Wall clock time and date at job start Tue Mar 31 2020 15:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00398 * 2 1 4 4 H 1.48506 * 109.46999 * 270.00129 * 3 2 1 5 5 H 1.48500 * 109.47145 * 29.99754 * 3 2 1 6 6 H 1.48503 * 109.47424 * 150.00041 * 3 2 1 7 7 C 1.37879 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00109 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99870 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47174 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47206 * 180.02562 * 11 10 9 13 13 C 1.39018 * 120.00012 * 180.02562 * 12 11 10 14 14 C 1.39180 * 119.91595 * 5.77762 * 13 12 11 15 15 C 1.37739 * 120.06260 * 179.76299 * 14 13 12 16 16 Cl 1.73596 * 120.05697 * 180.25369 * 15 14 13 17 17 C 1.40012 * 119.88425 * 0.53322 * 15 14 13 18 18 C 1.47304 * 120.08352 * 179.74413 * 17 15 14 19 19 O 1.21535 * 119.99977 * 359.44815 * 18 17 15 20 20 O 1.34772 * 120.00173 * 179.72396 * 18 17 15 21 21 C 1.39869 * 119.83250 * 359.46523 * 17 15 14 22 22 C 1.37566 * 119.93696 * 0.25487 * 21 17 15 23 23 N 1.48015 * 119.94359 * 179.97438 * 22 21 17 24 24 O 1.21801 * 120.00197 * 353.85846 * 23 22 21 25 25 O 1.21801 * 119.99724 * 173.85078 * 23 22 21 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46968 * 60.00225 * 9 7 2 28 28 H 1.08995 * 109.47328 * 300.00168 * 9 7 2 29 29 H 1.09003 * 109.46785 * 59.99927 * 10 9 7 30 30 H 1.09004 * 109.47283 * 300.00059 * 10 9 7 31 31 H 1.08998 * 109.46985 * 60.00280 * 11 10 9 32 32 H 1.09004 * 109.46941 * 300.00118 * 11 10 9 33 33 H 0.97004 * 119.99808 * 359.97438 * 12 11 10 34 34 H 1.08000 * 119.96628 * 359.97438 * 14 13 12 35 35 H 0.96699 * 117.00030 * 179.72620 * 20 18 17 36 36 H 1.07995 * 120.03192 * 180.23198 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 7 6.0397 -4.0180 -0.0014 13 6 7.4065 -4.2720 -0.0009 14 6 8.3082 -3.2190 0.1215 15 6 9.6630 -3.4677 0.1272 16 17 10.7874 -2.1548 0.2865 17 6 10.1317 -4.7808 -0.0015 18 6 11.5797 -5.0513 -0.0016 19 8 12.3694 -4.1330 0.1001 20 8 12.0289 -6.3164 -0.1200 21 6 9.2214 -5.8356 -0.1242 22 6 7.8698 -5.5797 -0.1233 23 7 6.9064 -6.6958 -0.2537 24 8 7.3080 -7.8244 -0.4736 25 8 5.7119 -6.4855 -0.1409 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.8745 -0.6801 -0.8911 29 1 3.6577 -3.1506 -0.8908 30 1 3.6584 -3.1503 0.8893 31 1 5.9147 -2.1229 0.8890 32 1 5.9148 -2.1229 -0.8910 33 1 5.4093 -4.7552 -0.0014 34 1 7.9453 -2.2061 0.2154 35 1 12.9875 -6.4437 -0.1190 36 1 9.5793 -6.8500 -0.2199 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833062983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:04 Heat of formation + Delta-G solvation = -88.295322 kcal Electronic energy + Delta-G solvation = -24692.935995 eV Core-core repulsion = 20591.747891 eV Total energy + Delta-G solvation = -4101.188104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.46581 -41.59478 -40.44453 -38.39930 -37.83985 -37.34177 -37.00162 -35.56485 -33.82656 -33.04028 -31.52100 -28.88182 -27.48545 -25.64375 -25.02569 -23.37583 -22.77764 -22.02790 -20.22427 -19.96034 -19.05872 -18.87410 -18.84065 -18.72268 -17.81933 -17.39105 -16.79035 -16.53690 -16.32334 -15.73046 -15.57045 -15.28902 -15.07575 -14.74802 -14.14138 -14.05427 -13.81152 -13.54502 -13.17219 -12.93015 -12.73710 -12.72509 -12.65642 -12.52373 -12.43221 -12.20256 -11.92718 -11.78231 -11.71967 -11.38472 -11.33672 -11.20905 -10.75782 -10.62992 -9.22638 -8.28269 -6.33731 -1.35084 -0.65428 0.01319 0.19406 0.68052 1.25261 1.39251 1.41267 1.52374 1.80027 1.97810 2.11151 2.37714 2.94236 3.07802 3.33737 3.36777 3.82334 3.90255 3.99857 4.11034 4.16957 4.30617 4.45683 4.61894 4.74771 4.77533 4.81650 4.98301 5.14363 5.41800 5.53841 5.56244 5.56978 5.67968 6.13521 6.28078 6.44841 6.75789 6.96187 7.31160 8.88716 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.002987 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.598929 B = 9371.081459 C =11260.331014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.235 1.235 7 C -0.536 4.536 8 H 0.028 0.972 9 C -0.008 4.008 10 C -0.108 4.108 11 C 0.104 3.896 12 N -0.690 5.690 13 C 0.324 3.676 14 C -0.201 4.201 15 C 0.108 3.892 16 Cl -0.006 7.006 17 C -0.199 4.199 18 C 0.539 3.461 19 O -0.520 6.520 20 O -0.504 6.504 21 C 0.083 3.917 22 C -0.155 4.155 23 N 0.054 4.946 24 O -0.147 6.147 25 O -0.229 6.229 26 H 0.265 0.735 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.422 0.578 34 H 0.182 0.818 35 H 0.438 0.562 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.145 -9.691 0.183 29.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.158 1.158 7 C -0.574 4.574 8 H 0.046 0.954 9 C -0.046 4.046 10 C -0.146 4.146 11 C -0.018 4.018 12 N -0.321 5.321 13 C 0.202 3.798 14 C -0.225 4.225 15 C 0.079 3.921 16 Cl 0.024 6.976 17 C -0.204 4.204 18 C 0.383 3.617 19 O -0.411 6.411 20 O -0.319 6.319 21 C 0.063 3.937 22 C -0.247 4.247 23 N 0.561 4.439 24 O -0.369 6.369 25 O -0.420 6.420 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.271 0.729 34 H 0.199 0.801 35 H 0.301 0.699 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 27.999 -8.456 0.302 29.250 hybrid contribution -0.484 0.053 -0.049 0.489 sum 27.516 -8.403 0.253 28.771 Atomic orbital electron populations 1.70090 1.08622 1.28201 1.52659 1.26111 0.95624 1.03896 0.94081 0.85605 0.79805 0.77670 0.79222 1.19215 1.21657 1.15750 1.21512 0.92441 0.92982 1.50505 0.95362 1.19443 0.93624 0.93897 0.97587 1.21496 0.92635 0.98640 1.01812 1.21996 0.94930 0.80815 1.04081 1.46549 1.03423 1.12053 1.70089 1.17720 0.86120 0.90208 0.85737 1.20653 0.89278 1.00247 1.12304 1.21027 0.91135 0.89086 0.90883 1.98474 1.59862 1.44940 1.94318 1.18328 0.91180 0.91532 1.19388 1.20007 0.88094 0.81066 0.72496 1.91014 1.57545 1.45796 1.46728 1.84489 1.34467 1.28191 1.84722 1.21073 0.87572 1.01871 0.83170 1.20477 0.90019 0.84762 1.29412 1.43498 1.01296 1.02253 0.96878 1.94513 1.83331 1.08355 1.50661 1.94235 1.00244 1.88886 1.58650 0.92583 0.94996 0.95253 0.92639 0.92468 0.88724 0.88937 0.72892 0.80103 0.69889 0.79246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.08 13.96 21.45 0.30 -58.78 16 2 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 3 Si 0.95 41.68 27.47 68.60 1.88 43.57 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.23 -9.01 6.54 99.48 0.65 -8.36 16 7 C -0.54 -29.49 9.66 25.60 0.25 -29.24 16 8 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.11 -3.54 5.27 30.59 0.16 -3.38 16 11 C 0.10 2.37 4.93 86.38 0.43 2.79 16 12 N -0.69 -15.58 5.59 -339.45 -1.90 -17.47 16 13 C 0.32 6.41 6.63 38.48 0.26 6.66 16 14 C -0.20 -3.30 9.07 22.38 0.20 -3.10 16 15 C 0.11 1.83 6.35 22.58 0.14 1.97 16 16 Cl -0.01 -0.11 26.01 -2.72 -0.07 -0.18 16 17 C -0.20 -3.18 5.88 -20.07 -0.12 -3.30 16 18 C 0.54 8.18 8.25 70.21 0.58 8.76 16 19 O -0.52 -10.43 14.74 19.72 0.29 -10.14 16 20 O -0.50 -4.35 12.67 -56.83 -0.72 -5.07 16 21 C 0.08 1.29 9.11 22.51 0.21 1.49 16 22 C -0.16 -3.12 6.85 36.46 0.25 -2.87 16 23 N 0.05 1.35 4.45 -46.25 -0.21 1.14 16 24 O -0.15 -3.64 18.45 18.89 0.35 -3.30 16 25 O -0.23 -6.51 15.70 18.88 0.30 -6.21 16 26 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 27 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 28 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.09 1.82 7.71 -2.39 -0.02 1.80 16 32 H 0.09 1.82 8.13 -2.38 -0.02 1.80 16 33 H 0.42 10.73 4.88 -100.74 -0.49 10.24 16 34 H 0.18 2.38 6.69 -2.91 -0.02 2.36 16 35 H 0.44 -0.11 9.11 -74.06 -0.67 -0.78 16 36 H 0.19 2.25 7.15 -2.91 -0.02 2.23 16 Total: -1.00 -70.36 332.32 3.11 -67.25 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -0.05 Total: 9.17 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 2.94 Total: -19.97 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -1.80 Total: -75.11 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: 0.22 Total: -24.72 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.57 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.07 Total: -0.18 kcal Total: -70.36 3.11 -67.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833062983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.046 kcal (2) G-P(sol) polarization free energy of solvation -70.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds