Wall clock time and date at job start Tue Mar 31 2020 14:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48502 * 109.46911 * 239.99582 * 3 2 1 5 5 H 1.48499 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47291 * 119.99278 * 3 2 1 7 7 C 1.38797 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00443 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00365 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47641 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.34568 * 119.47045 * 89.99900 * 13 12 11 15 15 C 1.38074 * 120.44672 * 180.02562 * 14 13 12 16 16 C 1.47312 * 120.26161 * 179.97438 * 15 14 13 17 17 O 1.21530 * 119.99993 * 359.97438 * 16 15 14 18 18 O 1.34768 * 120.00335 * 179.97438 * 16 15 14 19 19 C 1.41638 * 119.47298 * 359.97438 * 15 14 13 20 20 C 1.35952 * 119.00899 * 359.97438 * 19 15 14 21 21 N 1.48020 * 120.25438 * 179.97438 * 20 19 15 22 22 O 1.21800 * 119.99594 * 359.97438 * 21 20 19 23 23 O 1.21795 * 120.00017 * 180.02562 * 21 20 19 24 24 C 1.34534 * 119.47162 * 269.73029 * 13 12 11 25 25 O 1.21952 * 119.74432 * 359.97438 * 24 13 12 26 26 H 0.96999 * 119.99948 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47163 * 59.99693 * 10 9 7 28 28 H 1.09001 * 109.46663 * 299.99981 * 10 9 7 29 29 H 1.09002 * 109.47103 * 59.99643 * 11 10 9 30 30 H 1.08998 * 109.46862 * 300.00456 * 11 10 9 31 31 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 32 32 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 33 33 H 1.08001 * 119.77557 * 0.02562 * 14 13 12 34 34 H 0.96698 * 117.00454 * 179.97438 * 18 16 15 35 35 H 1.08006 * 120.50015 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9794 -5.3243 -0.0001 12 6 3.1514 -6.3077 -0.0008 13 7 2.6377 -7.6797 -0.0008 14 6 2.4050 -8.2995 -1.1723 15 6 1.9204 -9.5922 -1.1958 16 6 1.6666 -10.2666 -2.4807 17 8 1.8834 -9.6850 -3.5255 18 8 1.1940 -11.5286 -2.4976 19 6 1.6692 -10.2646 0.0252 20 6 1.9130 -9.6182 1.1961 21 7 1.6598 -10.2946 2.4881 22 8 1.2309 -11.4345 2.5050 23 8 1.8793 -9.7109 3.5344 24 6 2.4112 -8.3017 1.1705 25 8 2.6356 -7.7193 2.2182 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7314 0.8905 28 1 3.1244 -3.7314 -0.8895 29 1 1.3710 -5.4840 -0.8903 30 1 1.3705 -5.4846 0.8896 31 1 3.7602 -6.1481 0.8892 32 1 3.7599 -6.1472 -0.8908 33 1 2.5987 -7.7823 -2.1004 34 1 1.0428 -11.9293 -3.3646 35 1 1.2897 -11.2758 0.0262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833069441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:34 Heat of formation + Delta-G solvation = -122.798239 kcal Electronic energy + Delta-G solvation = -24544.921406 eV Core-core repulsion = 20444.280850 eV Total energy + Delta-G solvation = -4100.640557 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.72560 -42.68845 -41.10152 -38.81685 -37.54312 -37.17342 -37.08992 -34.64147 -34.31197 -32.35517 -28.64560 -28.13832 -27.68342 -26.00950 -24.81937 -23.30031 -22.67259 -20.71665 -20.05362 -19.63213 -19.00475 -18.83019 -18.73430 -18.44440 -17.75846 -17.42017 -17.16820 -16.90606 -16.58080 -16.24861 -15.95785 -15.34927 -14.99856 -14.48523 -14.19788 -14.12915 -13.68098 -13.60188 -13.31009 -12.91887 -12.84203 -12.72965 -12.66162 -12.55530 -12.52291 -12.27057 -12.13541 -12.02168 -11.88544 -11.68332 -11.47040 -11.14847 -10.36617 -9.98256 -8.69561 -8.39228 -6.15830 -1.50452 -0.42251 -0.12297 0.07549 0.91805 1.28654 1.31780 1.40337 1.47385 1.70889 1.86936 1.99870 2.26317 2.77580 2.96003 3.06094 3.12033 3.25877 3.39148 3.61422 3.80298 3.82504 4.01806 4.17811 4.26449 4.39958 4.43386 4.65032 4.71379 4.84955 5.07922 5.10718 5.23759 5.38871 5.55568 6.14675 6.16374 6.47944 6.93553 7.03752 8.69781 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.002653 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.817205 B =10550.002118 C =11821.337516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.015 3.985 3 Si 0.992 3.008 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.078 0.922 9 S -0.201 6.201 10 C -0.089 4.089 11 C -0.106 4.106 12 C 0.091 3.909 13 N -0.467 5.467 14 C 0.305 3.695 15 C -0.258 4.258 16 C 0.567 3.433 17 O -0.533 6.533 18 O -0.502 6.502 19 C 0.152 3.848 20 C -0.221 4.221 21 N 0.055 4.945 22 O -0.150 6.150 23 O -0.211 6.211 24 C 0.530 3.470 25 O -0.514 6.514 26 H 0.271 0.729 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.163 0.837 33 H 0.241 0.759 34 H 0.443 0.557 35 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 -24.013 -10.033 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.190 4.190 3 Si 0.814 3.186 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.684 4.684 8 H 0.096 0.904 9 S 0.027 5.973 10 C -0.238 4.238 11 C -0.145 4.145 12 C -0.029 4.029 13 N -0.169 5.169 14 C 0.165 3.835 15 C -0.265 4.265 16 C 0.411 3.589 17 O -0.425 6.425 18 O -0.317 6.317 19 C 0.129 3.871 20 C -0.311 4.311 21 N 0.566 4.434 22 O -0.369 6.369 23 O -0.413 6.413 24 C 0.328 3.672 25 O -0.390 6.390 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.180 0.820 33 H 0.258 0.742 34 H 0.307 0.693 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.915 -22.937 -9.679 25.589 hybrid contribution 1.119 0.902 0.371 1.484 sum 7.034 -22.036 -9.307 24.933 Atomic orbital electron populations 1.70147 1.07754 1.28616 1.48019 1.26065 0.95981 1.03189 0.93800 0.85084 0.77927 0.76128 0.79428 1.18460 1.20344 1.19179 1.23017 0.94884 0.91731 1.58790 0.90369 1.84759 1.13940 1.01454 1.97101 1.23063 1.00548 0.95828 1.04359 1.21543 0.97597 0.91806 1.03574 1.22677 0.97043 0.74153 1.09038 1.45564 1.49578 1.16295 1.05499 1.23590 0.77816 0.90599 0.91451 1.18292 1.20886 0.95865 0.91415 1.19318 0.72789 0.80122 0.86662 1.90998 1.50734 1.66580 1.34158 1.84462 1.76858 1.27253 1.43160 1.21913 0.77301 1.00480 0.87422 1.21305 1.27319 0.97374 0.85135 1.43043 0.97551 1.00224 1.02544 1.94458 1.45859 1.02553 1.94022 1.94689 1.58185 1.67492 1.20968 1.16315 0.80215 0.86234 0.84418 1.91150 1.50610 1.66634 1.30654 0.92018 0.91848 0.89187 0.88984 0.93173 0.87644 0.81960 0.74238 0.69289 0.78255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.93 13.22 21.65 0.29 -53.64 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.54 -29.56 9.50 67.95 0.65 -28.91 16 8 H 0.08 4.07 7.80 -2.91 -0.02 4.05 16 9 S -0.20 -10.06 21.44 -56.49 -1.21 -11.27 16 10 C -0.09 -2.97 5.67 71.98 0.41 -2.56 16 11 C -0.11 -2.62 5.54 30.59 0.17 -2.45 16 12 C 0.09 1.40 5.31 86.38 0.46 1.86 16 13 N -0.47 -7.06 2.55 -649.55 -1.66 -8.71 16 14 C 0.30 2.36 9.85 84.23 0.83 3.19 16 15 C -0.26 -2.23 5.87 -20.09 -0.12 -2.35 16 16 C 0.57 4.44 8.26 70.21 0.58 5.02 16 17 O -0.53 -6.91 17.10 19.74 0.34 -6.57 16 18 O -0.50 -1.53 12.73 -56.79 -0.72 -2.25 16 19 C 0.15 1.86 9.16 22.58 0.21 2.07 16 20 C -0.22 -4.90 6.87 36.47 0.25 -4.65 16 21 N 0.06 1.62 4.45 -46.24 -0.21 1.42 16 22 O -0.15 -3.99 18.46 18.89 0.35 -3.64 16 23 O -0.21 -7.73 17.42 25.54 0.45 -7.29 16 24 C 0.53 13.01 7.40 84.90 0.63 13.63 16 25 O -0.51 -17.74 14.73 15.75 0.23 -17.50 16 26 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.11 2.00 7.35 -2.39 -0.02 1.98 16 32 H 0.16 0.89 8.00 -2.39 -0.02 0.87 16 33 H 0.24 0.10 7.57 -2.91 -0.02 0.08 16 34 H 0.44 -2.34 9.11 -74.06 -0.67 -3.01 16 35 H 0.20 1.57 7.24 -2.91 -0.02 1.55 16 Total: -1.00 -86.69 339.85 4.90 -81.79 By element: Atomic # 1 Polarization: -3.61 SS G_CDS: 0.49 Total: -3.12 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 4.53 Total: -13.88 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -1.58 Total: -60.94 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: 0.64 Total: -37.26 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -10.06 SS G_CDS: -1.21 Total: -11.27 kcal Total: -86.69 4.90 -81.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.011 kcal (2) G-P(sol) polarization free energy of solvation -86.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds