2.1229 0.8890 32 1 5.9148 -2.1229 -0.8910 33 1 5.4093 -4.7552 -0.0014 34 1 7.9453 -2.2061 0.2154 35 1 12.9875 -6.4437 -0.1190 36 1 9.5793 -6.8500 -0.2199 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833062983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:05 Heat of formation + Delta-G solvation = -68.221326 kcal Electronic energy + Delta-G solvation = -24692.065521 eV Core-core repulsion = 20591.747891 eV Total energy + Delta-G solvation = -4100.317630 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.53898 -40.86544 -39.68099 -37.53013 -36.98554 -36.38973 -36.32259 -33.99666 -32.33919 -32.04451 -30.42938 -27.46617 -26.57646 -24.57529 -24.04263 -22.19235 -22.01249 -20.57568 -19.39661 -19.03341 -18.26382 -18.03028 -17.79267 -17.13280 -16.97986 -16.39128 -16.10023 -15.47475 -14.95776 -14.85551 -14.56501 -14.17235 -14.14323 -13.48243 -12.91706 -12.85344 -12.72324 -12.22434 -12.15523 -11.97525 -11.92713 -11.76051 -11.44992 -11.41469 -11.17891 -11.12090 -10.72152 -10.48072 -10.21932 -10.02867 -9.86363 -9.85812 -9.36180 -8.66015 -8.37998 -6.15437 -4.15480 -0.46200 0.09367 0.89714 1.06951 1.44779 1.98370 2.49454 2.76902 2.85263 3.21413 3.29686 3.30438 3.71645 4.11002 4.15730 4.33685 4.54547 4.76048 4.87660 4.99633 5.04954 5.14890 5.21173 5.31857 5.49935 5.58242 5.95997 6.04960 6.15267 6.17336 6.50264 6.56773 7.03396 7.11253 7.16639 7.45801 7.46968 7.63322 8.39781 8.88659 9.45347 10.97751 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.002987 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.598929 B = 9371.081459 C =11260.331014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.115 4.115 11 C 0.093 3.907 12 N -0.682 5.682 13 C 0.328 3.672 14 C -0.208 4.208 15 C 0.110 3.890 16 Cl -0.005 7.005 17 C -0.201 4.201 18 C 0.533 3.467 19 O -0.496 6.496 20 O -0.513 6.513 21 C 0.071 3.929 22 C -0.150 4.150 23 N 0.053 4.947 24 O -0.150 6.150 25 O -0.193 6.193 26 H 0.265 0.735 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.426 0.574 34 H 0.166 0.834 35 H 0.418 0.582 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.685 -10.411 0.164 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.153 4.153 11 C -0.030 4.030 12 N -0.313 5.313 13 C 0.205 3.795 14 C -0.232 4.232 15 C 0.080 3.920 16 Cl 0.025 6.975 17 C -0.207 4.207 18 C 0.377 3.623 19 O -0.384 6.384 20 O -0.326 6.326 21 C 0.051 3.949 22 C -0.241 4.241 23 N 0.564 4.436 24 O -0.369 6.369 25 O -0.391 6.391 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.277 0.723 34 H 0.184 0.816 35 H 0.277 0.723 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 24.538 -9.148 0.278 26.189 hybrid contribution 0.514 0.435 -0.033 0.674 sum 25.051 -8.713 0.244 26.525 Atomic orbital electron populations 1.69907 1.06332 1.27065 1.50474 1.25034 0.94755 0.99210 0.94404 0.86778 0.80298 0.83615 0.78550 1.20223 1.21274 1.19027 1.21056 0.89099 0.94676 1.51569 0.90845 1.19498 0.97666 0.90831 0.96644 1.21731 0.89207 1.01601 1.02729 1.22213 0.98371 0.80113 1.02281 1.46698 1.02904 1.12588 1.69062 1.17642 0.86581 0.89886 0.85436 1.20542 0.89616 0.99976 1.13085 1.20936 0.91083 0.88897 0.91093 1.98468 1.59794 1.44851 1.94353 1.18197 0.90636 0.91653 1.20176 1.20126 0.88530 0.80568 0.73071 1.91013 1.57090 1.44846 1.45494 1.84531 1.32415 1.30079 1.85564 1.20946 0.88591 1.01066 0.84249 1.20354 0.89831 0.85391 1.28544 1.43251 1.01203 1.01890 0.97252 1.94540 1.83451 1.07672 1.51190 1.94224 0.99358 1.88690 1.56874 0.92563 0.96248 0.96690 0.91486 0.91444 0.90624 0.90635 0.72292 0.81627 0.72292 0.80973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 20.58 27.47 -169.99 -4.67 15.91 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 7 C -0.53 -14.15 9.66 -34.44 -0.33 -14.49 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.18 4.04 -27.88 -0.11 -0.29 16 10 C -0.11 -1.92 5.27 -26.73 -0.14 -2.06 16 11 C 0.09 1.17 4.93 -4.04 -0.02 1.15 16 12 N -0.68 -8.19 5.59 -58.64 -0.33 -8.51 16 13 C 0.33 3.58 6.63 -83.87 -0.56 3.02 16 14 C -0.21 -2.01 9.07 -39.41 -0.36 -2.36 16 15 C 0.11 1.07 6.35 -39.10 -0.25 0.82 16 16 Cl 0.00 -0.05 26.01 -51.86 -1.35 -1.40 16 17 C -0.20 -1.87 5.88 -104.94 -0.62 -2.49 16 18 C 0.53 4.76 8.25 34.42 0.28 5.05 16 19 O -0.50 -5.54 14.74 -19.29 -0.28 -5.82 16 20 O -0.51 -3.03 12.67 -40.69 -0.52 -3.54 16 21 C 0.07 0.64 9.11 -39.22 -0.36 0.29 16 22 C -0.15 -1.64 6.85 -79.81 -0.55 -2.19 16 23 N 0.05 0.68 4.45 34.03 0.15 0.83 16 24 O -0.15 -1.94 18.45 -29.46 -0.54 -2.48 16 25 O -0.19 -2.71 15.70 -29.46 -0.46 -3.17 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 28 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 0.86 7.71 -51.93 -0.40 0.46 16 32 H 0.08 0.88 8.13 -51.93 -0.42 0.45 16 33 H 0.43 5.48 4.88 -41.32 -0.20 5.27 16 34 H 0.17 1.40 6.69 -52.49 -0.35 1.05 16 35 H 0.42 0.62 9.11 45.56 0.42 1.03 16 36 H 0.17 1.28 7.15 -52.49 -0.38 0.90 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -31.62 332.32 -7.85 -39.48 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -2.53 Total: 1.60 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -3.10 Total: -11.76 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.60 Total: -33.82 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -1.81 Total: -15.02 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.35 Total: -1.40 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.62 -7.85 -39.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833062983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.744 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds