Wall clock time and date at job start Tue Mar 31 2020 15:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99766 * 2 1 4 4 H 1.48506 * 109.47081 * 269.99543 * 3 2 1 5 5 H 1.48499 * 109.47472 * 29.99678 * 3 2 1 6 6 H 1.48503 * 109.47231 * 150.00059 * 3 2 1 7 7 C 1.38798 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99677 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00276 * 0.02562 * 7 2 1 10 10 C 1.80989 * 100.00254 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47631 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99483 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00558 * 179.97438 * 11 10 9 14 14 C 1.45193 * 117.00008 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.22755 * 30.54108 * 14 13 11 16 16 C 1.52732 * 109.25819 * 150.00446 * 14 13 11 17 17 C 1.53326 * 108.37698 * 171.44795 * 16 14 13 18 18 C 1.52720 * 108.39064 * 290.13373 * 17 16 14 19 19 C 1.50630 * 110.60892 * 51.05055 * 18 17 16 20 20 C 1.39147 * 117.73673 * 162.32598 * 19 18 17 21 21 F 1.35104 * 119.73617 * 359.73703 * 20 19 18 22 22 C 1.38116 * 120.53333 * 179.74589 * 20 19 18 23 23 C 1.38453 * 119.71784 * 359.97405 * 22 20 19 24 24 F 1.35092 * 120.12760 * 180.15091 * 23 22 20 25 25 C 1.38163 * 119.74035 * 0.12826 * 23 22 20 26 26 C 1.37647 * 122.56396 * 342.27780 * 19 18 17 27 27 H 0.97000 * 119.99863 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47273 * 60.00018 * 10 9 7 29 29 H 1.09000 * 109.47261 * 300.00203 * 10 9 7 30 30 H 1.08999 * 109.68271 * 51.72215 * 16 14 13 31 31 H 1.09001 * 109.67847 * 291.16652 * 16 14 13 32 32 H 1.09000 * 109.67861 * 49.85769 * 17 16 14 33 33 H 1.09004 * 109.67747 * 170.40964 * 17 16 14 34 34 H 1.09004 * 109.25138 * 171.34782 * 18 17 16 35 35 H 1.09000 * 109.25113 * 290.75922 * 18 17 16 36 36 H 1.07995 * 120.14144 * 179.97438 * 22 20 19 37 37 H 1.08001 * 119.71011 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6528 0.6999 6 1 3.5479 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7957 -5.5016 0.0011 13 8 2.8408 -6.3389 0.0008 14 6 2.2612 -7.6701 0.0008 15 1 1.3050 -7.6453 -0.5218 16 6 3.2048 -8.6304 -0.7204 17 6 2.6836 -10.0589 -0.5239 18 6 2.8852 -10.4483 0.9391 19 6 2.3181 -9.3926 1.8517 20 6 2.0760 -9.7437 3.1762 21 9 2.3461 -10.9988 3.5969 22 6 1.5616 -8.8194 4.0643 23 6 1.2852 -7.5332 3.6330 24 9 0.7847 -6.6217 4.4954 25 6 1.5236 -7.1854 2.3173 26 6 2.0384 -8.1149 1.4228 27 1 -0.4850 0.8401 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7312 -0.8894 30 1 4.2072 -8.5443 -0.3011 31 1 3.2292 -8.3916 -1.7837 32 1 1.6230 -10.1001 -0.7719 33 1 3.2382 -10.7435 -1.1657 34 1 2.3833 -11.3967 1.1310 35 1 3.9511 -10.5601 1.1376 36 1 1.3757 -9.0989 5.0908 37 1 1.3083 -6.1818 1.9815 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835507177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:38 Heat of formation + Delta-G solvation = -161.403751 kcal Electronic energy + Delta-G solvation = -25137.920625 eV Core-core repulsion = 21028.058836 eV Total energy + Delta-G solvation = -4109.861789 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.28033 -49.05106 -41.01465 -39.31243 -36.68257 -35.62787 -32.51367 -31.97862 -30.62470 -29.82728 -28.55798 -25.59591 -24.23769 -23.47438 -22.61254 -21.05529 -20.14201 -18.25883 -18.03147 -17.60537 -17.27938 -16.50833 -16.29320 -16.01658 -15.87418 -15.48559 -15.43471 -14.87075 -14.78688 -14.48362 -14.22843 -14.06990 -13.66923 -13.21884 -13.07731 -12.85091 -12.66924 -12.53206 -12.37575 -12.17832 -11.50120 -11.42705 -11.26500 -11.13356 -11.10913 -11.09145 -10.83003 -10.51683 -10.11272 -9.93187 -9.15174 -9.14222 -8.78054 -8.41143 -6.64486 -6.30210 -4.03461 0.66124 0.72138 2.47338 2.49134 3.06544 3.18940 3.22936 3.27153 3.45319 3.58526 4.02881 4.10498 4.11829 4.23363 4.49998 4.56961 4.64539 4.72916 4.83695 4.96874 5.05914 5.10088 5.12909 5.33949 5.37049 5.41250 5.50969 5.56505 5.62063 5.68785 5.71632 5.78646 5.86840 5.90987 6.01502 6.06233 6.51969 6.54371 7.52700 8.00173 8.27421 9.15469 10.77244 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.003055 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.815936 B = 9162.397725 C =10153.990802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.076 0.924 9 S -0.056 6.056 10 C -0.131 4.131 11 C 0.476 3.524 12 O -0.482 6.482 13 O -0.347 6.347 14 C 0.130 3.870 15 H 0.105 0.895 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.080 4.080 19 C -0.109 4.109 20 C 0.122 3.878 21 F -0.130 7.130 22 C -0.187 4.187 23 C 0.131 3.869 24 F -0.125 7.125 25 C -0.148 4.148 26 C -0.042 4.042 27 H 0.270 0.730 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.150 0.850 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 -21.915 2.266 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.685 4.685 8 H 0.095 0.905 9 S 0.170 5.830 10 C -0.279 4.279 11 C 0.318 3.682 12 O -0.368 6.368 13 O -0.265 6.265 14 C 0.074 3.926 15 H 0.123 0.877 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.117 4.117 19 C -0.110 4.110 20 C 0.102 3.898 21 F -0.109 7.109 22 C -0.206 4.206 23 C 0.112 3.888 24 F -0.104 7.104 25 C -0.167 4.167 26 C -0.042 4.042 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.167 0.833 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.324 -22.111 2.325 22.861 hybrid contribution 1.632 1.303 0.486 2.144 sum 6.956 -20.808 2.810 22.119 Atomic orbital electron populations 1.70007 1.05987 1.27693 1.46482 1.25002 0.95065 0.99122 0.94270 0.86121 0.79434 0.81261 0.78437 1.20169 1.20689 1.19557 1.22834 0.95029 0.91107 1.59546 0.90549 1.85419 1.04056 0.96592 1.96902 1.23348 1.07232 0.90674 1.06660 1.23466 0.85428 0.87395 0.71953 1.90691 1.16746 1.85382 1.43979 1.86690 1.40869 1.14501 1.84468 1.21409 0.99390 0.80169 0.91603 0.87699 1.21649 0.99527 0.92982 1.01126 1.21538 1.02462 0.95624 0.95660 1.20447 1.01547 0.96211 0.93516 1.19560 1.02868 0.95510 0.93078 1.17153 1.00650 0.79851 0.92116 1.91505 1.91509 1.37488 1.90381 1.20982 1.05432 0.92495 1.01706 1.17114 0.97687 0.86394 0.87629 1.91570 1.84517 1.65448 1.68824 1.21547 1.00775 1.02464 0.91908 1.19476 0.96970 0.92021 0.95773 0.92029 0.87812 0.87690 0.89861 0.89764 0.90862 0.89862 0.89927 0.89705 0.83252 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.49 13.22 55.49 0.73 -24.76 16 2 C 0.08 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 20.97 29.55 -169.99 -5.02 15.94 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 7 C -0.54 -14.85 9.50 30.94 0.29 -14.55 16 8 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 10 C -0.13 -2.58 6.27 36.01 0.23 -2.35 16 11 C 0.48 8.59 6.33 36.01 0.23 8.82 16 12 O -0.48 -9.84 13.66 -18.75 -0.26 -10.09 16 13 O -0.35 -5.18 9.63 -39.25 -0.38 -5.56 16 14 C 0.13 1.60 2.58 -28.05 -0.07 1.52 16 15 H 0.11 1.36 7.16 -51.93 -0.37 0.99 16 16 C -0.12 -1.00 5.63 -26.70 -0.15 -1.15 16 17 C -0.12 -0.78 5.98 -26.71 -0.16 -0.94 16 18 C -0.08 -0.62 5.34 -28.06 -0.15 -0.77 16 19 C -0.11 -1.17 5.74 -104.53 -0.60 -1.77 16 20 C 0.12 1.33 7.21 -39.29 -0.28 1.04 16 21 F -0.13 -1.34 16.46 2.25 0.04 -1.31 16 22 C -0.19 -2.12 10.00 -39.55 -0.40 -2.51 16 23 C 0.13 1.80 7.30 -39.53 -0.29 1.51 16 24 F -0.13 -1.87 17.27 2.25 0.04 -1.83 16 25 C -0.15 -2.18 9.02 -39.37 -0.36 -2.54 16 26 C -0.04 -0.53 5.57 -104.62 -0.58 -1.11 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.10 1.91 8.14 -51.91 -0.42 1.49 16 29 H 0.10 1.90 8.14 -51.92 -0.42 1.47 16 30 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.15 2.53 4.84 -52.49 -0.25 2.27 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -31.25 334.59 -8.36 -39.61 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -3.95 Total: -0.58 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.39 Total: -12.80 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.73 Total: -24.76 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.63 Total: -15.65 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.14 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.25 -8.36 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835507177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.797 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds