Wall clock time and date at job start Tue Mar 31 2020 14:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48502 * 109.46911 * 239.99582 * 3 2 1 5 5 H 1.48499 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47291 * 119.99278 * 3 2 1 7 7 C 1.38797 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00443 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00365 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47641 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.34568 * 119.47045 * 89.99900 * 13 12 11 15 15 C 1.38074 * 120.44672 * 180.02562 * 14 13 12 16 16 C 1.47312 * 120.26161 * 179.97438 * 15 14 13 17 17 O 1.21530 * 119.99993 * 359.97438 * 16 15 14 18 18 O 1.34768 * 120.00335 * 179.97438 * 16 15 14 19 19 C 1.41638 * 119.47298 * 359.97438 * 15 14 13 20 20 C 1.35952 * 119.00899 * 359.97438 * 19 15 14 21 21 N 1.48020 * 120.25438 * 179.97438 * 20 19 15 22 22 O 1.21800 * 119.99594 * 359.97438 * 21 20 19 23 23 O 1.21795 * 120.00017 * 180.02562 * 21 20 19 24 24 C 1.34534 * 119.47162 * 269.73029 * 13 12 11 25 25 O 1.21952 * 119.74432 * 359.97438 * 24 13 12 26 26 H 0.96999 * 119.99948 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47163 * 59.99693 * 10 9 7 28 28 H 1.09001 * 109.46663 * 299.99981 * 10 9 7 29 29 H 1.09002 * 109.47103 * 59.99643 * 11 10 9 30 30 H 1.08998 * 109.46862 * 300.00456 * 11 10 9 31 31 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 32 32 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 33 33 H 1.08001 * 119.77557 * 0.02562 * 14 13 12 34 34 H 0.96698 * 117.00454 * 179.97438 * 18 16 15 35 35 H 1.08006 * 120.50015 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9794 -5.3243 -0.0001 12 6 3.1514 -6.3077 -0.0008 13 7 2.6377 -7.6797 -0.0008 14 6 2.4050 -8.2995 -1.1723 15 6 1.9204 -9.5922 -1.1958 16 6 1.6666 -10.2666 -2.4807 17 8 1.8834 -9.6850 -3.5255 18 8 1.1940 -11.5286 -2.4976 19 6 1.6692 -10.2646 0.0252 20 6 1.9130 -9.6182 1.1961 21 7 1.6598 -10.2946 2.4881 22 8 1.2309 -11.4345 2.5050 23 8 1.8793 -9.7109 3.5344 24 6 2.4112 -8.3017 1.1705 25 8 2.6356 -7.7193 2.2182 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7314 0.8905 28 1 3.1244 -3.7314 -0.8895 29 1 1.3710 -5.4840 -0.8903 30 1 1.3705 -5.4846 0.8896 31 1 3.7602 -6.1481 0.8892 32 1 3.7599 -6.1472 -0.8908 33 1 2.5987 -7.7823 -2.1004 34 1 1.0428 -11.9293 -3.3646 35 1 1.2897 -11.2758 0.0262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833069441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:34 Heat of formation + Delta-G solvation = -98.128208 kcal Electronic energy + Delta-G solvation = -24543.851634 eV Core-core repulsion = 20444.280850 eV Total energy + Delta-G solvation = -4099.570784 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.86716 -41.74929 -40.58838 -37.93140 -36.69403 -36.51415 -36.29630 -33.30175 -32.53146 -31.58544 -27.62697 -27.23705 -25.68294 -25.33469 -23.84153 -22.47376 -21.76917 -19.90260 -19.14928 -18.43859 -18.07675 -17.78114 -17.73832 -17.59421 -17.05438 -16.60705 -16.36387 -16.00706 -15.15197 -14.89964 -14.67717 -14.34967 -13.85631 -13.63913 -13.53650 -12.89226 -12.62066 -12.42399 -12.11049 -11.98794 -11.65903 -11.60263 -11.34813 -11.25432 -11.14277 -11.14066 -11.04758 -10.89132 -10.76504 -10.69941 -9.79220 -9.17492 -9.15683 -8.49620 -6.68520 -6.33451 -4.06275 -0.73980 0.21037 0.88035 0.92529 1.70005 1.93840 2.36292 2.67330 3.11528 3.16787 3.21804 3.36667 3.47043 3.68612 3.72449 4.00487 4.10762 4.30625 4.55759 4.72264 4.79000 4.90614 4.98643 5.03246 5.11071 5.30529 5.36392 5.63454 5.84046 5.87521 5.88298 6.15840 6.19192 6.38027 7.00004 7.24228 7.49630 7.58038 8.25154 9.12841 10.74642 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.002653 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.817205 B =10550.002118 C =11821.337516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.115 4.115 12 C 0.081 3.919 13 N -0.471 5.471 14 C 0.286 3.714 15 C -0.267 4.267 16 C 0.554 3.446 17 O -0.511 6.511 18 O -0.509 6.509 19 C 0.119 3.881 20 C -0.192 4.192 21 N 0.051 4.949 22 O -0.182 6.182 23 O -0.121 6.121 24 C 0.534 3.466 25 O -0.460 6.460 26 H 0.269 0.731 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.202 0.798 34 H 0.423 0.577 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -22.762 -6.813 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.669 4.669 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.154 4.154 12 C -0.039 4.039 13 N -0.175 5.175 14 C 0.146 3.854 15 C -0.274 4.274 16 C 0.398 3.602 17 O -0.401 6.401 18 O -0.321 6.321 19 C 0.097 3.903 20 C -0.281 4.281 21 N 0.570 4.430 22 O -0.388 6.388 23 O -0.345 6.345 24 C 0.330 3.670 25 O -0.332 6.332 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.219 0.781 34 H 0.283 0.717 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.524 -21.760 -6.531 23.165 hybrid contribution 1.596 0.793 -0.373 1.821 sum 6.120 -20.966 -6.904 22.906 Atomic orbital electron populations 1.69999 1.05970 1.27689 1.46731 1.25025 0.95103 0.99195 0.94367 0.86193 0.79242 0.81032 0.78906 1.19881 1.20741 1.19828 1.22623 0.94504 0.90529 1.59224 0.90807 1.84734 1.08459 0.99419 1.96918 1.23163 1.03772 0.95844 1.03592 1.21701 0.96183 0.93283 1.04258 1.22768 0.98938 0.75205 1.06982 1.45765 1.49646 1.16479 1.05597 1.22943 0.80217 0.90716 0.91567 1.18158 1.21830 0.95787 0.91640 1.19595 0.73300 0.79676 0.87630 1.90983 1.49628 1.65852 1.33621 1.84501 1.77747 1.28559 1.41336 1.21637 0.80131 0.99988 0.88573 1.21398 1.23782 0.97049 0.85874 1.42723 0.98297 1.00309 1.01719 1.94530 1.48045 1.02487 1.93718 1.94668 1.53865 1.66695 1.19284 1.16065 0.80916 0.85955 0.84112 1.91175 1.48059 1.65440 1.28560 0.92076 0.91301 0.91492 0.90543 0.90097 0.86422 0.87138 0.78098 0.71693 0.80504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.28 13.22 55.49 0.73 -24.54 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.52 -14.25 9.50 30.94 0.29 -13.95 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.12 -3.03 21.44 -107.50 -2.30 -5.33 16 10 C -0.11 -1.98 5.67 37.15 0.21 -1.77 16 11 C -0.12 -1.50 5.54 -26.74 -0.15 -1.65 16 12 C 0.08 0.73 5.31 -4.04 -0.02 0.71 16 13 N -0.47 -4.12 2.55 -119.29 -0.30 -4.43 16 14 C 0.29 1.73 9.85 -16.41 -0.16 1.57 16 15 C -0.27 -1.70 5.87 -104.97 -0.62 -2.32 16 16 C 0.55 3.43 8.26 34.42 0.28 3.72 16 17 O -0.51 -4.45 17.10 -19.29 -0.33 -4.78 16 18 O -0.51 -1.94 12.73 -40.68 -0.52 -2.46 16 19 C 0.12 0.91 9.16 -39.11 -0.36 0.55 16 20 C -0.19 -2.18 6.87 -79.80 -0.55 -2.73 16 21 N 0.05 0.72 4.45 34.03 0.15 0.87 16 22 O -0.18 -2.46 18.46 -29.46 -0.54 -3.00 16 23 O -0.12 -2.02 17.42 -36.42 -0.63 -2.66 16 24 C 0.53 6.55 7.40 -15.41 -0.11 6.43 16 25 O -0.46 -7.42 14.73 -16.91 -0.25 -7.67 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 28 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.12 1.18 7.35 -51.93 -0.38 0.80 16 32 H 0.11 0.61 8.00 -51.93 -0.42 0.19 16 33 H 0.20 0.67 7.57 -52.49 -0.40 0.28 16 34 H 0.42 -0.17 9.11 45.56 0.42 0.25 16 35 H 0.18 1.05 7.24 -52.48 -0.38 0.67 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -36.80 339.85 -7.57 -44.37 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -2.39 Total: -3.77 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.27 Total: -7.54 kcal Atomic # 7 Polarization: -28.68 SS G_CDS: 0.58 Total: -28.10 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -2.27 Total: -20.58 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.30 Total: -5.33 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.80 -7.57 -44.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.760 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds