Wall clock time and date at job start Tue Mar 31 2020 15:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99766 * 2 1 4 4 H 1.48506 * 109.47081 * 269.99543 * 3 2 1 5 5 H 1.48499 * 109.47472 * 29.99678 * 3 2 1 6 6 H 1.48503 * 109.47231 * 150.00059 * 3 2 1 7 7 C 1.38798 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99677 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00276 * 0.02562 * 7 2 1 10 10 C 1.80989 * 100.00254 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47631 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99483 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00558 * 179.97438 * 11 10 9 14 14 C 1.45193 * 117.00008 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.22755 * 30.54108 * 14 13 11 16 16 C 1.52732 * 109.25819 * 150.00446 * 14 13 11 17 17 C 1.53326 * 108.37698 * 171.44795 * 16 14 13 18 18 C 1.52720 * 108.39064 * 290.13373 * 17 16 14 19 19 C 1.50630 * 110.60892 * 51.05055 * 18 17 16 20 20 C 1.39147 * 117.73673 * 162.32598 * 19 18 17 21 21 F 1.35104 * 119.73617 * 359.73703 * 20 19 18 22 22 C 1.38116 * 120.53333 * 179.74589 * 20 19 18 23 23 C 1.38453 * 119.71784 * 359.97405 * 22 20 19 24 24 F 1.35092 * 120.12760 * 180.15091 * 23 22 20 25 25 C 1.38163 * 119.74035 * 0.12826 * 23 22 20 26 26 C 1.37647 * 122.56396 * 342.27780 * 19 18 17 27 27 H 0.97000 * 119.99863 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47273 * 60.00018 * 10 9 7 29 29 H 1.09000 * 109.47261 * 300.00203 * 10 9 7 30 30 H 1.08999 * 109.68271 * 51.72215 * 16 14 13 31 31 H 1.09001 * 109.67847 * 291.16652 * 16 14 13 32 32 H 1.09000 * 109.67861 * 49.85769 * 17 16 14 33 33 H 1.09004 * 109.67747 * 170.40964 * 17 16 14 34 34 H 1.09004 * 109.25138 * 171.34782 * 18 17 16 35 35 H 1.09000 * 109.25113 * 290.75922 * 18 17 16 36 36 H 1.07995 * 120.14144 * 179.97438 * 22 20 19 37 37 H 1.08001 * 119.71011 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6528 0.6999 6 1 3.5479 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7957 -5.5016 0.0011 13 8 2.8408 -6.3389 0.0008 14 6 2.2612 -7.6701 0.0008 15 1 1.3050 -7.6453 -0.5218 16 6 3.2048 -8.6304 -0.7204 17 6 2.6836 -10.0589 -0.5239 18 6 2.8852 -10.4483 0.9391 19 6 2.3181 -9.3926 1.8517 20 6 2.0760 -9.7437 3.1762 21 9 2.3461 -10.9988 3.5969 22 6 1.5616 -8.8194 4.0643 23 6 1.2852 -7.5332 3.6330 24 9 0.7847 -6.6217 4.4954 25 6 1.5236 -7.1854 2.3173 26 6 2.0384 -8.1149 1.4228 27 1 -0.4850 0.8401 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7312 -0.8894 30 1 4.2072 -8.5443 -0.3011 31 1 3.2292 -8.3916 -1.7837 32 1 1.6230 -10.1001 -0.7719 33 1 3.2382 -10.7435 -1.1657 34 1 2.3833 -11.3967 1.1310 35 1 3.9511 -10.5601 1.1376 36 1 1.3757 -9.0989 5.0908 37 1 1.3083 -6.1818 1.9815 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835507177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:37 Heat of formation + Delta-G solvation = -177.250770 kcal Electronic energy + Delta-G solvation = -25138.607803 eV Core-core repulsion = 21028.058836 eV Total energy + Delta-G solvation = -4110.548968 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.16803 -50.13421 -42.18895 -40.43348 -37.85708 -36.57827 -34.62396 -32.97343 -31.51222 -31.25346 -29.52398 -27.72083 -25.11721 -24.35289 -23.61507 -22.35706 -20.93342 -19.93084 -19.30189 -18.78542 -18.51983 -17.67784 -17.31548 -17.16251 -16.90618 -16.83337 -16.60982 -16.47615 -16.03931 -15.77729 -15.44254 -14.95910 -14.68345 -14.57770 -14.20197 -14.03558 -13.78263 -13.68614 -13.45276 -13.22494 -13.19029 -12.90920 -12.68438 -12.40538 -12.35996 -12.10932 -11.83614 -11.73551 -11.62750 -11.37165 -11.17021 -10.40265 -10.11674 -9.72074 -8.75101 -8.38838 -6.18597 -0.30080 -0.25876 0.98127 1.03015 1.39728 1.42344 1.54035 1.78609 2.15106 2.22555 2.62343 2.96442 3.09655 3.17769 3.24507 3.43234 3.57847 3.71893 3.76710 3.85838 3.96490 4.12954 4.16885 4.21743 4.36186 4.40572 4.49224 4.61111 4.71144 4.78203 4.81676 4.89721 5.07845 5.12209 5.15999 5.23063 5.38964 5.39893 5.57857 6.16686 6.59886 7.03087 8.70323 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.003055 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.815936 B = 9162.397725 C =10153.990802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.086 0.914 9 S -0.134 6.134 10 C -0.112 4.112 11 C 0.486 3.514 12 O -0.511 6.511 13 O -0.339 6.339 14 C 0.123 3.877 15 H 0.094 0.906 16 C -0.111 4.111 17 C -0.109 4.109 18 C -0.082 4.082 19 C -0.096 4.096 20 C 0.125 3.875 21 F -0.121 7.121 22 C -0.176 4.176 23 C 0.110 3.890 24 F -0.140 7.140 25 C -0.171 4.171 26 C -0.052 4.052 27 H 0.273 0.727 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.172 0.828 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.443 -23.947 1.879 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.697 4.697 8 H 0.104 0.896 9 S 0.093 5.907 10 C -0.260 4.260 11 C 0.329 3.671 12 O -0.399 6.399 13 O -0.256 6.256 14 C 0.069 3.931 15 H 0.112 0.888 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.119 4.119 19 C -0.097 4.097 20 C 0.106 3.894 21 F -0.099 7.099 22 C -0.196 4.196 23 C 0.091 3.909 24 F -0.118 7.118 25 C -0.190 4.190 26 C -0.053 4.053 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.143 0.857 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.189 0.811 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.799 -24.172 1.934 25.473 hybrid contribution 0.899 1.734 0.632 2.053 sum 8.699 -22.438 2.566 24.201 Atomic orbital electron populations 1.70162 1.07925 1.28800 1.47687 1.26109 0.95969 1.03259 0.93510 0.84944 0.78188 0.75914 0.78904 1.19116 1.20321 1.18248 1.23195 0.95520 0.91608 1.59368 0.89610 1.85518 1.08972 0.99004 1.97164 1.23128 1.04458 0.90177 1.08267 1.23033 0.85062 0.87631 0.71414 1.90683 1.18025 1.85818 1.45422 1.86648 1.39985 1.15189 1.83755 1.21824 1.00180 0.79137 0.91989 0.88847 1.21755 0.98798 0.92989 1.01250 1.21577 1.02849 0.94606 0.95621 1.20631 1.02512 0.95475 0.93253 1.19890 1.00989 0.95223 0.93596 1.17156 1.00152 0.80001 0.92122 1.91535 1.91329 1.36776 1.90296 1.21153 1.04192 0.91305 1.02919 1.17266 0.99090 0.87272 0.87289 1.91525 1.84973 1.66185 1.69157 1.21457 1.02675 1.01818 0.93094 1.19522 0.97563 0.92651 0.95514 0.91843 0.86451 0.85656 0.89130 0.88581 0.91049 0.86707 0.88352 0.87875 0.81055 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.89 13.22 21.65 0.29 -54.61 16 2 C 0.02 0.94 5.49 84.86 0.47 1.40 16 3 Si 1.00 42.99 29.55 68.60 2.03 45.01 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.55 -30.78 9.50 67.95 0.65 -30.13 16 8 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 9 S -0.13 -7.20 20.57 -56.49 -1.16 -8.37 16 10 C -0.11 -4.45 6.27 71.24 0.45 -4.00 16 11 C 0.49 17.99 6.33 71.24 0.45 18.44 16 12 O -0.51 -21.91 13.66 21.96 0.30 -21.61 16 13 O -0.34 -10.01 9.63 -51.39 -0.50 -10.51 16 14 C 0.12 2.96 2.58 29.74 0.08 3.03 16 15 H 0.09 2.46 7.16 -2.39 -0.02 2.45 16 16 C -0.11 -1.61 5.63 30.61 0.17 -1.43 16 17 C -0.11 -1.07 5.98 30.61 0.18 -0.88 16 18 C -0.08 -0.94 5.34 29.73 0.16 -0.78 16 19 C -0.10 -1.84 5.74 -19.81 -0.11 -1.95 16 20 C 0.13 2.45 7.21 22.46 0.16 2.62 16 21 F -0.12 -2.11 16.46 44.97 0.74 -1.37 16 22 C -0.18 -3.81 10.00 22.29 0.22 -3.59 16 23 C 0.11 3.11 7.30 22.30 0.16 3.27 16 24 F -0.14 -4.41 17.27 44.97 0.78 -3.63 16 25 C -0.17 -5.26 9.02 22.41 0.20 -5.06 16 26 C -0.05 -1.29 5.57 -19.86 -0.11 -1.40 16 27 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 29 H 0.13 4.46 8.14 -2.40 -0.02 4.44 16 30 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.10 0.91 7.85 -2.38 -0.02 0.89 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.12 4.29 4.84 -2.91 -0.01 4.28 16 Total: -1.00 -70.67 334.59 6.72 -63.95 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 1.12 Total: 11.61 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 3.13 Total: -20.48 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.29 Total: -54.61 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.20 Total: -32.12 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 1.52 Total: -5.00 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.20 SS G_CDS: -1.16 Total: -8.37 kcal Total: -70.67 6.72 -63.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835507177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.298 kcal (2) G-P(sol) polarization free energy of solvation -70.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds