Wall clock time and date at job start Tue Mar 31 2020 14:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37976 * 120.07273 * 2 1 4 4 C 1.38345 * 120.14368 * 180.25542 * 3 2 1 5 5 C 1.38379 * 120.29105 * 359.44750 * 4 3 2 6 6 N 1.48019 * 119.92631 * 180.27105 * 5 4 3 7 7 O 1.21793 * 119.99947 * 0.02562 * 6 5 4 8 8 O 1.21800 * 119.99601 * 179.97438 * 6 5 4 9 9 C 1.37939 * 120.14549 * 0.25545 * 5 4 3 10 10 C 1.39558 * 120.07633 * 179.68347 * 2 1 3 11 11 C 1.47849 * 120.14032 * 359.97438 * 10 2 1 12 12 O 1.21551 * 120.00487 * 353.76985 * 11 10 2 13 13 N 1.34781 * 119.99873 * 173.76483 * 11 10 2 14 14 S 1.65593 * 120.00017 * 179.97438 * 13 11 10 15 15 O 1.42097 * 104.27880 * 181.07521 * 14 13 11 16 16 O 1.42100 * 104.28091 * 308.93103 * 14 13 11 17 17 C 1.81400 * 104.44930 * 65.00560 * 14 13 11 18 18 C 1.50697 * 109.47205 * 179.97438 * 17 14 13 19 19 H 1.07999 * 120.00318 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99905 * 179.97438 * 18 17 14 21 21 N 1.31513 * 120.00051 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46998 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47036 * 120.00316 * 22 20 18 25 25 H 1.48498 * 109.46867 * 239.99944 * 22 20 18 26 26 H 1.09004 * 109.46961 * 263.72177 * 1 2 3 27 27 H 1.08992 * 109.47131 * 23.72489 * 1 2 3 28 28 H 1.08998 * 109.47051 * 143.72352 * 1 2 3 29 29 H 1.07997 * 119.93245 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.85080 * 179.72514 * 4 3 2 31 31 H 1.08006 * 120.07212 * 179.97438 * 9 5 4 32 32 H 0.97002 * 119.99929 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.47057 * 299.99667 * 17 14 13 34 34 H 1.08991 * 109.47356 * 59.99742 * 17 14 13 35 35 H 0.97004 * 119.99841 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2813 0.0018 0.0008 6 7 5.7615 0.0131 0.0011 7 8 6.3624 1.0725 -0.0036 8 8 6.3784 -1.0371 0.0070 9 6 3.6023 -1.1989 0.0070 10 6 2.2064 -1.2077 0.0067 11 6 1.4720 -2.4908 0.0143 12 8 0.2619 -2.4980 0.1291 13 7 2.1443 -3.6528 -0.1060 14 16 1.3219 -5.0900 -0.0968 15 8 2.3381 -6.0761 -0.2156 16 8 0.5030 -5.0179 1.0623 17 6 0.3054 -5.0395 -1.5984 18 6 -0.4992 -6.3094 -1.7034 19 1 -0.4085 -7.0706 -0.9426 20 6 -1.3519 -6.4990 -2.7702 21 7 -1.4627 -5.5719 -3.6963 22 14 -2.3487 -8.0735 -2.9006 23 1 -2.0448 -8.9493 -1.7405 24 1 -3.7967 -7.7437 -2.9054 25 1 -1.9975 -8.7788 -4.1594 26 1 -0.3633 -0.1124 1.0215 27 1 -0.3633 0.9407 -0.4134 28 1 -0.3633 -0.8285 -0.6080 29 1 1.6585 2.1294 -0.0004 30 1 4.1182 2.1331 -0.0098 31 1 4.1494 -2.1301 0.0114 32 1 3.1100 -3.6472 -0.1973 33 1 -0.3690 -4.1845 -1.5520 34 1 0.9513 -4.9458 -2.4714 35 1 -2.0629 -5.7052 -4.4466 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835411353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:39 Heat of formation + Delta-G solvation = -110.721667 kcal Electronic energy + Delta-G solvation = -25474.917836 eV Core-core repulsion = 21374.800958 eV Total energy + Delta-G solvation = -4100.116877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.34526 -41.99583 -39.92400 -38.17868 -37.73547 -37.14229 -36.10223 -35.46450 -34.37077 -32.72934 -31.14506 -29.72298 -26.59637 -25.77538 -25.51050 -23.54414 -22.57545 -21.12258 -20.53656 -19.82079 -19.27925 -18.66991 -18.60491 -18.40626 -17.62907 -17.03897 -16.77603 -16.71356 -16.42658 -16.12663 -15.96507 -15.21435 -14.74134 -14.53821 -14.18909 -13.89221 -13.51053 -13.48352 -13.38413 -13.28107 -13.24177 -13.18912 -13.12296 -12.77490 -12.73671 -12.58680 -12.34857 -12.33092 -12.17241 -11.83107 -11.34845 -11.12050 -10.81822 -10.67603 -10.48523 -8.45637 -6.64663 -1.35068 -0.86866 -0.75220 0.14108 0.23719 1.09871 1.36792 1.37412 1.45155 1.52225 2.13060 2.27952 2.62070 2.76227 2.88741 3.15972 3.27678 3.36802 3.44109 3.61193 3.77086 3.85078 4.25074 4.37013 4.55951 4.60165 4.61289 4.69619 4.74527 4.98559 5.04957 5.23833 5.26588 5.39362 5.49679 5.65380 6.20590 6.41475 6.44622 7.07531 8.67267 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.003388 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.454220 B = 8261.302015 C = 8898.820453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.036 3.964 3 C -0.106 4.106 4 C -0.008 4.008 5 C -0.073 4.073 6 N 0.032 4.968 7 O -0.150 6.150 8 O -0.196 6.196 9 C -0.014 4.014 10 C -0.155 4.155 11 C 0.579 3.421 12 O -0.499 6.499 13 N -1.045 6.045 14 S 2.595 3.405 15 O -0.976 6.976 16 O -0.977 6.977 17 C -0.417 4.417 18 C -0.569 4.569 19 H 0.068 0.932 20 C 0.028 3.972 21 N -0.906 5.906 22 Si 0.967 3.033 23 H -0.262 1.262 24 H -0.267 1.267 25 H -0.265 1.265 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.202 0.798 30 H 0.189 0.811 31 H 0.164 0.836 32 H 0.441 0.559 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.656 18.164 4.996 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.035 3.965 3 C -0.124 4.124 4 C -0.027 4.027 5 C -0.157 4.157 6 N 0.548 4.452 7 O -0.370 6.370 8 O -0.404 6.404 9 C -0.033 4.033 10 C -0.161 4.161 11 C 0.368 3.632 12 O -0.373 6.373 13 N -0.810 5.810 14 S 2.696 3.304 15 O -0.967 6.967 16 O -0.968 6.968 17 C -0.552 4.552 18 C -0.608 4.608 19 H 0.086 0.914 20 C -0.176 4.176 21 N -0.542 5.542 22 Si 0.789 3.211 23 H -0.186 1.186 24 H -0.192 1.192 25 H -0.189 1.189 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.095 0.905 29 H 0.219 0.781 30 H 0.206 0.794 31 H 0.181 0.819 32 H 0.281 0.719 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.129 17.491 5.632 19.371 hybrid contribution 0.460 -0.839 -0.779 1.234 sum 6.589 16.652 4.853 18.554 Atomic orbital electron populations 1.21363 0.88137 1.05367 1.04677 1.20841 0.98563 0.91266 0.85880 1.21576 0.91852 0.99208 0.99715 1.21714 0.95045 0.97299 0.88670 1.21032 0.78514 0.97553 1.18559 1.43767 1.04108 1.00258 0.97024 1.94508 1.70149 1.19884 1.52506 1.94590 1.68996 1.21459 1.55312 1.21182 0.93090 0.98701 0.90348 1.19446 0.92183 0.93084 1.11378 1.18349 0.86877 0.84256 0.73754 1.90975 1.13808 1.86790 1.45747 1.55044 1.22779 1.23380 1.79773 1.05676 0.74573 0.72031 0.78170 1.93513 1.57868 1.56808 1.88505 1.93496 1.70137 1.84998 1.48137 1.27644 1.09147 1.05745 1.12703 1.20740 1.27306 1.01636 1.11103 0.91407 1.25829 0.96824 1.00716 0.94199 1.70027 1.37195 1.35225 1.11734 0.85372 0.78402 0.78219 0.79147 1.18618 1.19227 1.18930 0.88898 0.87340 0.90527 0.78086 0.79415 0.81853 0.71897 0.89565 0.89503 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.73 71.24 0.62 -1.75 16 2 C 0.04 0.58 5.91 -19.61 -0.12 0.46 16 3 C -0.11 -0.89 9.66 22.23 0.21 -0.67 16 4 C -0.01 -0.09 9.55 22.33 0.21 0.12 16 5 C -0.07 -1.28 6.85 36.34 0.25 -1.03 16 6 N 0.03 0.71 4.45 -46.55 -0.21 0.50 16 7 O -0.15 -3.28 18.44 18.90 0.35 -2.93 16 8 O -0.20 -5.02 18.44 18.89 0.35 -4.67 16 9 C -0.01 -0.26 9.03 22.53 0.20 -0.05 16 10 C -0.16 -3.33 5.87 -20.09 -0.12 -3.44 16 11 C 0.58 17.44 7.44 86.79 0.65 18.08 16 12 O -0.50 -18.29 11.45 12.50 0.14 -18.15 16 13 N -1.05 -31.94 5.55 -175.60 -0.98 -32.91 16 14 S 2.59 109.39 5.03 -56.49 -0.28 109.11 16 15 O -0.98 -43.51 18.08 -127.65 -2.31 -45.82 16 16 O -0.98 -47.08 17.04 -120.72 -2.06 -49.14 16 17 C -0.42 -20.44 5.64 71.24 0.40 -20.04 16 18 C -0.57 -31.60 9.13 25.60 0.23 -31.36 16 19 H 0.07 3.70 7.71 -2.91 -0.02 3.68 16 20 C 0.03 1.54 5.46 84.66 0.46 2.00 16 21 N -0.91 -50.80 13.29 21.45 0.28 -50.52 16 22 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.11 1.03 8.04 -2.39 -0.02 1.01 16 28 H 0.08 1.89 5.86 -2.39 -0.01 1.88 16 29 H 0.20 0.00 8.06 -2.91 -0.02 -0.03 16 30 H 0.19 0.95 7.60 -2.91 -0.02 0.93 16 31 H 0.16 2.78 6.00 -2.91 -0.02 2.76 16 32 H 0.44 9.89 6.86 -96.75 -0.66 9.23 16 33 H 0.09 4.39 7.19 -2.39 -0.02 4.37 16 34 H 0.09 4.14 8.14 -2.39 -0.02 4.12 16 35 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -77.06 327.81 0.84 -76.22 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.51 Total: 11.80 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 3.01 Total: -37.69 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -0.90 Total: -82.93 kcal Atomic # 8 Polarization: -117.18 SS G_CDS: -3.52 Total: -120.70 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 109.39 SS G_CDS: -0.28 Total: 109.11 kcal Total: -77.06 0.84 -76.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.506 kcal (2) G-P(sol) polarization free energy of solvation -77.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds